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Fusion gene ID: 38758 |
FusionGeneSummary for TMPRSS2_KLF4 |
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Fusion gene information | Fusion gene name: TMPRSS2_KLF4 | Fusion gene ID: 38758 | Hgene | Tgene | Gene symbol | TMPRSS2 | KLF4 | Gene ID | 7113 | 9314 |
Gene name | transmembrane serine protease 2 | Kruppel like factor 4 | |
Synonyms | PP9284|PRSS10 | EZF|GKLF | |
Cytomap | 21q22.3 | 9q31.2 | |
Type of gene | protein-coding | protein-coding | |
Description | transmembrane protease serine 2epitheliasinserine protease 10transmembrane protease, serine 2 | Krueppel-like factor 4Kruppel-like factor 4 (gut)endothelial Kruppel-like zinc finger proteinepithelial zinc finger protein EZFgut Kruppel-like factorgut-enriched krueppel-like factor | |
Modification date | 20180523 | 20180527 | |
UniProtAcc | O15393 | O43474 | |
Ensembl transtripts involved in fusion gene | ENST00000332149, ENST00000398585, ENST00000458356, ENST00000497881, | ENST00000374672, | |
Fusion gene scores | * DoF score | 29 X 21 X 6=3654 | 3 X 3 X 2=18 |
# samples | 228 | 3 | |
** MAII score | log2(228/3654*10)=-0.680442809575384 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TMPRSS2 [Title/Abstract] AND KLF4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TMPRSS2 | GO:0006508 | proteolysis | 21068237|24227843 |
Hgene | TMPRSS2 | GO:0046598 | positive regulation of viral entry into host cell | 21068237|24227843 |
Tgene | KLF4 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 20551324 |
Tgene | KLF4 | GO:0016525 | negative regulation of angiogenesis | 23867820 |
Tgene | KLF4 | GO:0032088 | negative regulation of NF-kappaB transcription factor activity | 20551324 |
Tgene | KLF4 | GO:0034115 | negative regulation of heterotypic cell-cell adhesion | 20551324 |
Tgene | KLF4 | GO:0043154 | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process | 20551324 |
Tgene | KLF4 | GO:0045415 | negative regulation of interleukin-8 biosynthetic process | 20551324 |
Tgene | KLF4 | GO:0045892 | negative regulation of transcription, DNA-templated | 9422764 |
Tgene | KLF4 | GO:0045893 | positive regulation of transcription, DNA-templated | 27431648 |
Tgene | KLF4 | GO:0051973 | positive regulation of telomerase activity | 20629177 |
Tgene | KLF4 | GO:0060761 | negative regulation of response to cytokine stimulus | 20551324 |
Tgene | KLF4 | GO:0061614 | pri-miRNA transcription by RNA polymerase II | 23867820 |
Tgene | KLF4 | GO:0071363 | cellular response to growth factor stimulus | 20551324 |
Tgene | KLF4 | GO:0090051 | negative regulation of cell migration involved in sprouting angiogenesis | 20551324 |
Tgene | KLF4 | GO:2000134 | negative regulation of G1/S transition of mitotic cell cycle | 23867820 |
Tgene | KLF4 | GO:2000342 | negative regulation of chemokine (C-X-C motif) ligand 2 production | 20551324 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-G9-A9S7-01A | TMPRSS2 | chr21 | 42860321 | - | KLF4 | chr9 | 110251619 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000332149 | ENST00000374672 | TMPRSS2 | chr21 | 42860321 | - | KLF4 | chr9 | 110251619 | - |
5CDS-5UTR | ENST00000398585 | ENST00000374672 | TMPRSS2 | chr21 | 42860321 | - | KLF4 | chr9 | 110251619 | - |
5CDS-5UTR | ENST00000458356 | ENST00000374672 | TMPRSS2 | chr21 | 42860321 | - | KLF4 | chr9 | 110251619 | - |
intron-5UTR | ENST00000497881 | ENST00000374672 | TMPRSS2 | chr21 | 42860321 | - | KLF4 | chr9 | 110251619 | - |
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FusionProtFeatures for TMPRSS2_KLF4 |
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Hgene | Tgene |
TMPRSS2 | KLF4 |
Serine protease that proteolytically cleaves andactivates the viral spike glycoproteins which facilitate virus-cell membrane fusions; spike proteins are synthesized andmaintained in precursor intermediate folding states andproteolysis permits the refolding and energy release required tocreate stable virus-cell linkages and membrane coalescence.Facilitates human SARS coronavirus (SARS-CoV) infection via twoindependent mechanisms, proteolytic cleavage of ACE2, which mightpromote viral uptake, and cleavage of coronavirus spikeglycoprotein which activates the glycoprotein for cathepsin L-independent host cell entry. Proteolytically cleaves and activatesthe spike glycoproteins of human coronavirus 229E (HCoV-229E) andhuman coronavirus EMC (HCoV-EMC) and the fusion glycoproteins F0of Sendai virus (SeV), human metapneumovirus (HMPV), humanparainfluenza 1, 2, 3, 4a and 4b viruses (HPIV). Essential forspread and pathogenesis of influenza A virus (strains H1N1, H3N2and H7N9); involved in proteolytic cleavage and activation ofhemagglutinin (HA) protein which is essential for viralinfectivity. {ECO:0000269|PubMed:21068237,ECO:0000269|PubMed:21325420, ECO:0000269|PubMed:23536651,ECO:0000269|PubMed:23966399, ECO:0000269|PubMed:24027332,ECO:0000269|PubMed:24227843}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TMPRSS2_KLF4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TMPRSS2_KLF4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TMPRSS2 | CLK1 | KLF4 | CREBBP, KLF6, SP1, ELK1, HDAC5, HDAC2, HDAC1, EP300, KAT5, HDAC7, SMARCA4, PPARG, RELA, PRKCD, VHL, CUL2, TCEB2, APP, CTBP1, SETD7, CDH1, AURKA, FBXO22, CUL1, SKP1, HUWE1, FBXO32, BAALC |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TMPRSS2_KLF4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TMPRSS2_KLF4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TMPRSS2 | C0033578 | Prostatic Neoplasms | 2 | CTD_human |
Tgene | KLF4 | C0000768 | Congenital Abnormality | 1 | CTD_human |
Tgene | KLF4 | C0018798 | Congenital Heart Defects | 1 | CTD_human |
Tgene | KLF4 | C0040053 | Thrombosis | 1 | CTD_human |
Tgene | KLF4 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Tgene | KLF4 | C3495559 | Juvenile arthritis | 1 | CTD_human |