FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 39140

FusionGeneSummary for TP53BP2_RPL30

check button Fusion gene summary
Fusion gene informationFusion gene name: TP53BP2_RPL30
Fusion gene ID: 39140
HgeneTgene
Gene symbol

TP53BP2

RPL30

Gene ID

7159

6156

Gene nametumor protein p53 binding protein 2ribosomal protein L30
Synonyms53BP2|ASPP2|BBP|P53BP2|PPP1R13AL30
Cytomap

1q41

8q22.2

Type of geneprotein-codingprotein-coding
Descriptionapoptosis-stimulating of p53 protein 2BCL2-binding proteinapoptosis-stimulating protein of p53, 2renal carcinoma antigen NY-REN-51tumor suppressor p53-binding protein 260S ribosomal protein L30large ribosomal subunit protein eL30
Modification date2018052320180523
UniProtAcc

Q13625

P62888

Ensembl transtripts involved in fusion geneENST00000391878, ENST00000343537, 
ENST00000391879, ENST00000498843, 
ENST00000518164, ENST00000521291, 
ENST00000396070, ENST00000287038, 
ENST00000523172, 
Fusion gene scores* DoF score3 X 3 X 3=2710 X 7 X 5=350
# samples 315
** MAII scorelog2(3/27*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0		log2(15/350*10)=-1.22239242133645
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: TP53BP2 [Title/Abstract] AND RPL30 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneTP53BP2

GO:0072332

intrinsic apoptotic signaling pathway by p53 class mediator

11684014

TgeneRPL30

GO:0002181

cytoplasmic translation

25957688

TgeneRPL30

GO:0031640

killing of cells of other organism

15019208

TgeneRPL30

GO:0050829

defense response to Gram-negative bacterium

15019208

TgeneRPL30

GO:0061844

antimicrobial humoral immune response mediated by antimicrobial peptide

15019208


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AW662691TP53BP2chr1

223968077

+RPL30chr8

99057760

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-5UTRENST00000391878ENST00000518164TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-intronENST00000391878ENST00000521291TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000391878ENST00000396070TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000391878ENST00000287038TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000391878ENST00000523172TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000343537ENST00000518164TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-intronENST00000343537ENST00000521291TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000343537ENST00000396070TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000343537ENST00000287038TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000343537ENST00000523172TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000391879ENST00000518164TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-intronENST00000391879ENST00000521291TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000391879ENST00000396070TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000391879ENST00000287038TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000391879ENST00000523172TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000498843ENST00000518164TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-intronENST00000498843ENST00000521291TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000498843ENST00000396070TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000498843ENST00000287038TP53BP2chr1

223968077

+RPL30chr8

99057760

-
intron-5UTRENST00000498843ENST00000523172TP53BP2chr1

223968077

+RPL30chr8

99057760

-

Top

FusionProtFeatures for TP53BP2_RPL30


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
TP53BP2

Q13625

RPL30

P62888

Regulator that plays a central role in regulation ofapoptosis and cell growth via its interactions. Regulates TP53 byenhancing the DNA binding and transactivation function of TP53 onthe promoters of proapoptotic genes in vivo. Inhibits the abilityof APPBP1 to conjugate NEDD8 to CUL1, and thereby decreases APPBP1ability to induce apoptosis. Impedes cell cycle progression atG2/M. Its apoptosis-stimulating activity is inhibited by itsinteraction with DDX42. {ECO:0000269|PubMed:11684014,ECO:0000269|PubMed:12694406, ECO:0000269|PubMed:19377511}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for TP53BP2_RPL30


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for TP53BP2_RPL30


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for TP53BP2_RPL30


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for TP53BP2_RPL30


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource