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Fusion gene ID: 38312 |
FusionGeneSummary for TMCO3_ST7 |
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Fusion gene information | Fusion gene name: TMCO3_ST7 | Fusion gene ID: 38312 | Hgene | Tgene | Gene symbol | TMCO3 | ST7 | Gene ID | 55002 | 29967 |
Gene name | transmembrane and coiled-coil domains 3 | LDL receptor related protein 12 | |
Synonyms | C13orf11 | ST7 | |
Cytomap | 13q34 | 8q22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | transmembrane and coiled-coil domain-containing protein 3putative LAG1-interacting protein | low-density lipoprotein receptor-related protein 12suppressor of tumorigenicity 7 protein | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q6UWJ1 | Q9NRC1 | |
Ensembl transtripts involved in fusion gene | ENST00000434316, ENST00000375391, ENST00000474393, | ENST00000393446, ENST00000265437, ENST00000393451, ENST00000393449, ENST00000323984, ENST00000432298, ENST00000422922, ENST00000487459, ENST00000393443, ENST00000393447, ENST00000393444, ENST00000465133, | |
Fusion gene scores | * DoF score | 8 X 6 X 5=240 | 8 X 6 X 5=240 |
# samples | 8 | 8 | |
** MAII score | log2(8/240*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/240*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TMCO3 [Title/Abstract] AND ST7 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ST7 | GO:0001764 | neuron migration | 26639854 |
Tgene | ST7 | GO:0031175 | neuron projection development | 26639854 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | LUAD | TCGA-55-8620-01A | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000434316 | ENST00000393446 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000434316 | ENST00000265437 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000434316 | ENST00000393451 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000434316 | ENST00000393449 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000434316 | ENST00000323984 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000434316 | ENST00000432298 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000434316 | ENST00000422922 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000434316 | ENST00000487459 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000434316 | ENST00000393443 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000434316 | ENST00000393447 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000434316 | ENST00000393444 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000434316 | ENST00000465133 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000375391 | ENST00000393446 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000375391 | ENST00000265437 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000375391 | ENST00000393451 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000375391 | ENST00000393449 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000375391 | ENST00000323984 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000375391 | ENST00000432298 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3CDS | ENST00000375391 | ENST00000422922 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000375391 | ENST00000487459 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000375391 | ENST00000393443 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000375391 | ENST00000393447 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000375391 | ENST00000393444 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
5UTR-3UTR | ENST00000375391 | ENST00000465133 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3CDS | ENST00000474393 | ENST00000393446 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3CDS | ENST00000474393 | ENST00000265437 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3CDS | ENST00000474393 | ENST00000393451 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3CDS | ENST00000474393 | ENST00000393449 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3CDS | ENST00000474393 | ENST00000323984 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3CDS | ENST00000474393 | ENST00000432298 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3CDS | ENST00000474393 | ENST00000422922 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3UTR | ENST00000474393 | ENST00000487459 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3UTR | ENST00000474393 | ENST00000393443 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3UTR | ENST00000474393 | ENST00000393447 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3UTR | ENST00000474393 | ENST00000393444 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
3UTR-3UTR | ENST00000474393 | ENST00000465133 | TMCO3 | chr13 | 114145588 | + | ST7 | chr7 | 116739816 | + |
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FusionProtFeatures for TMCO3_ST7 |
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Hgene | Tgene |
TMCO3 | ST7 |
Probable Na(+)/H(+) antiporter. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TMCO3_ST7 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TMCO3_ST7 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TMCO3 | EGFR, ELAVL1, HSPB1, GLP1R, TAP2, FNDC5, COG4, IFT57, HEMK1, SLC25A17, TYK2, PSME2, ATG9A, PXMP2, PIGQ, SQLE, GUF1, POTEF, CUL4B, ATP13A2, SREBF2, TUBB8, FADS1, TUBB3, DPH6, TUBA4A, ATP13A3, CUL4A, ADCK2, STX17, SLC26A6, DCAF8, SLC25A6, GGCX, AGPAT5, TMBIM6, DNAAF5, TMEM259, METTL13, TRIM25 | ST7 | NFKBIA, RIC3, KLRAP1, HLA-DQA1, MCOLN3, CD244, FAM189A2, PTGER3, CHRNA9, LRRTM2, EVC2, PTPRU, B4GAT1, CDH5, PCDHAC2, PCDHB11, PCDHB16, GPR21, CHRND, RNF19B, C3AR1, POLR2E, ZNRF4, HTR3A, FAM189B, LRRN1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TMCO3_ST7 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TMCO3_ST7 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |