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Fusion gene ID: 38111 |
FusionGeneSummary for TIMM8A_TRPC5 |
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Fusion gene information | Fusion gene name: TIMM8A_TRPC5 | Fusion gene ID: 38111 | Hgene | Tgene | Gene symbol | TIMM8A | TRPC5 | Gene ID | 1678 | 7224 |
Gene name | translocase of inner mitochondrial membrane 8A | transient receptor potential cation channel subfamily C member 5 | |
Synonyms | DDP|DDP1|DFN1|MTS|TIM8 | PPP1R159|TRP5 | |
Cytomap | Xq22.1 | Xq23 | |
Type of gene | protein-coding | protein-coding | |
Description | mitochondrial import inner membrane translocase subunit Tim8 AX-linked deafness dystonia proteindeafness dystonia protein 1deafness/dystonia peptidetranslocase of inner mitochondrial membrane 8 homolog A | short transient receptor potential channel 5TRP-5hTRP5protein phosphatase 1, regulatory subunit 159transient receptor potential channel 5transient receptor protein 5 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | O60220 | Q9UL62 | |
Ensembl transtripts involved in fusion gene | ENST00000372902, ENST00000480575, | ENST00000262839, | |
Fusion gene scores | * DoF score | 2 X 1 X 2=4 | 2 X 2 X 2=8 |
# samples | 2 | 2 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: TIMM8A [Title/Abstract] AND TRPC5 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | LUSC | TCGA-63-A5MI-01A | TIMM8A | chrX | 100603521 | - | TRPC5 | chrX | 111025366 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000372902 | ENST00000262839 | TIMM8A | chrX | 100603521 | - | TRPC5 | chrX | 111025366 | - |
5UTR-3CDS | ENST00000480575 | ENST00000262839 | TIMM8A | chrX | 100603521 | - | TRPC5 | chrX | 111025366 | - |
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FusionProtFeatures for TIMM8A_TRPC5 |
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Hgene | Tgene |
TIMM8A | TRPC5 |
Mitochondrial intermembrane chaperone that participatesin the import and insertion of some multi-pass transmembraneproteins into the mitochondrial inner membrane. Also required forthe transfer of beta-barrel precursors from the TOM complex to thesorting and assembly machinery (SAM complex) of the outermembrane. Acts as a chaperone-like protein that protects thehydrophobic precursors from aggregation and guide them through themitochondrial intermembrane space. The TIMM8-TIMM13 complexmediates the import of proteins such as TIMM23, SLC25A12/ARALAR1and SLC25A13/ARALAR2, while the predominant TIMM9-TIMM10 70 kDacomplex mediates the import of much more proteins. Probablynecessary for normal neurologic development.{ECO:0000269|PubMed:11489896, ECO:0000269|PubMed:15254020}. | Thought to form a receptor-activated non-selectivecalcium permeant cation channel. Probably is operated by aphosphatidylinositol second messenger system activated by receptortyrosine kinases or G-protein coupled receptors. Has also beenshown to be calcium-selective (By similarity). May also beactivated by intracellular calcium store depletion. {ECO:0000250,ECO:0000269|PubMed:16284075}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 971_973 | 632 | 974 | Region | Essential for binding to NHERF PDZ domain |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 141_170 | 632 | 974 | Repeat | Note=ANK 4 |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 31_60 | 632 | 974 | Repeat | Note=ANK 1 |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 69_97 | 632 | 974 | Repeat | Note=ANK 2 |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 98_124 | 632 | 974 | Repeat | Note=ANK 3 |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 1_330 | 632 | 974 | Topological domain | Cytoplasmic |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 352_398 | 632 | 974 | Topological domain | Extracellular |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 420_437 | 632 | 974 | Topological domain | Cytoplasmic |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 459_470 | 632 | 974 | Topological domain | Extracellular |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 492_512 | 632 | 974 | Topological domain | Cytoplasmic |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 534_603 | 632 | 974 | Topological domain | Extracellular |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 625_973 | 632 | 974 | Topological domain | Cytoplasmic |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 331_351 | 632 | 974 | Transmembrane | Helical |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 399_419 | 632 | 974 | Transmembrane | Helical |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 438_458 | 632 | 974 | Transmembrane | Helical |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 471_491 | 632 | 974 | Transmembrane | Helical |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 513_533 | 632 | 974 | Transmembrane | Helical |
Tgene | TRPC5 | chrX:100603521 | chrX:111025366 | ENST00000262839 | - | 6 | 11 | 604_624 | 632 | 974 | Transmembrane | Helical |
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FusionGeneSequence for TIMM8A_TRPC5 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_TIMM8A_ENST00000372902_chrX_100603521_-_TRPC5_ENST00000262839_chrX_111025366_-_386aa MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWDHADIEWKFARTKLWMSYFDEGGTLPPPFNIIPSPKSFLYLGNWFN NTFCPKRDPDGRRRRRNLRSFTERNADSLIQNQHYQEVIRNLVKRYVAAMIRNSKTHEGLTEENFKELKQDISSFRYEVLDLLGNRKHPR SFSTSSTELSQRDDNNDGSGGARAKSKSVSFNLGCKKKTCHGPPLIRTMPRSSGAQGKSKAESSSKRSFMGPSLKKLGLLFSKFNGHMSE PSSEPMYTISDGIVQQHCMWQDIRYSQMEKGKAEACSQSEINLSEVELGEVQGAAQSSECPLACSSSLHCASSICSSNSKLLDSSEDVFE |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_TIMM8A_ENST00000372902_chrX_100603521_-_TRPC5_ENST00000262839_chrX_111025366_-_1158nt ATGGATTCCTCCTCCTCTTCCTCCGCGGCGGGTTTGGGTGCAGTGGACCCGCAGTTGCAGCATTTCATCGAGGTAGAGACTCAAAAGCAG CGCTTCCAGCAGCTGGTGCACCAGATGACTGAACTTTGTTGGGATCATGCTGATATCGAGTGGAAGTTTGCAAGGACGAAGCTCTGGATG AGTTACTTTGATGAAGGTGGCACCTTGCCACCTCCTTTCAACATCATCCCCAGCCCCAAGTCATTTCTATACCTTGGTAACTGGTTCAAC AACACCTTCTGCCCCAAAAGAGACCCTGACGGTAGACGGAGAAGGCGCAACTTGAGAAGTTTCACAGAACGCAATGCTGACAGCCTGATA CAAAATCAACATTATCAGGAAGTTATCAGGAATTTAGTCAAAAGATATGTGGCTGCTATGATAAGAAATTCCAAAACACATGAGGGACTT ACAGAAGAAAATTTTAAGGAATTAAAGCAAGACATCTCCAGCTTTCGGTATGAAGTGCTTGACCTCTTGGGAAATAGAAAACATCCAAGG AGCTTTTCCACTAGCAGCACTGAACTGTCTCAGAGAGACGATAATAATGATGGCAGTGGTGGGGCTCGGGCCAAATCCAAGAGTGTCTCT TTTAATTTAGGCTGCAAGAAAAAGACTTGCCATGGGCCACCTCTCATCAGAACCATGCCAAGGTCCAGTGGTGCCCAAGGAAAGTCAAAA GCTGAGTCATCAAGCAAACGCTCCTTCATGGGTCCTTCTCTCAAGAAACTGGGTCTCCTATTCTCCAAATTTAATGGTCATATGTCTGAA CCCAGTTCAGAGCCAATGTACACAATTTCTGATGGAATTGTTCAGCAGCACTGTATGTGGCAGGACATCAGATATTCTCAGATGGAGAAA GGGAAAGCAGAGGCCTGTTCTCAAAGTGAAATTAACCTCAGTGAGGTAGAATTAGGTGAAGTCCAGGGCGCTGCTCAGAGCAGTGAATGC CCTCTAGCCTGTTCCAGCTCTCTTCACTGTGCATCCAGCATCTGCTCCTCAAATTCTAAACTTTTAGACTCCTCAGAGGATGTATTTGAA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_TIMM8A_ENST00000372902_chrX_100603521_-_TRPC5_ENST00000262839_chrX_111025366_-_3688nt TTCCCTACGTCGGGAGAGGAAAACTCCATCAAAAAACGAAAGCCAGGGGCCCAGGATAGCCAACTAATCGACCCAGTCAACTAACTGACC CAGTGCACAACTCTGGTAGCTCAGAAAACGCGGGCTAATTTGGAAGTGGACAGGGGCGGAGCTGTGGGGCCAGCACGGAATGGATCACGT GGTCTGAAGTAACTTCCTTTTCTCCTTTCTTTTCTTTTTGGAGTAACATCTCAACGGCACCTCGGCTCTGGGCTGTAAGCCCTGCGATCT CAAGGCGCAAGGCTGGGCGCAACGGCAGGGTTGCGGGGTTACGGGATTGCGGGGTCCGGGGAGTGGAACCCGCCGACTCCGGGAACGAAG CACCGGCGCCAAGGTGTGGGAGGCGGCGGGGTGGAGTTGGACGCCTGCCTCGCGCCGACGCAGTGCACTCACGGGGGCGGTCCCAGAGGC AGCTAGCTGTGGTTCCGGTTCCGTCGCGGAGACACGTGAAGGTCGGTGCGGAGTTCGTCTCTGCAAGCTTGGTCGCCCTGGGATGGATTC CTCCTCCTCTTCCTCCGCGGCGGGTTTGGGTGCAGTGGACCCGCAGTTGCAGCATTTCATCGAGGTAGAGACTCAAAAGCAGCGCTTCCA GCAGCTGGTGCACCAGATGACTGAACTTTGTTGGGATCATGCTGATATCGAGTGGAAGTTTGCAAGGACGAAGCTCTGGATGAGTTACTT TGATGAAGGTGGCACCTTGCCACCTCCTTTCAACATCATCCCCAGCCCCAAGTCATTTCTATACCTTGGTAACTGGTTCAACAACACCTT CTGCCCCAAAAGAGACCCTGACGGTAGACGGAGAAGGCGCAACTTGAGAAGTTTCACAGAACGCAATGCTGACAGCCTGATACAAAATCA ACATTATCAGGAAGTTATCAGGAATTTAGTCAAAAGATATGTGGCTGCTATGATAAGAAATTCCAAAACACATGAGGGACTTACAGAAGA AAATTTTAAGGAATTAAAGCAAGACATCTCCAGCTTTCGGTATGAAGTGCTTGACCTCTTGGGAAATAGAAAACATCCAAGGAGCTTTTC CACTAGCAGCACTGAACTGTCTCAGAGAGACGATAATAATGATGGCAGTGGTGGGGCTCGGGCCAAATCCAAGAGTGTCTCTTTTAATTT AGGCTGCAAGAAAAAGACTTGCCATGGGCCACCTCTCATCAGAACCATGCCAAGGTCCAGTGGTGCCCAAGGAAAGTCAAAAGCTGAGTC ATCAAGCAAACGCTCCTTCATGGGTCCTTCTCTCAAGAAACTGGGTCTCCTATTCTCCAAATTTAATGGTCATATGTCTGAACCCAGTTC AGAGCCAATGTACACAATTTCTGATGGAATTGTTCAGCAGCACTGTATGTGGCAGGACATCAGATATTCTCAGATGGAGAAAGGGAAAGC AGAGGCCTGTTCTCAAAGTGAAATTAACCTCAGTGAGGTAGAATTAGGTGAAGTCCAGGGCGCTGCTCAGAGCAGTGAATGCCCTCTAGC CTGTTCCAGCTCTCTTCACTGTGCATCCAGCATCTGCTCCTCAAATTCTAAACTTTTAGACTCCTCAGAGGATGTATTTGAAACTTGGGG AGAGGCTTGTGACTTGCTCATGCACAAATGGGGTGATGGACAGGAAGAACAAGTTACAACTCGCCTCTAAGTCAAGCCCTAATCATCTGT TCTGGAACTCAACAGAAATCTGTAATTTCCTTGCTCTCAGAGGTGACACAGAATATGATTCCCTCACTGCCCCTGCCCCCCAGAAAGGAG AGTGAAACTCTTATTTGCACCATCTTTTATAGCCACATTCTCCATTTTTGTTCTTGTTTTATTATTACTTTCATTATTATTTGCCTTTTT AATACCTATACACACTAAGTCCATCTTACAACCGACTGAAGGGGTGTTGCACCTAATCATCAGAGGTGCAGTTGGGTGCTTAACCTTTTT GCTTTGCTTTTCTCACCCATGCTTCCTTGAAGCCCCAGGTGCCACTTTGCTGGTCTTGTTGCCGCACAGATTCCTGACCATCCTCAGAAT CTCATGCCATTTTCCCGCAGAGCTGAGGGATGTGGTCAGCAGTCCCCACCAGCTATCAGATAAGGCAAACTACCCTGCCCATCTTTGTTG CCATTCAGTGCTACGCGCTGCCCATGCTGGGTCAATGAACAGCATCAAAGGGAGGCTGAAGAGATTTCAAAGAATTGTCAGCTTGTGGTT TCTGGGTATAAGTGGCTTGTTTCGTTCTTAAATACTACAACTTCTTATTGTGGGGGCTATTGAGTTTTCTTGTTTCTTAAAGATGTGTTA GTTTCCTAATGTGTGCCAATGAAATATTTACCCCATAGTATATGTCATATCTAATAAGTTAGGCGAATTATTTTTCTGTTTGTGTGTTTC AGTTAACTTACTACATTTGAAAATTTGATAGTATCAAAATTAGTATTTAGAATTTGTGCTATTTTTTAAAAACATCTACTACACTCTAAC CAATAGTCACTACATCTCATACATTGGCAAGATAAATAGTTGTCATATTTGTTGGGTCCTATTCTACTGTTGATAGTTTTAATTATCATT GCTATCAAATAATTTCTAAGATAAAAGCCTGAATTTGAAATATTTTTATCAGAAAAATGGCATATTGCTGAAGTGTCAAAATATGAGAAA AGAGCATCTTCATTTTAATTAACTGCTTTATAAAAATGGCAACTTTAGGTATAGATAACCTAATTCAGGTTGCAGTTTTAATATTCATTG GGGGCAGTGGAATTGCATGTGTAAATTATGTTAGATATATATCATAACAACCCTAGTGGATTCATGGAATTATAAACGTGATCCAAATTC TACTGTCTTCCAAGAAAGCTACATTTATACATCCAAACAAATTCTTTTCCACAGCTTAAGAGTACCTCATCAGAATACAGTGGTTCAAGT TAAAAAATAAAGTCCATAATGCATATGGTCATCATTCTAGACCTGATAACCACTGAGAACCTGCTGAGCAAGGACGGCTTTTACCAACAT TAGCACAAAGGTTTCCTCAGTTTAGACTCTAACATATGACCTGAAACAACTCTAGGTCTGAGTCCTAGAGATTACATAAATAGTGTGTAG CCCAGAAAAGTAAAATAGGTGTCACGCTGTTTTTTTTAATGTCAACACCAATAGGAATCCATTTAGATTAATGTATGTAATTTCTGATAA AAGTAAGAGAAATGAGGAACTTTCGAACTGCAAATATGCCTCCAAACTAGCTTTTGATAAGTGTGGTTTCTGTTATTTGAATGGATTCCC ATCTTTGTCTCTAGCCTGGAGAAGAGCAAAATGGAGGGGGAGGGGCCAGAAATAGGAGGAGGTTTTGAAGAATAAAGCCTCATATCCAGG AAAAAGTGATCAAGTGAAAAAGCTGCATCAAGACCCATTTGGCAAGAGGTTGTCCGAAAATAATTCCTTGATCATATCTGAAGTGGTTAT TTACTCAAATCAATTTCTCCCCTGCTTCGCTAAGACTGTCATAAAATGGCCTTGACATTTAATCACAGGTTACTTTCCAGAAAGGTTTCT |
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FusionGenePPI for TIMM8A_TRPC5 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TIMM8A | STAM, TIMM13, JOSD1, USP30, UBE2L6, KRT15, STAM2, TIMM10, CDA, TIMM9, TIMMDC1, XRCC3, CDT1, YBEY | TRPC5 | HOMER1, HOMER3, ITPR1, STMN3, STMN1, STMN2, STMN4, TRPC6, TRPC3, TRPC1, TRPC4, ITPR3, TERF1, TERF2, TRPC4AP, TNFRSF1A, TAF9, SEC24B |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TIMM8A_TRPC5 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TIMM8A_TRPC5 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TIMM8A | C0796074 | MOHR-TRANEBJAERG SYNDROME | 2 | CTD_human;ORPHANET;UNIPROT |
Hgene | TIMM8A | C1839564 | Jensen syndrome | 1 | CTD_human |
Tgene | TRPC5 | C0020538 | Hypertensive disease | 1 | CTD_human |