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Fusion gene ID: 38074 |
FusionGeneSummary for TIAM1_HELZ |
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Fusion gene information | Fusion gene name: TIAM1_HELZ | Fusion gene ID: 38074 | Hgene | Tgene | Gene symbol | TIAM1 | HELZ | Gene ID | 7074 | 9931 |
Gene name | T cell lymphoma invasion and metastasis 1 | helicase with zinc finger | |
Synonyms | TIAM-1 | DHRC|DRHC|HUMORF5 | |
Cytomap | 21q22.11 | 17q24.2 | |
Type of gene | protein-coding | protein-coding | |
Description | T-lymphoma invasion and metastasis-inducing protein 1human T-lymphoma invasion and metastasis inducing TIAM1 protein | probable helicase with zinc finger domaindown-regulated in human cancers proteinhelicase with zinc finger domain | |
Modification date | 20180522 | 20180526 | |
UniProtAcc | Q13009 | P42694 | |
Ensembl transtripts involved in fusion gene | ENST00000286827, ENST00000541036, ENST00000469412, | ENST00000358691, ENST00000580168, ENST00000580662, | |
Fusion gene scores | * DoF score | 8 X 5 X 5=200 | 6 X 5 X 3=90 |
# samples | 9 | 5 | |
** MAII score | log2(9/200*10)=-1.15200309344505 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/90*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: TIAM1 [Title/Abstract] AND HELZ [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TIAM1 | GO:0008284 | positive regulation of cell proliferation | 25032858 |
Hgene | TIAM1 | GO:0010717 | regulation of epithelial to mesenchymal transition | 20826792 |
Hgene | TIAM1 | GO:0030335 | positive regulation of cell migration | 25032858 |
Hgene | TIAM1 | GO:0032092 | positive regulation of protein binding | 23109420 |
Hgene | TIAM1 | GO:0090630 | activation of GTPase activity | 23109420 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | L44394 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000286827 | ENST00000358691 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
intron-intron | ENST00000286827 | ENST00000580168 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
intron-intron | ENST00000286827 | ENST00000580662 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
intron-intron | ENST00000541036 | ENST00000358691 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
intron-intron | ENST00000541036 | ENST00000580168 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
intron-intron | ENST00000541036 | ENST00000580662 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
intron-intron | ENST00000469412 | ENST00000358691 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
intron-intron | ENST00000469412 | ENST00000580168 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
intron-intron | ENST00000469412 | ENST00000580662 | TIAM1 | chr21 | 32850277 | + | HELZ | chr17 | 65080033 | + |
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FusionProtFeatures for TIAM1_HELZ |
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Hgene | Tgene |
TIAM1 | HELZ |
Modulates the activity of RHO-like proteins and connectsextracellular signals to cytoskeletal activities. Acts as a GDP-dissociation stimulator protein that stimulates the GDP-GTPexchange activity of RHO-like GTPases and activates them.Activates RAC1, CDC42, and to a lesser extent RHOA. Required fornormal cell adhesion and cell migration.{ECO:0000269|PubMed:20361982}. | May act as a helicase that plays a role in RNAmetabolism in multiple tissues and organs within the developingembryo. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TIAM1_HELZ |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TIAM1_HELZ |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TIAM1_HELZ |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TIAM1_HELZ |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TIAM1 | C1862939 | AMYOTROPHIC LATERAL SCLEROSIS 1 | 1 | CTD_human |