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Fusion gene ID: 38937 |
FusionGeneSummary for TNPO1_ZNF366 |
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Fusion gene information | Fusion gene name: TNPO1_ZNF366 | Fusion gene ID: 38937 | Hgene | Tgene | Gene symbol | TNPO1 | ZNF366 | Gene ID | 3842 | 167465 |
Gene name | transportin 1 | zinc finger protein 366 | |
Synonyms | IPO2|KPNB2|MIP|MIP1|TRN | DC-SCRIPT|DCSCRIPT | |
Cytomap | 5q13.2 | 5q13.2|5q13.2 | |
Type of gene | protein-coding | protein-coding | |
Description | transportin-1M9 region interaction proteinimportin 2importin beta 2karyopherin (importin) beta 2karyopherin beta-2 | zinc finger protein 366dendritic cell-specific transcript protein | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q92973 | Q8N895 | |
Ensembl transtripts involved in fusion gene | ENST00000337273, ENST00000454282, ENST00000447967, ENST00000523768, ENST00000513944, ENST00000506351, | ENST00000318442, | |
Fusion gene scores | * DoF score | 7 X 6 X 6=252 | 2 X 2 X 2=8 |
# samples | 8 | 2 | |
** MAII score | log2(8/252*10)=-1.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: TNPO1 [Title/Abstract] AND ZNF366 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ZNF366 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 17085477 |
Tgene | ZNF366 | GO:0033147 | negative regulation of intracellular estrogen receptor signaling pathway | 17085477 |
Tgene | ZNF366 | GO:0043627 | response to estrogen | 17085477 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SARC | TCGA-N1-A6IA-01A | TNPO1 | chr5 | 72157741 | + | ZNF366 | chr5 | 71757337 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000337273 | ENST00000318442 | TNPO1 | chr5 | 72157741 | + | ZNF366 | chr5 | 71757337 | - |
5CDS-5UTR | ENST00000454282 | ENST00000318442 | TNPO1 | chr5 | 72157741 | + | ZNF366 | chr5 | 71757337 | - |
intron-5UTR | ENST00000447967 | ENST00000318442 | TNPO1 | chr5 | 72157741 | + | ZNF366 | chr5 | 71757337 | - |
5CDS-5UTR | ENST00000523768 | ENST00000318442 | TNPO1 | chr5 | 72157741 | + | ZNF366 | chr5 | 71757337 | - |
5CDS-5UTR | ENST00000513944 | ENST00000318442 | TNPO1 | chr5 | 72157741 | + | ZNF366 | chr5 | 71757337 | - |
5CDS-5UTR | ENST00000506351 | ENST00000318442 | TNPO1 | chr5 | 72157741 | + | ZNF366 | chr5 | 71757337 | - |
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FusionProtFeatures for TNPO1_ZNF366 |
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Hgene | Tgene |
TNPO1 | ZNF366 |
Functions in nuclear protein import as nuclear transportreceptor. Serves as receptor for nuclear localization signals(NLS) in cargo substrates (PubMed:24753571). Is thought to mediatedocking of the importin/substrate complex to the nuclear porecomplex (NPC) through binding to nucleoporin and the complex issubsequently translocated through the pore by an energy requiring,Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ranbinds to the importin, the importin/substrate complex dissociatesand importin is re-exported from the nucleus to the cytoplasmwhere GTP hydrolysis releases Ran. The directionality of nuclearimport is thought to be conferred by an asymmetric distribution ofthe GTP- and GDP-bound forms of Ran between the cytoplasm andnucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region ofthe heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2and mediates their nuclear import. Appears also to be involved inhnRNP A1/A2 nuclear export. Mediates the nuclear import ofribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-likeimport receptor binding (BIB) domain of RPL23A. In vitro, mediatesnuclear import of H2A, H2B, H3 and H4 histones, and SRP19 (Bysimilarity). Mediates nuclear import of ADAR/ADAR1 isoform 1 andisoform 5 in a RanGTP-dependent manner (PubMed:19124606,PubMed:24753571). {ECO:0000250|UniProtKB:Q8BFY9,ECO:0000269|PubMed:11682607, ECO:0000269|PubMed:19124606,ECO:0000269|PubMed:24753571, ECO:0000269|PubMed:8986607,ECO:0000269|PubMed:9687515}. (Microbial infection) In case of HIV-1 infection, bindsand mediates the nuclear import of HIV-1 Rev.{ECO:0000269|PubMed:16704975}. | Has transcriptional repression activity. Acts ascorepressor of ESR1; the function seems to involve CTBP1 andhistone deacetylases. {ECO:0000269|PubMed:17085477}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TNPO1_ZNF366 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TNPO1_ZNF366 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TNPO1 | RGPD5, SRP19, RPL23A, RAN, NUP98, PABPN1, TCEA2, CD4, MME, HDAC5, SIRT7, NXF1, NDN, IPO5, VPS16, TNPO3, WRAP53, SNRPA, NOTCH1, CA9, LRRK2, NFATC2, ITGA4, SOX2, EGFR, IPO4, IPO7, IREB2, PPP2CA, IPO9, PPP3CA, RRM1, VBP1, TXNRD1, PHKG2, CUL7, OBSL1, CCDC8, CD274, VSIG2, TUSC5, HTR6, IPO8, RANBP6, BYSL, GAR1, TUBA4A, TUBB3, NTRK1, STIL, ERBB2, XRCC3, AKAP5, NUP153, TMEM63B, ENTHD2, MBOAT1, SUCO, CDC5L, SIGLECL1, TMA16, PTPRA, PTPRE, PTPRN, STOM, TRIM25, G3BP1, BRCA1 | ZNF366 | PSMA3, CEP70 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TNPO1_ZNF366 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TNPO1_ZNF366 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ZNF366 | C0236969 | Substance-Related Disorders | 1 | CTD_human |
Tgene | ZNF366 | C1458155 | Mammary Neoplasms | 1 | CTD_human |