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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 37629

FusionGeneSummary for TCOF1_DSP

check button Fusion gene summary
Fusion gene informationFusion gene name: TCOF1_DSP
Fusion gene ID: 37629
HgeneTgene
Gene symbol

TCOF1

DSP

Gene ID

6949

1832

Gene nametreacle ribosome biogenesis factor 1desmoplakin
SynonymsMFD1|TCS|TCS1|treacleDCWHKTA|DP
Cytomap

5q32-q33.1

6p24.3

Type of geneprotein-codingprotein-coding
Descriptiontreacle proteinTreacher Collins syndrome proteinTreacher Collins-Franceschetti syndrome 1nucleolar trafficking phosphoproteindesmoplakin250/210 kDa paraneoplastic pemphigus antigen
Modification date2018052220180523
UniProtAcc

Q13428

P15924

Ensembl transtripts involved in fusion geneENST00000451292, ENST00000377797, 
ENST00000445265, ENST00000323668, 
ENST00000439160, ENST00000394269, 
ENST00000504761, ENST00000513346, 
ENST00000506063, 
ENST00000379802, 
ENST00000418664, 
Fusion gene scores* DoF score4 X 4 X 2=3217 X 15 X 8=2040
# samples 422
** MAII scorelog2(4/32*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(22/2040*10)=-3.2129937233342
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: TCOF1 [Title/Abstract] AND DSP [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneDSP

GO:0018149

peptide cross-linking

10908733

TgeneDSP

GO:0030216

keratinocyte differentiation

10908733


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BE165642TCOF1chr5

149776157

+DSPchr6

7581583

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000451292ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
5CDS-intronENST00000451292ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+
Frame-shiftENST00000377797ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
5CDS-intronENST00000377797ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+
Frame-shiftENST00000445265ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
5CDS-intronENST00000445265ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+
Frame-shiftENST00000323668ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
5CDS-intronENST00000323668ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+
Frame-shiftENST00000439160ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
5CDS-intronENST00000439160ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+
intron-3CDSENST00000394269ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
intron-intronENST00000394269ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+
Frame-shiftENST00000504761ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
5CDS-intronENST00000504761ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+
Frame-shiftENST00000513346ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
5CDS-intronENST00000513346ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+
intron-3CDSENST00000506063ENST00000379802TCOF1chr5

149776157

+DSPchr6

7581583

+
intron-intronENST00000506063ENST00000418664TCOF1chr5

149776157

+DSPchr6

7581583

+

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FusionProtFeatures for TCOF1_DSP


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
TCOF1

Q13428

DSP

P15924

Nucleolar protein that acts as a regulator of RNApolymerase I by connecting RNA polymerase I with enzymesresponsible for ribosomal processing and modification(PubMed:12777385, PubMed:26399832). Required for neural crestspecification: following monoubiquitination by the BCR(KBTBD8)complex, associates with NOLC1 and acts as a platform to connectRNA polymerase I with enzymes responsible for ribosomal processingand modification, leading to remodel the translational program ofdifferentiating cells in favor of neural crest specification(PubMed:26399832). {ECO:0000269|PubMed:12777385,ECO:0000269|PubMed:26399832}. Major high molecular weight protein of desmosomes.Involved in the organization of the desmosomal cadherin-plakoglobin complexes into discrete plasma membrane domains and inthe anchoring of intermediate filaments to the desmosomes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for TCOF1_DSP


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for TCOF1_DSP


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for TCOF1_DSP


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneDSPP15924DB01593ZincDesmoplakinsmall moleculeapproved|investigational
TgeneDSPP15924DB11638ArtenimolDesmoplakinsmall moleculeapproved|investigational

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RelatedDiseases for TCOF1_DSP


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneTCOF1C0242387Mandibulofacial Dysostosis2CTD_human;ORPHANET;UNIPROT
HgeneTCOF1C0376634Craniofacial Abnormalities1CTD_human
TgeneDSPC1843896Arrhythmogenic Right Ventricular Dysplasia, Familial, 83CTD_human;UNIPROT
TgeneDSPC4014393CARDIOMYOPATHY, DILATED, WITH WOOLLY HAIR, KERATODERMA, AND TOOTH AGENESIS2UNIPROT
TgeneDSPC0085298Sudden Cardiac Death1CTD_human;HPO
TgeneDSPC1800706Idiopathic Pulmonary Fibrosis1CTD_human;ORPHANET
TgeneDSPC1843292Skin Fragility-Woolly Hair Syndrome1CTD_human;ORPHANET;UNIPROT
TgeneDSPC1854063Cardiomyopathy dilated with Woolly hair and keratoderma1CTD_human;ORPHANET