![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 38744 |
FusionGeneSummary for TMPRSS2_CALB1 |
![]() |
Fusion gene information | Fusion gene name: TMPRSS2_CALB1 | Fusion gene ID: 38744 | Hgene | Tgene | Gene symbol | TMPRSS2 | CALB1 | Gene ID | 7113 | 793 |
Gene name | transmembrane serine protease 2 | calbindin 1 | |
Synonyms | PP9284|PRSS10 | CALB|D-28K | |
Cytomap | 21q22.3 | 8q21.3 | |
Type of gene | protein-coding | protein-coding | |
Description | transmembrane protease serine 2epitheliasinserine protease 10transmembrane protease, serine 2 | calbindinRTVL-H proteincalbindin 1, (28kD)calbindin 1, 28kDacalbindin 27calbindin D28vitamin D-dependent calcium-binding protein, avian-type | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O15393 | P05937 | |
Ensembl transtripts involved in fusion gene | ENST00000332149, ENST00000398585, ENST00000458356, ENST00000497881, | ENST00000265431, ENST00000518457, | |
Fusion gene scores | * DoF score | 29 X 21 X 6=3654 | 2 X 2 X 2=8 |
# samples | 228 | 2 | |
** MAII score | log2(228/3654*10)=-0.680442809575384 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: TMPRSS2 [Title/Abstract] AND CALB1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TMPRSS2 | GO:0006508 | proteolysis | 21068237|24227843 |
Hgene | TMPRSS2 | GO:0046598 | positive regulation of viral entry into host cell | 21068237|24227843 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-EJ-A7NN-01A | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000332149 | ENST00000265431 | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
Frame-shift | ENST00000332149 | ENST00000518457 | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
Frame-shift | ENST00000398585 | ENST00000265431 | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
Frame-shift | ENST00000398585 | ENST00000518457 | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
In-frame | ENST00000458356 | ENST00000265431 | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
In-frame | ENST00000458356 | ENST00000518457 | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
intron-3CDS | ENST00000497881 | ENST00000265431 | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
intron-3CDS | ENST00000497881 | ENST00000518457 | TMPRSS2 | chr21 | 42848504 | - | CALB1 | chr8 | 91072928 | - |
Top |
FusionProtFeatures for TMPRSS2_CALB1 |
![]() |
Hgene | Tgene |
TMPRSS2 | CALB1 |
Serine protease that proteolytically cleaves andactivates the viral spike glycoproteins which facilitate virus-cell membrane fusions; spike proteins are synthesized andmaintained in precursor intermediate folding states andproteolysis permits the refolding and energy release required tocreate stable virus-cell linkages and membrane coalescence.Facilitates human SARS coronavirus (SARS-CoV) infection via twoindependent mechanisms, proteolytic cleavage of ACE2, which mightpromote viral uptake, and cleavage of coronavirus spikeglycoprotein which activates the glycoprotein for cathepsin L-independent host cell entry. Proteolytically cleaves and activatesthe spike glycoproteins of human coronavirus 229E (HCoV-229E) andhuman coronavirus EMC (HCoV-EMC) and the fusion glycoproteins F0of Sendai virus (SeV), human metapneumovirus (HMPV), humanparainfluenza 1, 2, 3, 4a and 4b viruses (HPIV). Essential forspread and pathogenesis of influenza A virus (strains H1N1, H3N2and H7N9); involved in proteolytic cleavage and activation ofhemagglutinin (HA) protein which is essential for viralinfectivity. {ECO:0000269|PubMed:21068237,ECO:0000269|PubMed:21325420, ECO:0000269|PubMed:23536651,ECO:0000269|PubMed:23966399, ECO:0000269|PubMed:24027332,ECO:0000269|PubMed:24227843}. | Buffers cytosolic calcium. May stimulate a membraneCa(2+)-ATPase and a 3',5'-cyclic nucleotide phosphodiesterase. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for TMPRSS2_CALB1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_TMPRSS2_ENST00000458356_chr21_42848504_-_CALB1_ENST00000265431_chr8_91072928_-_304aa MALNSGSPPAIGPYYENHGYQPENPYPAQPTVVPTVYEVHPAQYYPSPVPQYAPRVLTQASNPVVCTQPKSPSGTVCTSKTKKALCITLT LGTFLVGAALAAGLLWKFMGSKCSNSGIECDSSGTCINPSNWCDGVSHCPGGEDENRCVRLYGPNFILQVYSSQRKSWHPVCQDDWNENY GRAACRDMGYKNNFYSSQGIVDDSGSTSFMKLNTSAGNVDIYKKLYHSDACSSKAVVSLRCIGRQWIHRXKXTGCFTEGSVREEXTGSGY >In-frame_TMPRSS2_ENST00000458356_chr21_42848504_-_CALB1_ENST00000518457_chr8_91072928_-_304aa MALNSGSPPAIGPYYENHGYQPENPYPAQPTVVPTVYEVHPAQYYPSPVPQYAPRVLTQASNPVVCTQPKSPSGTVCTSKTKKALCITLT LGTFLVGAALAAGLLWKFMGSKCSNSGIECDSSGTCINPSNWCDGVSHCPGGEDENRCVRLYGPNFILQVYSSQRKSWHPVCQDDWNENY GRAACRDMGYKNNFYSSQGIVDDSGSTSFMKLNTSAGNVDIYKKLYHSDACSSKAVVSLRCIGRQWIHRXKXTGCFTEGSVREEXTGSGY |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_TMPRSS2_ENST00000458356_chr21_42848504_-_CALB1_ENST00000265431_chr8_91072928_-_913nt ATGGCTTTGAACTCAGGGTCACCACCAGCTATTGGACCTTACTATGAAAACCATGGATACCAACCGGAAAACCCCTATCCCGCACAGCCC ACTGTGGTCCCCACTGTCTACGAGGTGCATCCGGCTCAGTACTACCCGTCCCCCGTGCCCCAGTACGCCCCGAGGGTCCTGACGCAGGCT TCCAACCCCGTCGTCTGCACGCAGCCCAAATCCCCATCCGGGACAGTGTGCACCTCAAAGACTAAGAAAGCACTGTGCATCACCTTGACC CTGGGGACCTTCCTCGTGGGAGCTGCGCTGGCCGCTGGCCTACTCTGGAAGTTCATGGGCAGCAAGTGCTCCAACTCTGGGATAGAGTGC GACTCCTCAGGTACCTGCATCAACCCCTCTAACTGGTGTGATGGCGTGTCACACTGCCCCGGCGGGGAGGACGAGAATCGGTGTGTTCGC CTCTACGGACCAAACTTCATCCTTCAGGTGTACTCATCTCAGAGGAAGTCCTGGCACCCTGTGTGCCAAGACGACTGGAACGAGAACTAC GGGCGGGCGGCCTGCAGGGACATGGGCTATAAGAATAATTTTTACTCTAGCCAAGGAATAGTGGATGACAGCGGATCCACCAGCTTTATG AAACTGAACACAAGTGCCGGCAATGTCGATATCTATAAAAAACTGTACCACAGTGATGCCTGTTCTTCAAAAGCAGTGGTTTCTTTACGC TGTATAGGACGGCAATGGATACATAGATGAAAATGAACTGGATGCTTTACTGAAGGATCTGTGCGAGAAGAATAAACAGGATCTGGATAT TAATAATATTACAACATACAAGAAGAACATAATGGCTTTGTCGGATGGAGGGAAGCTGTACCGAACGGATCTTGCTCTTATTCTCTGTGC >In-frame_TMPRSS2_ENST00000458356_chr21_42848504_-_CALB1_ENST00000518457_chr8_91072928_-_913nt ATGGCTTTGAACTCAGGGTCACCACCAGCTATTGGACCTTACTATGAAAACCATGGATACCAACCGGAAAACCCCTATCCCGCACAGCCC ACTGTGGTCCCCACTGTCTACGAGGTGCATCCGGCTCAGTACTACCCGTCCCCCGTGCCCCAGTACGCCCCGAGGGTCCTGACGCAGGCT TCCAACCCCGTCGTCTGCACGCAGCCCAAATCCCCATCCGGGACAGTGTGCACCTCAAAGACTAAGAAAGCACTGTGCATCACCTTGACC CTGGGGACCTTCCTCGTGGGAGCTGCGCTGGCCGCTGGCCTACTCTGGAAGTTCATGGGCAGCAAGTGCTCCAACTCTGGGATAGAGTGC GACTCCTCAGGTACCTGCATCAACCCCTCTAACTGGTGTGATGGCGTGTCACACTGCCCCGGCGGGGAGGACGAGAATCGGTGTGTTCGC CTCTACGGACCAAACTTCATCCTTCAGGTGTACTCATCTCAGAGGAAGTCCTGGCACCCTGTGTGCCAAGACGACTGGAACGAGAACTAC GGGCGGGCGGCCTGCAGGGACATGGGCTATAAGAATAATTTTTACTCTAGCCAAGGAATAGTGGATGACAGCGGATCCACCAGCTTTATG AAACTGAACACAAGTGCCGGCAATGTCGATATCTATAAAAAACTGTACCACAGTGATGCCTGTTCTTCAAAAGCAGTGGTTTCTTTACGC TGTATAGGACGGCAATGGATACATAGATGAAAATGAACTGGATGCTTTACTGAAGGATCTGTGCGAGAAGAATAAACAGGATCTGGATAT TAATAATATTACAACATACAAGAAGAACATAATGGCTTTGTCGGATGGAGGGAAGCTGTACCGAACGGATCTTGCTCTTATTCTCTGTGC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_TMPRSS2_ENST00000458356_chr21_42848504_-_CALB1_ENST00000265431_chr8_91072928_-_2567nt GTGAAAGCGGGTGTGAGGAGCGCGGCGCGGCAGGTCATATTGAACATTCCAGATACCTATCATTACTCGATGCTGTTGATAACAGCAAGA TGGCTTTGAACTCAGGGTCACCACCAGCTATTGGACCTTACTATGAAAACCATGGATACCAACCGGAAAACCCCTATCCCGCACAGCCCA CTGTGGTCCCCACTGTCTACGAGGTGCATCCGGCTCAGTACTACCCGTCCCCCGTGCCCCAGTACGCCCCGAGGGTCCTGACGCAGGCTT CCAACCCCGTCGTCTGCACGCAGCCCAAATCCCCATCCGGGACAGTGTGCACCTCAAAGACTAAGAAAGCACTGTGCATCACCTTGACCC TGGGGACCTTCCTCGTGGGAGCTGCGCTGGCCGCTGGCCTACTCTGGAAGTTCATGGGCAGCAAGTGCTCCAACTCTGGGATAGAGTGCG ACTCCTCAGGTACCTGCATCAACCCCTCTAACTGGTGTGATGGCGTGTCACACTGCCCCGGCGGGGAGGACGAGAATCGGTGTGTTCGCC TCTACGGACCAAACTTCATCCTTCAGGTGTACTCATCTCAGAGGAAGTCCTGGCACCCTGTGTGCCAAGACGACTGGAACGAGAACTACG GGCGGGCGGCCTGCAGGGACATGGGCTATAAGAATAATTTTTACTCTAGCCAAGGAATAGTGGATGACAGCGGATCCACCAGCTTTATGA AACTGAACACAAGTGCCGGCAATGTCGATATCTATAAAAAACTGTACCACAGTGATGCCTGTTCTTCAAAAGCAGTGGTTTCTTTACGCT GTATAGGACGGCAATGGATACATAGATGAAAATGAACTGGATGCTTTACTGAAGGATCTGTGCGAGAAGAATAAACAGGATCTGGATATT AATAATATTACAACATACAAGAAGAACATAATGGCTTTGTCGGATGGAGGGAAGCTGTACCGAACGGATCTTGCTCTTATTCTCTGTGCT GGGGATAACTAGAGTTGGTGGCCGCAACCACTTGCTAGTGATACACTGTATCTAAAAAATAACTGTGCACTATAAGGGAGTAGGCTGTAT TTTCTTTTATATCTGTAAATTTAACTGCATATAGATAATTATCCAGGATGTGTGGCTCATTCTTTTCAGCTTGTTTCTATACTGTTTGTA ATATACAGTTTTTGTAACCATATGATTGAAAAGAAGAAAGTCTATGCTTAGGCCAGTCAGTACACCCAATTTTAAAAAATAACATATTCT TGCTTTCACAAATATAGTTGAACAAGATTTCCCTAAAAATTCCACCAGGATTAATCTCTAAAATTCTAGTCTCTGATTTGCAAATGCACA TTTGTCACTGAATAATGGAATTATGTATAACAAGCCAAACATTCTTATTTTAGACAACCATAGAACTGTCCCACAAAATATTTCTAAGCT TATTTCTAACTATTAGGAGGAATGTGCTTTTCCATCTAAAATACTCACCAAAATATAGTTAATTGTGGCTTTATGAAGTTAACAGTCTCA TTACAGATTTAGTTTACCAATCAACAGCATGTCTACTGCTTGGATCCATACAAAACTATCGGTTCAAGTTGATGTGACAAGGGAAGGGAG CACCAGATGACACATAAATCTGTCTGATTCTATGCCTGTATTTCCAACAAACTTACTGTCAGAGAATATGACCTAAATCCATTTTCTAAA CTGTTTTCATGTGTTGCAAATTATTCTAGTCAACTGCTGTTTTATGTCATACTCTGTGTAATCTCTGATTAAATTTAATATACTGCATAT CCTGGTGTCTAGTTTGCATACTTCCTGGATTTTCTTTCTATGTAGAACTGTTCATTTCCACCAAGGGTATCTGCTGCCTCTGAAAATATT TTTTTCTAGCTATAACAACTCTATTTTTTACTACATAATTAAATTTTAATGTAAAATTCATAGCATCCTGATTATTGAATGTTATATCAT CAATACTTTTGTGTATTCTGTGGATTCTATATTTCATATTGAGATCAGCATTCAAAATAGTTCTATTTCTATCTGCAAATAGTTTCAAAT GAGTTTAAAAAAATAACATCTGAAAAGAAATGCTAATGTAATCATTTATCTTATCTAGCAAGAAGATTCTAAAACATTCTTTAACATACA TCTAAGTCAGTTTCACATATTTGTAGCTAGAATATCCTATACTGGTTATAGTTGATATGTAACAGTTGGTGATTTTAGATTTCTTTGATT GTGAAACAGGGAGCTATGAGAGATGTGTCCATGTGAAATTTACAGTTACTGCCTAGGAGTTAATGATCGTTCTGGGTCAGCTTGAATGTC CCCATTCTATAAATTCAACACTTATTTTCTGAATTCATAAAAATAACCAAAAAATGTGAGCTATAATGTTTCCCTCAAGAACAAACAGAA ACGAGATTTGCCAAAAACTAAAATTCAACAAATGATGTTGAGTGGGAGATTGGCTTTGCCTTTAGCGTGTAAATGGAAGCACTGCCATTA >In-frame_TMPRSS2_ENST00000458356_chr21_42848504_-_CALB1_ENST00000518457_chr8_91072928_-_1756nt GTGAAAGCGGGTGTGAGGAGCGCGGCGCGGCAGGTCATATTGAACATTCCAGATACCTATCATTACTCGATGCTGTTGATAACAGCAAGA TGGCTTTGAACTCAGGGTCACCACCAGCTATTGGACCTTACTATGAAAACCATGGATACCAACCGGAAAACCCCTATCCCGCACAGCCCA CTGTGGTCCCCACTGTCTACGAGGTGCATCCGGCTCAGTACTACCCGTCCCCCGTGCCCCAGTACGCCCCGAGGGTCCTGACGCAGGCTT CCAACCCCGTCGTCTGCACGCAGCCCAAATCCCCATCCGGGACAGTGTGCACCTCAAAGACTAAGAAAGCACTGTGCATCACCTTGACCC TGGGGACCTTCCTCGTGGGAGCTGCGCTGGCCGCTGGCCTACTCTGGAAGTTCATGGGCAGCAAGTGCTCCAACTCTGGGATAGAGTGCG ACTCCTCAGGTACCTGCATCAACCCCTCTAACTGGTGTGATGGCGTGTCACACTGCCCCGGCGGGGAGGACGAGAATCGGTGTGTTCGCC TCTACGGACCAAACTTCATCCTTCAGGTGTACTCATCTCAGAGGAAGTCCTGGCACCCTGTGTGCCAAGACGACTGGAACGAGAACTACG GGCGGGCGGCCTGCAGGGACATGGGCTATAAGAATAATTTTTACTCTAGCCAAGGAATAGTGGATGACAGCGGATCCACCAGCTTTATGA AACTGAACACAAGTGCCGGCAATGTCGATATCTATAAAAAACTGTACCACAGTGATGCCTGTTCTTCAAAAGCAGTGGTTTCTTTACGCT GTATAGGACGGCAATGGATACATAGATGAAAATGAACTGGATGCTTTACTGAAGGATCTGTGCGAGAAGAATAAACAGGATCTGGATATT AATAATATTACAACATACAAGAAGAACATAATGGCTTTGTCGGATGGAGGGAAGCTGTACCGAACGGATCTTGCTCTTATTCTCTGTGCT GGGGATAACTAGAGTTGGTGGCCGCAACCACTTGCTAGTGATACACTGTATCTAAAAAATAACTGTGCACTATAAGGGAGTAGGCTGTAT TTTCTTTTATATCTGTAAATTTAACTGCATATAGATAATTATCCAGGATGTGTGGCTCATTCTTTTCAGCTTGTTTCTATACTGTTTGTA ATATACAGTTTTTGTAACCATATGATTGAAAAGAAGAAAGTCTATGCTTAGGCCAGTCAGTACACCCAATTTTAAAAAATAACATATTCT TGCTTTCACAAATATAGTTGAACAAGATTTCCCTAAAAATTCCACCAGGATTAATCTCTAAAATTCTAGTCTCTGATTTGCAAATGCACA TTTGTCACTGAATAATGGAATTATGTATAACAAGCCAAACATTCTTATTTTAGACAACCATAGAACTGTCCCACAAAATATTTCTAAGCT TATTTCTAACTATTAGGAGGAATGTGCTTTTCCATCTAAAATACTCACCAAAATATAGTTAATTGTGGCTTTATGAAGTTAACAGTCTCA TTACAGATTTAGTTTACCAATCAACAGCATGTCTACTGCTTGGATCCATACAAAACTATCGGTTCAAGTTGATGTGACAAGGGAAGGGAG CACCAGATGACACATAAATCTGTCTGATTCTATGCCTGTATTTCCAACAAACTTACTGTCAGAGAATATGACCTAAATCCATTTTCTAAA |
Top |
FusionGenePPI for TMPRSS2_CALB1 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TMPRSS2 | CLK1 | CALB1 | RANBP9, IMPA1, IKBKG, CACNA1D, IQCB1 |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for TMPRSS2_CALB1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for TMPRSS2_CALB1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TMPRSS2 | C0033578 | Prostatic Neoplasms | 2 | CTD_human |
Tgene | CALB1 | C0005586 | Bipolar Disorder | 2 | PSYGENET |
Tgene | CALB1 | C0022658 | Kidney Diseases | 2 | CTD_human |
Tgene | CALB1 | C0036341 | Schizophrenia | 2 | PSYGENET |