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Fusion gene ID: 38329 |
FusionGeneSummary for TMED3_MCPH1 |
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Fusion gene information | Fusion gene name: TMED3_MCPH1 | Fusion gene ID: 38329 | Hgene | Tgene | Gene symbol | TMED3 | MCPH1 | Gene ID | 23423 | 79648 |
Gene name | transmembrane p24 trafficking protein 3 | microcephalin 1 | |
Synonyms | C15orf22|P24B|p24g4|p24gamma4|p26 | BRIT1|MCT | |
Cytomap | 15q25.1 | 8p23.1 | |
Type of gene | protein-coding | protein-coding | |
Description | transmembrane emp24 domain-containing protein 3integral type I proteinmembrane protein p24Bp24 family protein gamma-4testis tissue sperm-binding protein Li 48etransmembrane emp24 protein transport domain containing 3 | microcephalinBRCT-repeat inhibitor of TERT expression 1truncated microcephalin | |
Modification date | 20180529 | 20180519 | |
UniProtAcc | Q9Y3Q3 | Q8NEM0 | |
Ensembl transtripts involved in fusion gene | ENST00000424155, ENST00000299705, ENST00000536821, ENST00000558562, | ENST00000344683, ENST00000519480, ENST00000522905, ENST00000521175, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 3 X 4 X 2=24 |
# samples | 2 | 4 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TMED3 [Title/Abstract] AND MCPH1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | MCPH1 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 12837246 |
Tgene | MCPH1 | GO:0071850 | mitotic cell cycle arrest | 24633962 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DB292767 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000424155 | ENST00000344683 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
intron-intron | ENST00000424155 | ENST00000519480 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
intron-intron | ENST00000424155 | ENST00000522905 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
intron-intron | ENST00000424155 | ENST00000521175 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
3UTR-intron | ENST00000299705 | ENST00000344683 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
3UTR-intron | ENST00000299705 | ENST00000519480 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
3UTR-intron | ENST00000299705 | ENST00000522905 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
3UTR-intron | ENST00000299705 | ENST00000521175 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
intron-intron | ENST00000536821 | ENST00000344683 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
intron-intron | ENST00000536821 | ENST00000519480 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
intron-intron | ENST00000536821 | ENST00000522905 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
intron-intron | ENST00000536821 | ENST00000521175 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
3UTR-intron | ENST00000558562 | ENST00000344683 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
3UTR-intron | ENST00000558562 | ENST00000519480 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
3UTR-intron | ENST00000558562 | ENST00000522905 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
3UTR-intron | ENST00000558562 | ENST00000521175 | TMED3 | chr15 | 79614830 | + | MCPH1 | chr8 | 6372269 | - |
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FusionProtFeatures for TMED3_MCPH1 |
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Hgene | Tgene |
TMED3 | MCPH1 |
Potential role in vesicular protein trafficking, mainlyin the early secretory pathway. Contributes to the coupledlocalization of TMED2 and TMED10 in the cis-Golgi network.{ECO:0000269|PubMed:10852829}. | Implicated in chromosome condensation and DNA damageinduced cellular responses. May play a role in neurogenesis andregulation of the size of the cerebral cortex.{ECO:0000269|PubMed:12046007, ECO:0000269|PubMed:15199523,ECO:0000269|PubMed:15220350}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TMED3_MCPH1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TMED3_MCPH1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TMED3_MCPH1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TMED3_MCPH1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | MCPH1 | C1855081 | MICROCEPHALY, PRIMARY AUTOSOMAL RECESSIVE, 1 | 1 | CTD_human;ORPHANET;UNIPROT |