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Fusion gene ID: 38078 |
FusionGeneSummary for TIAM1_PCBP3 |
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Fusion gene information | Fusion gene name: TIAM1_PCBP3 | Fusion gene ID: 38078 | Hgene | Tgene | Gene symbol | TIAM1 | PCBP3 | Gene ID | 7074 | 54039 |
Gene name | T cell lymphoma invasion and metastasis 1 | poly(rC) binding protein 3 | |
Synonyms | TIAM-1 | ALPHA-CP3|PCBP3-OT1|PCBP3OT | |
Cytomap | 21q22.11 | 21q22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | T-lymphoma invasion and metastasis-inducing protein 1human T-lymphoma invasion and metastasis inducing TIAM1 protein | poly(rC)-binding protein 3PCBP3 overlapping transcript 1PCBP3-overlapping transcriptpoly(rC) binding protein 3 overlapping transcript | |
Modification date | 20180522 | 20180519 | |
UniProtAcc | Q13009 | P57721 | |
Ensembl transtripts involved in fusion gene | ENST00000286827, ENST00000541036, ENST00000469412, | ENST00000400314, ENST00000400310, ENST00000449640, ENST00000400309, ENST00000400308, ENST00000400304, ENST00000423045, | |
Fusion gene scores | * DoF score | 8 X 5 X 5=200 | 4 X 4 X 4=64 |
# samples | 9 | 4 | |
** MAII score | log2(9/200*10)=-1.15200309344505 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/64*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TIAM1 [Title/Abstract] AND PCBP3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TIAM1 | GO:0008284 | positive regulation of cell proliferation | 25032858 |
Hgene | TIAM1 | GO:0010717 | regulation of epithelial to mesenchymal transition | 20826792 |
Hgene | TIAM1 | GO:0030335 | positive regulation of cell migration | 25032858 |
Hgene | TIAM1 | GO:0032092 | positive regulation of protein binding | 23109420 |
Hgene | TIAM1 | GO:0090630 | activation of GTPase activity | 23109420 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | HNSC | TCGA-CR-7367-01A | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000286827 | ENST00000400314 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000286827 | ENST00000400310 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000286827 | ENST00000449640 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000286827 | ENST00000400309 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000286827 | ENST00000400308 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-intron | ENST00000286827 | ENST00000400304 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-intron | ENST00000286827 | ENST00000423045 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
intron-3CDS | ENST00000541036 | ENST00000400314 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
intron-3CDS | ENST00000541036 | ENST00000400310 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
intron-3CDS | ENST00000541036 | ENST00000449640 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
intron-3CDS | ENST00000541036 | ENST00000400309 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
intron-3CDS | ENST00000541036 | ENST00000400308 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
intron-intron | ENST00000541036 | ENST00000400304 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
intron-intron | ENST00000541036 | ENST00000423045 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000469412 | ENST00000400314 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000469412 | ENST00000400310 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000469412 | ENST00000449640 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000469412 | ENST00000400309 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-3CDS | ENST00000469412 | ENST00000400308 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-intron | ENST00000469412 | ENST00000400304 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
5UTR-intron | ENST00000469412 | ENST00000423045 | TIAM1 | chr21 | 32711558 | - | PCBP3 | chr21 | 47316122 | + |
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FusionProtFeatures for TIAM1_PCBP3 |
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Hgene | Tgene |
TIAM1 | PCBP3 |
Modulates the activity of RHO-like proteins and connectsextracellular signals to cytoskeletal activities. Acts as a GDP-dissociation stimulator protein that stimulates the GDP-GTPexchange activity of RHO-like GTPases and activates them.Activates RAC1, CDC42, and to a lesser extent RHOA. Required fornormal cell adhesion and cell migration.{ECO:0000269|PubMed:20361982}. | Single-stranded nucleic acid binding protein that bindspreferentially to oligo dC. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TIAM1_PCBP3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TIAM1_PCBP3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TIAM1 | PPP1R9B, MAPK8IP2, MAPK8IP1, RAC1, HRAS, MYC, CD44, PRKCA, PRKCB, PRKCG, PRKCE, PRKCD, PRKCZ, ANK1, ANK3, NME1, YWHAG, WHSC1, UBC, ALB, YWHAE, CFTR, BTRC, CSNK1A1, CSNK1E, FBXW11, DARS, KBTBD6, KBTBD7, CTDSPL, KCTD3, KIF13B, ZBTB21, KSR1, GIGYF1, LRFN1, DENND1A, SH3PXD2A, SRGAP2, EIF4E2, SIPA1L1, CGN, RTKN, MAST3, LIMA1, MAGI1, PPM1H, TESK2, DCLK1, ZNF638, DENND4C, SRSF12, SYDE1, AGAP1, CDC25B, CDK16, HDAC4, MAPKAP1, NF1, FAM110B, USP21, CBY1, ANKRD34A, FAM53C, NADK, CDC25C, FAM110A, CAMSAP2, KIAA1804, RASAL2, GIGYF2, PHLDB2, PLEKHA7, KIF1C, INPP5E | PCBP3 | RUVBL1, RUVBL2, RBM39, PTBP1, PTBP2, SPEN, PFKL, FAM96B, FTH1, PCBP1, RHOD, KCTD17, AKR1B10, TSTA3, PDCD2L, DLD, PPP1R18, DCP2, BBOX1, PCM1, CEP128, CDC73, HDAC10, WNT16, TYW3, COLGALT2, CCDC6, GBP2, METTL25, DVL3, OCRL |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TIAM1_PCBP3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TIAM1_PCBP3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TIAM1 | C1862939 | AMYOTROPHIC LATERAL SCLEROSIS 1 | 1 | CTD_human |