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Fusion gene ID: 39237 |
FusionGeneSummary for TPM3_SEC24D |
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Fusion gene information | Fusion gene name: TPM3_SEC24D | Fusion gene ID: 39237 | Hgene | Tgene | Gene symbol | TPM3 | SEC24D | Gene ID | 7170 | 9871 |
Gene name | tropomyosin 3 | SEC24 homolog D, COPII coat complex component | |
Synonyms | CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30 | CLCRP2 | |
Cytomap | 1q21.3 | 4q26 | |
Type of gene | protein-coding | protein-coding | |
Description | tropomyosin alpha-3 chainalpha-tropomyosin, slow skeletalcytoskeletal tropomyosin TM30epididymis luminal protein 189epididymis secretory sperm binding protein Li 82pheat-stable cytoskeletal protein 30 kDatropomyosin 3 nutropomyosin gammatropomyosi | protein transport protein Sec24DSEC24 related gene family, member DSEC24-related protein D | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | P06753 | O94855 | |
Ensembl transtripts involved in fusion gene | ENST00000368533, ENST00000469717, ENST00000330188, ENST00000341485, ENST00000341372, ENST00000328159, ENST00000271850, ENST00000302206, ENST00000368531, ENST00000323144, ENST00000368530, | ENST00000280551, ENST00000379735, ENST00000429811, ENST00000505134, ENST00000511481, ENST00000419654, | |
Fusion gene scores | * DoF score | 7 X 6 X 6=252 | 2 X 2 X 2=8 |
# samples | 14 | 3 | |
** MAII score | log2(14/252*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/8*10)=1.90689059560852 | |
Context | PubMed: TPM3 [Title/Abstract] AND SEC24D [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | SEC24D | GO:0090110 | cargo loading into COPII-coated vesicle | 17499046|18843296 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BE695881 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - | ||
ChiTaRS3.1 | AW853022 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000368533 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368533 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368533 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000368533 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368533 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000368533 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000469717 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000469717 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000469717 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000469717 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000469717 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000469717 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000330188 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000330188 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000330188 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000330188 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000330188 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000330188 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000341485 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000341485 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000341485 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000341485 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000341485 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000341485 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000341372 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000341372 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000341372 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000341372 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000341372 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000341372 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000328159 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000328159 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000328159 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000328159 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000328159 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000328159 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000271850 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000271850 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000271850 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000271850 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000271850 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000271850 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000302206 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000302206 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000302206 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000302206 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000302206 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000302206 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368531 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368531 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368531 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000368531 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368531 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000368531 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000323144 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000323144 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000323144 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000323144 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000323144 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000323144 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368530 | ENST00000280551 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368530 | ENST00000379735 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368530 | ENST00000429811 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-5UTR | ENST00000368530 | ENST00000505134 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-3UTR | ENST00000368530 | ENST00000511481 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
intron-intron | ENST00000368530 | ENST00000419654 | TPM3 | chr1 | 154158571 | - | SEC24D | chr4 | 119644235 | - |
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FusionProtFeatures for TPM3_SEC24D |
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Hgene | Tgene |
TPM3 | SEC24D |
Component of the coat protein complex II (COPII) whichpromotes the formation of transport vesicles from the endoplasmicreticulum (ER). The coat has two main functions, the physicaldeformation of the endoplasmic reticulum membrane into vesiclesand the selection of cargo molecules for their transport to theGolgi complex (PubMed:17499046, PubMed:20427317, PubMed:18843296).Plays a central role in cargo selection within the COPII complexand together with SEC24C may have a different specificity comparedto SEC24A and SEC24B (PubMed:17499046, PubMed:20427317,PubMed:18843296). May more specifically package GPI-anchoredproteins through the cargo receptor TMED10 (PubMed:20427317). Mayalso be specific for IxM motif-containing cargos like the SNAREsGOSR2 and STX5 (PubMed:18843296). {ECO:0000269|PubMed:17499046,ECO:0000269|PubMed:18843296, ECO:0000269|PubMed:20427317}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TPM3_SEC24D |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TPM3_SEC24D |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TPM3_SEC24D |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TPM3_SEC24D |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TPM3 | C1836448 | Nemaline myopathy 1 | 9 | CTD_human;ORPHANET;UNIPROT |
Hgene | TPM3 | C0546264 | Congenital Fiber Type Disproportion | 5 | ORPHANET;UNIPROT |
Hgene | TPM3 | C0024667 | Animal Mammary Neoplasms | 2 | CTD_human |
Hgene | TPM3 | C0024668 | Mammary Neoplasms, Experimental | 2 | CTD_human |
Hgene | TPM3 | C0001418 | Adenocarcinoma | 1 | CTD_human |
Hgene | TPM3 | C0009375 | Colonic Neoplasms | 1 | CTD_human |
Hgene | TPM3 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Hgene | TPM3 | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Hgene | TPM3 | C0040136 | Thyroid Neoplasm | 1 | CTD_human |
Tgene | SEC24D | C4225382 | COLE-CARPENTER SYNDROME 2 | 1 | UNIPROT |