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Fusion gene ID: 39074 |
FusionGeneSummary for TOP1MT_SND1 |
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Fusion gene information | Fusion gene name: TOP1MT_SND1 | Fusion gene ID: 39074 | Hgene | Tgene | Gene symbol | TOP1MT | SND1 | Gene ID | 116447 | 27044 |
Gene name | DNA topoisomerase I mitochondrial | staphylococcal nuclease and tudor domain containing 1 | |
Synonyms | - | TDRD11|Tudor-SN|p100 | |
Cytomap | 8q24.3 | 7q32.1 | |
Type of gene | protein-coding | protein-coding | |
Description | DNA topoisomerase I, mitochondrialmitochondrial topoisomerase IBtopoisomerase (DNA) I, mitochondrial | staphylococcal nuclease domain-containing protein 1EBNA2 coactivator p100testis tissue sperm-binding protein Li 82Ptudor domain-containing protein 11 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q969P6 | Q7KZF4 | |
Ensembl transtripts involved in fusion gene | ENST00000521193, ENST00000519148, ENST00000505857, ENST00000329245, ENST00000523676, | ENST00000354725, ENST00000467238, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 20 X 15 X 10=3000 |
# samples | 1 | 21 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(21/3000*10)=-3.83650126771712 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TOP1MT [Title/Abstract] AND SND1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AW861197 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000521193 | ENST00000354725 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000521193 | ENST00000467238 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000519148 | ENST00000354725 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000519148 | ENST00000467238 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000505857 | ENST00000354725 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000505857 | ENST00000467238 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000329245 | ENST00000354725 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000329245 | ENST00000467238 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000523676 | ENST00000354725 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
intron-intron | ENST00000523676 | ENST00000467238 | TOP1MT | chr8 | 144392312 | + | SND1 | chr7 | 127507030 | + |
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FusionProtFeatures for TOP1MT_SND1 |
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Hgene | Tgene |
TOP1MT | SND1 |
Releases the supercoiling and torsional tension of DNAintroduced during duplication of mitochondrial DNA by transientlycleaving and rejoining one strand of the DNA duplex. Introduces asingle-strand break via transesterification at a target site induplex DNA. The scissile phosphodiester is attacked by thecatalytic tyrosine of the enzyme, resulting in the formation of aDNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a5'-OH DNA strand. The free DNA strand then rotates around theintact phosphodiester bond on the opposing strand, thus removingDNA supercoils. Finally, in the religation step, the DNA 5'-OHattacks the covalent intermediate to expel the active-sitetyrosine and restore the DNA phosphodiester backbone (Bysimilarity). {ECO:0000250, ECO:0000269|PubMed:11526219}. | Functions as a bridging factor between STAT6 and thebasal transcription factor. Plays a role in PIM1 regulation of MYBactivity. Functions as a transcriptional coactivator for theEpstein-Barr virus nuclear antigen 2 (EBNA2).{ECO:0000269|PubMed:7651391}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TOP1MT_SND1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TOP1MT_SND1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TOP1MT_SND1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | TOP1MT | Q969P6 | DB00762 | Irinotecan | DNA topoisomerase I, mitochondrial | small molecule | approved|investigational |
Hgene | TOP1MT | Q969P6 | DB01030 | Topotecan | DNA topoisomerase I, mitochondrial | small molecule | approved|investigational |
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RelatedDiseases for TOP1MT_SND1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | SND1 | C0004352 | Autistic Disorder | 1 | CTD_human |
Tgene | SND1 | C0024121 | Lung Neoplasms | 1 | CTD_human |