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Fusion gene ID: 39076 |
FusionGeneSummary for TOP1_CA10 |
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Fusion gene information | Fusion gene name: TOP1_CA10 | Fusion gene ID: 39076 | Hgene | Tgene | Gene symbol | TOP1 | CA10 | Gene ID | 7150 | 56934 |
Gene name | DNA topoisomerase I | carbonic anhydrase 10 | |
Synonyms | TOPI | CA-RPX|CARPX|HUCEP-15 | |
Cytomap | 20q12 | 17q21.33-q22 | |
Type of gene | protein-coding | protein-coding | |
Description | DNA topoisomerase 1topoisomerase (DNA) Itype I DNA topoisomerase | carbonic anhydrase-related protein 10CA-RP XCARP Xcarbonic anhydrase Xcarbonic anhydrase-related protein Xcerebral protein-15 | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | P11387 | Q9NS85 | |
Ensembl transtripts involved in fusion gene | ENST00000361337, | ENST00000570565, ENST00000442502, ENST00000340813, ENST00000451037, ENST00000285273, ENST00000571918, | |
Fusion gene scores | * DoF score | 9 X 4 X 7=252 | 18 X 7 X 8=1008 |
# samples | 9 | 18 | |
** MAII score | log2(9/252*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(18/1008*10)=-2.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TOP1 [Title/Abstract] AND CA10 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TOP1 | GO:0006265 | DNA topological change | 14594810 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | HNSC | TCGA-MZ-A7D7-01A | TOP1 | chr20 | 39658095 | + | CA10 | chr17 | 49825178 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000361337 | ENST00000570565 | TOP1 | chr20 | 39658095 | + | CA10 | chr17 | 49825178 | - |
Frame-shift | ENST00000361337 | ENST00000442502 | TOP1 | chr20 | 39658095 | + | CA10 | chr17 | 49825178 | - |
Frame-shift | ENST00000361337 | ENST00000340813 | TOP1 | chr20 | 39658095 | + | CA10 | chr17 | 49825178 | - |
Frame-shift | ENST00000361337 | ENST00000451037 | TOP1 | chr20 | 39658095 | + | CA10 | chr17 | 49825178 | - |
Frame-shift | ENST00000361337 | ENST00000285273 | TOP1 | chr20 | 39658095 | + | CA10 | chr17 | 49825178 | - |
5CDS-5UTR | ENST00000361337 | ENST00000571918 | TOP1 | chr20 | 39658095 | + | CA10 | chr17 | 49825178 | - |
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FusionProtFeatures for TOP1_CA10 |
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Hgene | Tgene |
TOP1 | CA10 |
Does not have a catalytic activity. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TOP1_CA10 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TOP1_CA10 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TOP1 | CSNK2A1, CSNK2A2, TP53, TAL1, NCL, SRSF1, BTBD1, BTBD2, TOPORS, SRSF11, SFPQ, UBE2I, CDT1, CDKN2A, RRP1B, H2AFY, PMS1, MGMT, HIST1H3E, H3F3A, MYC, ICT1, HDAC5, NOP56, NPM1, FBL, HIST1H1C, H1FX, HNRNPA1, HNRNPA2B1, HNRNPA3, HNRNPC, HNRNPK, HNRNPL, HNRNPR, ELAVL1, MKI67, NAT10, DHX9, NOP2, NONO, PARP1, DDX21, DDX17, SF3B3, SF3B1, TCOF1, SNRPA1, DDX23, EFTUD2, SNRNP200, PRPF8, OAS3, EIF2AK2, PCNA, HDGF, SIRT7, GTF3C1, XRCC5, CUL3, CDK2, CUL1, COPS5, CAND1, DDB2, ERCC8, ATM, IRF4, BARD1, ELK3, TARBP2, KMT2A, IRF8, IRF9, SNW1, PRB1, SNRNP70, U2AF2, LSM4, GEMIN4, CDK8, BUB3, RBL1, RBL2, GRWD1, SYMPK, JAK1, LIG4, PPP2R2B, TRIM32, RCVRN, PYGM, APAF1, CKAP5, TUBD1, PDE10A, APP, HNRNPM, RPS14, SNRPD1, IK, RBM39, SF3B6, SUPT16H, UTP20, S100A9, NCSTN, RBM14, TPR, ESR1, NKX3-1, VCP, PA2G4, VCAM1, IL7R, ITGA4, HDAC9, CDK14, TARDBP, SHFM1, ERG, MDM2, CUL7, OBSL1, EED, RNF2, EAF1, ZRANB2, APLF, NTRK1, RBM25, PWP1, RBM28, TOP2A, TOP2B, SCARNA22, FSHR, SRPK2, LAMB3, TRIM26, NLRP3, MCM5, NF2, CDC5L, PES1, POU5F1, EGFR, FNTA, ARID1A, PDGFRA, ROR1, PBRM1, TSC1, ERBB2, MTOR, BRCA1, CDK4, ESAM, CIDEC, SNRPG, PRICKLE3, DUS4L, GTF2E2, NR3C1, CHEK1, BRCA2, WEE1, PALB2, RAD17, LLGL1, MSH2, NF1, RPS11, CDC73, CDC6, MAP3K4, TTN, FH, COX15, DLST, PDHA1, VDAC1, TRIM25, LMNA | CA10 | PARL, MTHFD1, WDHD1, TSC22D1, IMPACT, ASS1, CALCOCO1, TOR1AIP1, PHYHIP, COL6A2, ABT1, INO80, ACTR10, MTERF4, G6PD, LYRM7, NRBP1, NSUN4, PSMG1, KCTD15, PIAS4, PSMG2, PSMG3, PSMG4, DCTN3, PPRC1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TOP1_CA10 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | TOP1 | P11387 | DB00762 | Irinotecan | DNA topoisomerase 1 | small molecule | approved|investigational |
Hgene | TOP1 | P11387 | DB01030 | Topotecan | DNA topoisomerase 1 | small molecule | approved|investigational |
Hgene | TOP1 | P11387 | DB05630 | Sodium stibogluconate | DNA topoisomerase 1 | small molecule | approved|investigational |
Tgene | CA10 | Q9NS85 | DB00909 | Zonisamide | Carbonic anhydrase-related protein 10 | small molecule | approved|investigational |
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RelatedDiseases for TOP1_CA10 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TOP1 | C0041755 | Adverse reaction to drug | 1 | CTD_human |