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Fusion gene ID: 38367 |
FusionGeneSummary for TMEM117_COL25A1 |
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Fusion gene information | Fusion gene name: TMEM117_COL25A1 | Fusion gene ID: 38367 | Hgene | Tgene | Gene symbol | TMEM117 | COL25A1 | Gene ID | 84216 | 84570 |
Gene name | transmembrane protein 117 | collagen type XXV alpha 1 chain | |
Synonyms | - | AMY|CFEOM5|CLAC|CLAC-P|CLACP | |
Cytomap | 12q12 | 4q25 | |
Type of gene | protein-coding | protein-coding | |
Description | transmembrane protein 117 | collagen alpha-1(XXV) chainalzheimer disease amyloid-associated proteincollagen-like Alzheimer amyloid plaque componentcollagenous Alzheimer amyloid plaque component | |
Modification date | 20180329 | 20180523 | |
UniProtAcc | Q9H0C3 | Q9BXS0 | |
Ensembl transtripts involved in fusion gene | ENST00000551577, ENST00000266534, ENST00000536799, ENST00000546978, | ENST00000399132, ENST00000399127, ENST00000399126, | |
Fusion gene scores | * DoF score | 11 X 6 X 7=462 | 3 X 3 X 3=27 |
# samples | 11 | 3 | |
** MAII score | log2(11/462*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TMEM117 [Title/Abstract] AND COL25A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-EE-A20I-06A | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000551577 | ENST00000399132 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
5CDS-intron | ENST00000551577 | ENST00000399127 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
5CDS-intron | ENST00000551577 | ENST00000399126 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
Frame-shift | ENST00000266534 | ENST00000399132 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
5CDS-intron | ENST00000266534 | ENST00000399127 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
5CDS-intron | ENST00000266534 | ENST00000399126 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
In-frame | ENST00000536799 | ENST00000399132 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
5CDS-intron | ENST00000536799 | ENST00000399127 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
5CDS-intron | ENST00000536799 | ENST00000399126 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
intron-3CDS | ENST00000546978 | ENST00000399132 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
intron-intron | ENST00000546978 | ENST00000399127 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
intron-intron | ENST00000546978 | ENST00000399126 | TMEM117 | chr12 | 44338145 | + | COL25A1 | chr4 | 109862593 | - |
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FusionProtFeatures for TMEM117_COL25A1 |
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Hgene | Tgene |
TMEM117 | COL25A1 |
Involved in endoplasmic reticulum (ER) stress-inducedcell death pathway. {ECO:0000269|PubMed:28285135}. | Inhibits fibrillization of amyloid-beta peptide duringthe elongation phase. Has also been shown to assemble amyloidfibrils into protease-resistant aggregates. Binds heparin.{ECO:0000269|PubMed:15522881, ECO:0000269|PubMed:15615705,ECO:0000269|PubMed:15853808, ECO:0000269|PubMed:16300410}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TMEM117_COL25A1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_TMEM117_ENST00000536799_chr12_44338145_+_COL25A1_ENST00000399132_chr4_109862593_-_557aa MATCHSHRTNSWQISVPSAFVWSVAPIKNVSRRSWVVDDNVLQHNSLSLHIFSHIQHDSSNGWEHGMVFPKINHGFLSADQQLIKRRLIK GDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPK GEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAG PPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQG LQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGL PGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAP |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_TMEM117_ENST00000536799_chr12_44338145_+_COL25A1_ENST00000399132_chr4_109862593_-_1671nt ATGGCTACTTGCCATTCTCACAGGACTAATAGCTGGCAAATTTCTGTTCCATCAGCGTTTGTTTGGTCAGTTGCTCCGATTAAAAATGTT TCGAGAAGATCATGGGTCGTGGATGACAATGTTCTTCAGCACAATTCTCTTTCTCTTCATATTTTCTCACATATACAACACGATTCTTCT AATGGATGGGAACATGGGATGGTGTTTCCTAAAATCAATCATGGGTTTCTCTCTGCTGATCAGCAGCTCATTAAACGCCGCCTGATTAAG GGTGACCAAGGACAGGCAGGGCCTCCAGGACCCCCTGGCCCTCCAGGCCCAAGAGGGCCACCTGGGGACACAGGGAAAGATGGCCCCCGT GGAATGCCAGGAGTACCCGGTGAACCAGGAAAGCCAGGAGAACAAGGCTTGATGGGTCCTCTAGGGCCTCCGGGACAAAAGGGTTCTATT GGAGCACCTGGAATTCCAGGGATGAATGGGCAAAAGGGTGAGCCCGGGTTGCCTGGAGCAGTAGGACAGAATGGAATACCAGGACCTAAG GGAGAACCTGGAGAACAAGGTGAAAAGGGAGACGCTGGAGAGAACGGCCCCAAGGGTGACACAGGCGAAAAGGGTGACCCTGGATCATCT GCTGCAGGAATTAAGGGAGAACCTGGGGAATCTGGTCGTCCAGGGCAAAAGGGTGAACCAGGGCTTCCTGGGCTTCCTGGACTTCCGGGG ATAAAGGGAGAACCAGGTTTCATTGGTCCTCAAGGAGAACCAGGCTTACCAGGTTTACCAGGAACAAAAGGTGAACGGGGGGAAGCAGGG CCTCCTGGAAGAGGTGAGCGAGGGGAACCTGGAGCCCCCGGACCAAAGGGGAAACAAGGTGAATCAGGAACTAGAGGCCCAAAGGGGTCA AAGGGGGATCGTGGAGAAAAAGGGGACTCTGGAGCTCAGGGACCAAGGGGTCCACCTGGTCAAAAAGGGGATCAAGGAGCCACTGAGATC ATAGACTACAACGGCAACCTCCACGAAGCCTTACAGAGGATTACCACCTTAACTGTCACGGGTCCCCCTGGACCTCCTGGACCTCAAGGA CTACAAGGGCCAAAGGGAGAGCAGGGATCTCCAGGAATCCCAGGAATGGATGGAGAGCAGGGACTCAAAGGCTCAAAGGGAGACATGGGG GACCCAGGTATGACAGGTGAAAAAGGAGGAATTGGACTTCCTGGATTACCGGGAGCCAATGGAATGAAAGGAGAAAAAGGAGATTCTGGA ATGCCGGGTCCACAGGGTCCTTCTATCATAGGCCCACCAGGCCCACCAGGTCCCCATGGCCCACCTGGCCCCATGGGACCTCATGGACTT CCTGGACCAAAGGGTACAGATGGTCCTATGGGACCCCATGGCCCTGCAGGTCCCAAAGGAGAAAGAGGTGAAAAAGGAGCTATGGGAGAG CCTGGACCAAGAGGGCCCTATGGGCTGCCTGGGAAAGATGGAGAGCCTGGTCTTGATGGCTTCCCTGGTCCACGGGGTGAGAAGGGTGAT CTAGGAGAAAAGGGAGAAAAGGGATTCCGTGGCGTTAAGGGGGAAAAAGGGGAGCCAGGCCAGCCTGGCCTGGATGGGCTGGATGCCCCT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_TMEM117_ENST00000536799_chr12_44338145_+_COL25A1_ENST00000399132_chr4_109862593_-_1899nt ATGGCTACTTGCCATTCTCACAGGACTAATAGCTGGCAAATTTCTGTTCCATCAGCGTTTGTTTGGTCAGTTGCTCCGATTAAAAATGTT TCGAGAAGATCATGGGTCGTGGATGACAATGTTCTTCAGCACAATTCTCTTTCTCTTCATATTTTCTCACATATACAACACGATTCTTCT AATGGATGGGAACATGGGATGGTGTTTCCTAAAATCAATCATGGGTTTCTCTCTGCTGATCAGCAGCTCATTAAACGCCGCCTGATTAAG GGTGACCAAGGACAGGCAGGGCCTCCAGGACCCCCTGGCCCTCCAGGCCCAAGAGGGCCACCTGGGGACACAGGGAAAGATGGCCCCCGT GGAATGCCAGGAGTACCCGGTGAACCAGGAAAGCCAGGAGAACAAGGCTTGATGGGTCCTCTAGGGCCTCCGGGACAAAAGGGTTCTATT GGAGCACCTGGAATTCCAGGGATGAATGGGCAAAAGGGTGAGCCCGGGTTGCCTGGAGCAGTAGGACAGAATGGAATACCAGGACCTAAG GGAGAACCTGGAGAACAAGGTGAAAAGGGAGACGCTGGAGAGAACGGCCCCAAGGGTGACACAGGCGAAAAGGGTGACCCTGGATCATCT GCTGCAGGAATTAAGGGAGAACCTGGGGAATCTGGTCGTCCAGGGCAAAAGGGTGAACCAGGGCTTCCTGGGCTTCCTGGACTTCCGGGG ATAAAGGGAGAACCAGGTTTCATTGGTCCTCAAGGAGAACCAGGCTTACCAGGTTTACCAGGAACAAAAGGTGAACGGGGGGAAGCAGGG CCTCCTGGAAGAGGTGAGCGAGGGGAACCTGGAGCCCCCGGACCAAAGGGGAAACAAGGTGAATCAGGAACTAGAGGCCCAAAGGGGTCA AAGGGGGATCGTGGAGAAAAAGGGGACTCTGGAGCTCAGGGACCAAGGGGTCCACCTGGTCAAAAAGGGGATCAAGGAGCCACTGAGATC ATAGACTACAACGGCAACCTCCACGAAGCCTTACAGAGGATTACCACCTTAACTGTCACGGGTCCCCCTGGACCTCCTGGACCTCAAGGA CTACAAGGGCCAAAGGGAGAGCAGGGATCTCCAGGAATCCCAGGAATGGATGGAGAGCAGGGACTCAAAGGCTCAAAGGGAGACATGGGG GACCCAGGTATGACAGGTGAAAAAGGAGGAATTGGACTTCCTGGATTACCGGGAGCCAATGGAATGAAAGGAGAAAAAGGAGATTCTGGA ATGCCGGGTCCACAGGGTCCTTCTATCATAGGCCCACCAGGCCCACCAGGTCCCCATGGCCCACCTGGCCCCATGGGACCTCATGGACTT CCTGGACCAAAGGGTACAGATGGTCCTATGGGACCCCATGGCCCTGCAGGTCCCAAAGGAGAAAGAGGTGAAAAAGGAGCTATGGGAGAG CCTGGACCAAGAGGGCCCTATGGGCTGCCTGGGAAAGATGGAGAGCCTGGTCTTGATGGCTTCCCTGGTCCACGGGGTGAGAAGGGTGAT CTAGGAGAAAAGGGAGAAAAGGGATTCCGTGGCGTTAAGGGGGAAAAAGGGGAGCCAGGCCAGCCTGGCCTGGATGGGCTGGATGCCCCT TGCCAATTGGGGCCAGATGGCTTACCCATGCCTGGCTGTTGGCAAAAGTGATGAATCTAACCTTTCAAGCATGAAGTTGTGTATATAAGG GTCCATTTTTAATATTTATAGTTGAAAACTGAATTGCAGATTTTACAAGTCTGAGATATGTTTACATAGGGCTGCTTCTTCCTGCTGGCA GTAGTATACATGTCCATTTTTACTCCACTTACATCTGAAATTGGGCAATTTGTGAAACCAGTGAGAATCCTGCAAAAAATATAGATCAGT |
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FusionGenePPI for TMEM117_COL25A1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TMEM117 | COL25A1 | APP, COL25A1, PLOD1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TMEM117_COL25A1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TMEM117_COL25A1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TMEM117 | C0008370 | Cholestasis | 1 | CTD_human |
Hgene | TMEM117 | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
Tgene | COL25A1 | C4015552 | FIBROSIS OF EXTRAOCULAR MUSCLES, CONGENITAL, 5 | 1 | UNIPROT |