|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 38059 |
FusionGeneSummary for THUMPD2_VSNL1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: THUMPD2_VSNL1 | Fusion gene ID: 38059 | Hgene | Tgene | Gene symbol | THUMPD2 | VSNL1 | Gene ID | 80745 | 7447 |
| Gene name | THUMP domain containing 2 | visinin like 1 | |
| Synonyms | C2orf8 | HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 | |
| Cytomap | 2p22.1|2p22-p21 | 2p24.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | THUMP domain-containing protein 2SAM-dependent methyltransferase | visinin-like protein 1VLP-1hippocalcin-like protein 3 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q9BTF0 | P62760 | |
| Ensembl transtripts involved in fusion gene | ENST00000505747, ENST00000260619, ENST00000454352, ENST00000403537, | ENST00000404666, ENST00000295156, ENST00000406397, ENST00000483921, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 3 X 4 X 3=36 |
| # samples | 2 | 4 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: THUMPD2 [Title/Abstract] AND VSNL1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-55-A4DG-01A | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000505747 | ENST00000404666 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| In-frame | ENST00000505747 | ENST00000295156 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| In-frame | ENST00000505747 | ENST00000406397 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| 5CDS-intron | ENST00000505747 | ENST00000483921 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| In-frame | ENST00000260619 | ENST00000404666 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| In-frame | ENST00000260619 | ENST00000295156 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| In-frame | ENST00000260619 | ENST00000406397 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| 5CDS-intron | ENST00000260619 | ENST00000483921 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| In-frame | ENST00000454352 | ENST00000404666 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| In-frame | ENST00000454352 | ENST00000295156 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| In-frame | ENST00000454352 | ENST00000406397 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| 5CDS-intron | ENST00000454352 | ENST00000483921 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| 5UTR-3CDS | ENST00000403537 | ENST00000404666 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| 5UTR-3CDS | ENST00000403537 | ENST00000295156 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| 5UTR-3CDS | ENST00000403537 | ENST00000406397 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
| 5UTR-intron | ENST00000403537 | ENST00000483921 | THUMPD2 | chr2 | 40006254 | - | VSNL1 | chr2 | 17830677 | + |
Top |
FusionProtFeatures for THUMPD2_VSNL1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| THUMPD2 | VSNL1 |
| Regulates (in vitro) the inhibition of rhodopsinphosphorylation in a calcium-dependent manner. {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000295156 | + | 1 | 4 | 109_120 | 54 | 192 | Calcium binding | 2 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000295156 | + | 1 | 4 | 159_170 | 54 | 192 | Calcium binding | 3 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000295156 | + | 1 | 4 | 73_84 | 54 | 192 | Calcium binding | 1 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000404666 | + | 1 | 4 | 109_120 | 54 | 192 | Calcium binding | 2 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000404666 | + | 1 | 4 | 159_170 | 54 | 192 | Calcium binding | 3 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000404666 | + | 1 | 4 | 73_84 | 54 | 192 | Calcium binding | 1 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000406397 | + | 1 | 4 | 109_120 | 54 | 192 | Calcium binding | 2 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000406397 | + | 1 | 4 | 159_170 | 54 | 192 | Calcium binding | 3 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000406397 | + | 1 | 4 | 73_84 | 54 | 192 | Calcium binding | 1 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000295156 | + | 1 | 4 | 146_181 | 54 | 192 | Domain | EF-hand 4 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000295156 | + | 1 | 4 | 60_95 | 54 | 192 | Domain | EF-hand 2 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000295156 | + | 1 | 4 | 96_131 | 54 | 192 | Domain | EF-hand 3 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000404666 | + | 1 | 4 | 146_181 | 54 | 192 | Domain | EF-hand 4 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000404666 | + | 1 | 4 | 60_95 | 54 | 192 | Domain | EF-hand 2 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000404666 | + | 1 | 4 | 96_131 | 54 | 192 | Domain | EF-hand 3 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000406397 | + | 1 | 4 | 146_181 | 54 | 192 | Domain | EF-hand 4 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000406397 | + | 1 | 4 | 60_95 | 54 | 192 | Domain | EF-hand 2 |
| Tgene | >VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000406397 | + | 1 | 4 | 96_131 | 54 | 192 | Domain | EF-hand 3 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >THUMPD2 | chr2:40006254 | chr2:17830677 | ENST00000260619 | - | 1 | 10 | 161_266 | 12 | 474 | Domain | THUMP |
| Hgene | >THUMPD2 | chr2:40006254 | chr2:17830677 | ENST00000505747 | - | 1 | 10 | 161_266 | 42 | 504 | Domain | THUMP |
| Tgene | VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000295156 | + | 1 | 4 | 23_58 | 54 | 192 | Domain | EF-hand 1 |
| Tgene | VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000404666 | + | 1 | 4 | 23_58 | 54 | 192 | Domain | EF-hand 1 |
| Tgene | VSNL1 | chr2:40006254 | chr2:17830677 | ENST00000406397 | + | 1 | 4 | 23_58 | 54 | 192 | Domain | EF-hand 1 |
Top |
FusionGeneSequence for THUMPD2_VSNL1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_180aa MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLN WAFNMYDLDGDGKITRVEMLEIIEAIYKMVGTVIMMKMNEDGLTPEQRVDKIFSKMDKNKDDQITLDEFKEAAKSDPSIVLLLQCDIQKX >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_180aa MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLN WAFNMYDLDGDGKITRVEMLEIIEAIYKMVGTVIMMKMNEDGLTPEQRVDKIFSKMDKNKDDQITLDEFKEAAKSDPSIVLLLQCDIQKX >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_180aa MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLN WAFNMYDLDGDGKITRVEMLEIIEAIYKMVGTVIMMKMNEDGLTPEQRVDKIFSKMDKNKDDQITLDEFKEAAKSDPSIVLLLQCDIQKX >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_150aa MREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMV >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_150aa MREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMV >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_150aa MREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMV >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_150aa MREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMV >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_150aa MREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMV >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_150aa MREVRARLAATQFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMV |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_540nt ATGTCGGAGGCGCGTGGAGAGCCAGGGTCCGGGCCTGAGGCTGGCGCCCGATTCTTCTGCACTGCGGGTCGCGGCCTGGAGCCGTTCGTA ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_540nt ATGTCGGAGGCGCGTGGAGAGCCAGGGTCCGGGCCTGAGGCTGGCGCCCGATTCTTCTGCACTGCGGGTCGCGGCCTGGAGCCGTTCGTA ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_540nt ATGTCGGAGGCGCGTGGAGAGCCAGGGTCCGGGCCTGAGGCTGGCGCCCGATTCTTCTGCACTGCGGGTCGCGGCCTGGAGCCGTTCGTA ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_450nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_450nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_450nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_450nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_450nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_450nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_1252nt GAAGGCGCGAGGGCGCGCCTGAGCCGCCATGTCGGAGGCGCGTGGAGAGCCAGGGTCCGGGCCTGAGGCTGGCGCCCGATTCTTCTGCAC TGCGGGTCGCGGCCTGGAGCCGTTCGTAATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAA GTTTGCCCAGCATGCCTTCCGAACCTTCGACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTC CAGGGGCAGCTTTGAGCAGAAGCTGAACTGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGA GATCATCGAGGCTATCTACAAAATGGTAGGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAA GATTTTCAGCAAGATGGATAAGAACAAAGATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATT ACTTCTGCAGTGCGACATCCAGAAATGAGCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTC ACACACACACACACACACACACACACACACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTG AAACACTCGTGTGCATGAGAATGTCATTTGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGT GTAATATCATTTCATAAAAATCCCTCTTCCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGC TAATGCTCGTATCTCCTTGATTACATAATGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTC CTGTAAAATACTATTGGACAGACACAGAGGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATA AATGTACTACATTTGCATGCCTTTTGGGTTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAAT >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_1613nt GAAGGCGCGAGGGCGCGCCTGAGCCGCCATGTCGGAGGCGCGTGGAGAGCCAGGGTCCGGGCCTGAGGCTGGCGCCCGATTCTTCTGCAC TGCGGGTCGCGGCCTGGAGCCGTTCGTAATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAA GTTTGCCCAGCATGCCTTCCGAACCTTCGACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTC CAGGGGCAGCTTTGAGCAGAAGCTGAACTGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGA GATCATCGAGGCTATCTACAAAATGGTAGGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAA GATTTTCAGCAAGATGGATAAGAACAAAGATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATT ACTTCTGCAGTGCGACATCCAGAAATGAGCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTC ACACACACACACACACACACACACACACACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTG AAACACTCGTGTGCATGAGAATGTCATTTGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGT GTAATATCATTTCATAAAAATCCCTCTTCCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGC TAATGCTCGTATCTCCTTGATTACATAATGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTC CTGTAAAATACTATTGGACAGACACAGAGGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATA AATGTACTACATTTGCATGCCTTTTGGGTTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAAT GCAGTATAAAATGTAAAAACCCTGCTAAATGACTTATTGATTAAGTATATCTATCTATATATACATATACACAAAGATATTATTTATCGA AAGTAAAAAAGATGGAAGTGTATTGGTTTCTGTTTGAATTTTCAAAGGCTTCCAATGTGGTGGCAATAAATGTCCCAAATAAATTTATAA CAATTGATTTTCCCCCTAATTCTTATTTTATAATTTTAAAATTGCAGCAGTTGCTAGCAACAACTTACTAAATCTACTCTTAAATATACA ACTTTGGAATTTGAAGAATTAATGACAACAAAAGGGAAAAAAGCAACTTTCCAACTTTTCATCCAGGCTCCCAAAAGAGGGACAACGAAC >In-frame_THUMPD2_ENST00000505747_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_2192nt GAAGGCGCGAGGGCGCGCCTGAGCCGCCATGTCGGAGGCGCGTGGAGAGCCAGGGTCCGGGCCTGAGGCTGGCGCCCGATTCTTCTGCAC TGCGGGTCGCGGCCTGGAGCCGTTCGTAATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAA GTTTGCCCAGCATGCCTTCCGAACCTTCGACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTC CAGGGGCAGCTTTGAGCAGAAGCTGAACTGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGA GATCATCGAGGCTATCTACAAAATGGTAGGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAA GATTTTCAGCAAGATGGATAAGAACAAAGATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATT ACTTCTGCAGTGCGACATCCAGAAATGAGCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTC ACACACACACACACACACACACACACACACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTG AAACACTCGTGTGCATGAGAATGTCATTTGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGT GTAATATCATTTCATAAAAATCCCTCTTCCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGC TAATGCTCGTATCTCCTTGATTACATAATGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTC CTGTAAAATACTATTGGACAGACACAGAGGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATA AATGTACTACATTTGCATGCCTTTTGGGTTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAAT GCAGTATAAAATGTAAAAACCCTGCTAAATGACTTATTGATTAAGTATATCTATCTATATATACATATACACAAAGATATTATTTATCGA AAGTAAAAAAGATGGAAGTGTATTGGTTTCTGTTTGAATTTTCAAAGGCTTCCAATGTGGTGGCAATAAATGTCCCAAATAAATTTATAA CAATTGATTTTCCCCCTAATTCTTATTTTATAATTTTAAAATTGCAGCAGTTGCTAGCAACAACTTACTAAATCTACTCTTAAATATACA ACTTTGGAATTTGAAGAATTAATGACAACAAAAGGGAAAAAAGCAACTTTCCAACTTTTCATCCAGGCTCCCAAAAGAGGGACAACGAAC ATGGCATGTGAAAAGTAAAACAGATTTGTTCATTCCGAAAAAAAAATGTTCATTCTATGACAATAAATTTTATCTCAGTGTGACTTTGGT GCTAACAACGTATGTTCAGTGCAACTACGTGGAGCTGTGCACACACAGCAGGTAGGCTGCAGGTGTCCCCCAACATAAGTCAGTAGGAAA GAAGACATCTGTCTTCCCAAATCTAAAGTAGGCAAAAAATAACAGAAGTAGCTATTTTTAATAACAGAACAGAACTCTGACTCTTTTGAT CTTGAAGGAGGCAGAAGAGATTCCATCAAAACCTCTAAAAGCAGGTTTGCATTTTCAGAACATGCCCCCCTAGAGAGTTGAGTTTTTTAC ACAGCACTACCCGGTAGTACTTTCTCTGATGATGGGAAGGTCTACATCTGCACAGCACGCTAGCTATAACTGCACATATGGCTACTGAGC ACTTCAAGTATGGCTAGCGTGACTAAGGAACTGAATTTTATACTGTAATTAAGTGTAATTTGCCACATATAGCTAGTGGCTTTAGTAACA GACAGTTTAGTGCTATATTATTTATTCAAGTACTTTTTATCAAATTCGTTTTTTACCGAATTCGTTTTTTACCATTCTTTATTTGTCTTA >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_1134nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA GCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTCACACACACACACACACACACACACACAC ACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTGAAACACTCGTGTGCATGAGAATGTCATT TGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGTGTAATATCATTTCATAAAAATCCCTCTT CCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGCTAATGCTCGTATCTCCTTGATTACATAA TGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTCCTGTAAAATACTATTGGACAGACACAGA GGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATAAATGTACTACATTTGCATGCCTTTTGGG TTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAATGCAGTATAAAATGTAAAAACCCTGCTAA >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_1495nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA GCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTCACACACACACACACACACACACACACAC ACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTGAAACACTCGTGTGCATGAGAATGTCATT TGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGTGTAATATCATTTCATAAAAATCCCTCTT CCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGCTAATGCTCGTATCTCCTTGATTACATAA TGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTCCTGTAAAATACTATTGGACAGACACAGA GGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATAAATGTACTACATTTGCATGCCTTTTGGG TTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAATGCAGTATAAAATGTAAAAACCCTGCTAA ATGACTTATTGATTAAGTATATCTATCTATATATACATATACACAAAGATATTATTTATCGAAAGTAAAAAAGATGGAAGTGTATTGGTT TCTGTTTGAATTTTCAAAGGCTTCCAATGTGGTGGCAATAAATGTCCCAAATAAATTTATAACAATTGATTTTCCCCCTAATTCTTATTT TATAATTTTAAAATTGCAGCAGTTGCTAGCAACAACTTACTAAATCTACTCTTAAATATACAACTTTGGAATTTGAAGAATTAATGACAA CAAAAGGGAAAAAAGCAACTTTCCAACTTTTCATCCAGGCTCCCAAAAGAGGGACAACGAACATGGCATGTGAAAAGTAAAACAGATTTG >In-frame_THUMPD2_ENST00000260619_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_2074nt ATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACCTTC GACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTGAAC TGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTA GGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAA GATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAATGA GCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTCACACACACACACACACACACACACACAC ACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTGAAACACTCGTGTGCATGAGAATGTCATT TGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGTGTAATATCATTTCATAAAAATCCCTCTT CCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGCTAATGCTCGTATCTCCTTGATTACATAA TGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTCCTGTAAAATACTATTGGACAGACACAGA GGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATAAATGTACTACATTTGCATGCCTTTTGGG TTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAATGCAGTATAAAATGTAAAAACCCTGCTAA ATGACTTATTGATTAAGTATATCTATCTATATATACATATACACAAAGATATTATTTATCGAAAGTAAAAAAGATGGAAGTGTATTGGTT TCTGTTTGAATTTTCAAAGGCTTCCAATGTGGTGGCAATAAATGTCCCAAATAAATTTATAACAATTGATTTTCCCCCTAATTCTTATTT TATAATTTTAAAATTGCAGCAGTTGCTAGCAACAACTTACTAAATCTACTCTTAAATATACAACTTTGGAATTTGAAGAATTAATGACAA CAAAAGGGAAAAAAGCAACTTTCCAACTTTTCATCCAGGCTCCCAAAAGAGGGACAACGAACATGGCATGTGAAAAGTAAAACAGATTTG TTCATTCCGAAAAAAAAATGTTCATTCTATGACAATAAATTTTATCTCAGTGTGACTTTGGTGCTAACAACGTATGTTCAGTGCAACTAC GTGGAGCTGTGCACACACAGCAGGTAGGCTGCAGGTGTCCCCCAACATAAGTCAGTAGGAAAGAAGACATCTGTCTTCCCAAATCTAAAG TAGGCAAAAAATAACAGAAGTAGCTATTTTTAATAACAGAACAGAACTCTGACTCTTTTGATCTTGAAGGAGGCAGAAGAGATTCCATCA AAACCTCTAAAAGCAGGTTTGCATTTTCAGAACATGCCCCCCTAGAGAGTTGAGTTTTTTACACAGCACTACCCGGTAGTACTTTCTCTG ATGATGGGAAGGTCTACATCTGCACAGCACGCTAGCTATAACTGCACATATGGCTACTGAGCACTTCAAGTATGGCTAGCGTGACTAAGG AACTGAATTTTATACTGTAATTAAGTGTAATTTGCCACATATAGCTAGTGGCTTTAGTAACAGACAGTTTAGTGCTATATTATTTATTCA AGTACTTTTTATCAAATTCGTTTTTTACCGAATTCGTTTTTTACCATTCTTTATTTGTCTTAGGATCATTACATAACACTAAACTAGGGT >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000404666_chr2_17830677_+_1137nt GTAATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACC TTCGACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTG AACTGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATG GTAGGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAAC AAAGATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAA TGAGCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTCACACACACACACACACACACACACA CACACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTGAAACACTCGTGTGCATGAGAATGTC ATTTGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGTGTAATATCATTTCATAAAAATCCCT CTTCCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGCTAATGCTCGTATCTCCTTGATTACA TAATGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTCCTGTAAAATACTATTGGACAGACAC AGAGGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATAAATGTACTACATTTGCATGCCTTTT GGGTTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAATGCAGTATAAAATGTAAAAACCCTGC >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000295156_chr2_17830677_+_1498nt GTAATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACC TTCGACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTG AACTGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATG GTAGGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAAC AAAGATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAA TGAGCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTCACACACACACACACACACACACACA CACACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTGAAACACTCGTGTGCATGAGAATGTC ATTTGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGTGTAATATCATTTCATAAAAATCCCT CTTCCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGCTAATGCTCGTATCTCCTTGATTACA TAATGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTCCTGTAAAATACTATTGGACAGACAC AGAGGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATAAATGTACTACATTTGCATGCCTTTT GGGTTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAATGCAGTATAAAATGTAAAAACCCTGC TAAATGACTTATTGATTAAGTATATCTATCTATATATACATATACACAAAGATATTATTTATCGAAAGTAAAAAAGATGGAAGTGTATTG GTTTCTGTTTGAATTTTCAAAGGCTTCCAATGTGGTGGCAATAAATGTCCCAAATAAATTTATAACAATTGATTTTCCCCCTAATTCTTA TTTTATAATTTTAAAATTGCAGCAGTTGCTAGCAACAACTTACTAAATCTACTCTTAAATATACAACTTTGGAATTTGAAGAATTAATGA CAACAAAAGGGAAAAAAGCAACTTTCCAACTTTTCATCCAGGCTCCCAAAAGAGGGACAACGAACATGGCATGTGAAAAGTAAAACAGAT >In-frame_THUMPD2_ENST00000454352_chr2_40006254_-_VSNL1_ENST00000406397_chr2_17830677_+_2077nt GTAATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGAACC TTCGACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCAGGGGCAGCTTTGAGCAGAAGCTG AACTGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCACCCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATG GTAGGCACTGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAAC AAAGATGACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTGCGACATCCAGAAA TGAGCTGATGTCAATGCTATGGACTGCACAAAAGTCTCAATGTTCCATTCAGTCTGCAGCTATTCACACACACACACACACACACACACA CACACACACACACACACACAAATATTGCTTGGACTACCTATAAATGGACTTGCTTCTTGTGTTTGAAACACTCGTGTGCATGAGAATGTC ATTTGCTAATGAATTTTAAAAGCATATATAAAACAAAACAAACAACCTGCCACAATGTGATATGTGTAATATCATTTCATAAAAATCCCT CTTCCTCCAAAGCCTGGGCAGAAATGTGCTGCAAAGAGTTATATGACTTCTTGTTCATGTTTTGCTAATGCTCGTATCTCCTTGATTACA TAATGTTAGTAGCACTGAGACCCCCATGGTAATGTAACTTAATTATAAGCTATGTCACTACCCTCCTGTAAAATACTATTGGACAGACAC AGAGGGACCCTTGGCTCCTGTGTCTGGTCCACACACCACAGAAGCTTGTATTATCAGTGAATATAAATGTACTACATTTGCATGCCTTTT GGGTTTGCCTTAATTCTTACCTCATTTGCATCCTATCGATCTGGAAAGAGCTGTTTTGGATGAATGCAGTATAAAATGTAAAAACCCTGC TAAATGACTTATTGATTAAGTATATCTATCTATATATACATATACACAAAGATATTATTTATCGAAAGTAAAAAAGATGGAAGTGTATTG GTTTCTGTTTGAATTTTCAAAGGCTTCCAATGTGGTGGCAATAAATGTCCCAAATAAATTTATAACAATTGATTTTCCCCCTAATTCTTA TTTTATAATTTTAAAATTGCAGCAGTTGCTAGCAACAACTTACTAAATCTACTCTTAAATATACAACTTTGGAATTTGAAGAATTAATGA CAACAAAAGGGAAAAAAGCAACTTTCCAACTTTTCATCCAGGCTCCCAAAAGAGGGACAACGAACATGGCATGTGAAAAGTAAAACAGAT TTGTTCATTCCGAAAAAAAAATGTTCATTCTATGACAATAAATTTTATCTCAGTGTGACTTTGGTGCTAACAACGTATGTTCAGTGCAAC TACGTGGAGCTGTGCACACACAGCAGGTAGGCTGCAGGTGTCCCCCAACATAAGTCAGTAGGAAAGAAGACATCTGTCTTCCCAAATCTA AAGTAGGCAAAAAATAACAGAAGTAGCTATTTTTAATAACAGAACAGAACTCTGACTCTTTTGATCTTGAAGGAGGCAGAAGAGATTCCA TCAAAACCTCTAAAAGCAGGTTTGCATTTTCAGAACATGCCCCCCTAGAGAGTTGAGTTTTTTACACAGCACTACCCGGTAGTACTTTCT CTGATGATGGGAAGGTCTACATCTGCACAGCACGCTAGCTATAACTGCACATATGGCTACTGAGCACTTCAAGTATGGCTAGCGTGACTA AGGAACTGAATTTTATACTGTAATTAAGTGTAATTTGCCACATATAGCTAGTGGCTTTAGTAACAGACAGTTTAGTGCTATATTATTTAT TCAAGTACTTTTTATCAAATTCGTTTTTTACCGAATTCGTTTTTTACCATTCTTTATTTGTCTTAGGATCATTACATAACACTAAACTAG |
Top |
FusionGenePPI for THUMPD2_VSNL1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| THUMPD2 | TPX2, SNX8, TRMT1, HSPB2, SPDL1, LACRT | VSNL1 | DTX2, FAM131C, ATXN1, GFI1B, ARMC1, HAX1, NUFIP1, CDCA8, DGUOK, DNAAF2 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for THUMPD2_VSNL1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for THUMPD2_VSNL1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | VSNL1 | C0036341 | Schizophrenia | 2 | PSYGENET |
| Tgene | VSNL1 | C0002395 | Alzheimer's Disease | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|