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Fusion gene ID: 38565 |
FusionGeneSummary for TMEM242_GTF2H5 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TMEM242_GTF2H5 | Fusion gene ID: 38565 | Hgene | Tgene | Gene symbol | TMEM242 | GTF2H5 | Gene ID | 729515 | 404672 |
| Gene name | transmembrane protein 242 | general transcription factor IIH subunit 5 | |
| Synonyms | BM033|C6orf35 | C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 | |
| Cytomap | 6q25.3 | 6q25.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | transmembrane protein 242UPF0463 transmembrane protein C6orf35 | general transcription factor IIH subunit 5TFB5 orthologTFIIH basal transcription factor complex TTD-A subunitTFIIH basal transcription factor complex TTDA subunitgeneral transcription factor IIH, polypeptide 5 | |
| Modification date | 20180519 | 20180522 | |
| UniProtAcc | Q9NWH2 | Q6ZYL4 | |
| Ensembl transtripts involved in fusion gene | ENST00000400788, ENST00000367144, | ENST00000607778, | |
| Fusion gene scores | * DoF score | 3 X 1 X 3=9 | 5 X 2 X 4=40 |
| # samples | 3 | 6 | |
| ** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(6/40*10)=0.584962500721156 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: TMEM242 [Title/Abstract] AND GTF2H5 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | LUSC | TCGA-66-2759-01A | TMEM242 | chr6 | 157739814 | - | GTF2H5 | chr6 | 158591502 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000400788 | ENST00000607778 | TMEM242 | chr6 | 157739814 | - | GTF2H5 | chr6 | 158591502 | + |
| intron-5UTR | ENST00000367144 | ENST00000607778 | TMEM242 | chr6 | 157739814 | - | GTF2H5 | chr6 | 158591502 | + |
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FusionProtFeatures for TMEM242_GTF2H5 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TMEM242 | GTF2H5 |
| Component of the general transcription and DNA repairfactor IIH (TFIIH) core complex, which is involved in general andtranscription-coupled nucleotide excision repair (NER) of damagedDNA and, when complexed to CAK, in RNA transcription by RNApolymerase II. In NER, TFIIH acts by opening DNA around the lesionto allow the excision of the damaged oligonucleotide and itsreplacement by a new DNA fragment. In transcription, TFIIH has anessential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is requiredfor promoter opening and promoter escape. Phosphorylation of theC-terminal tail (CTD) of the largest subunit of RNA polymerase IIby the kinase module CAK controls the initiation of transcription.Necessary for the stability of the TFIIH complex and for thepresence of normal levels of TFIIH in the cell.{ECO:0000269|PubMed:15220921}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TMEM242_GTF2H5 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TMEM242_GTF2H5 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| TMEM242 | VKORC1, GGT7, RNF5, SLC22A9, SLC2A12, TMEM63A, TRIM25 | GTF2H5 | CDK7, ERCC3, GTF2H2, UNK, CCNH, ERCC2, ERCC5, GTF2H1, GTF2H3, GTF2H4, ITPR1, MNAT1, NUP98, PPP1R2, RNF40, HARS2, CDCA3, GTF2H2C_2 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TMEM242_GTF2H5 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TMEM242_GTF2H5 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | GTF2H5 | C4017171 | TRICHOTHIODYSTROPHY 3, PHOTOSENSITIVE | 1 | UNIPROT |
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