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Fusion gene ID: 37628 |
FusionGeneSummary for TCOF1_ARMCX4 |
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Fusion gene information | Fusion gene name: TCOF1_ARMCX4 | Fusion gene ID: 37628 | Hgene | Tgene | Gene symbol | TCOF1 | ARMCX4 | Gene ID | 6949 | 100131755 |
Gene name | treacle ribosome biogenesis factor 1 | armadillo repeat containing X-linked 4 | |
Synonyms | MFD1|TCS|TCS1|treacle | CXorf35|GASP4 | |
Cytomap | 5q32-q33.1 | Xq22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | treacle proteinTreacher Collins syndrome proteinTreacher Collins-Franceschetti syndrome 1nucleolar trafficking phosphoprotein | armadillo repeat-containing X-linked protein 4armadillo repeat containing, X-linked 4 pseudogene | |
Modification date | 20180522 | 20180519 | |
UniProtAcc | Q13428 | Q5H9R4 | |
Ensembl transtripts involved in fusion gene | ENST00000451292, ENST00000377797, ENST00000445265, ENST00000323668, ENST00000439160, ENST00000394269, ENST00000504761, ENST00000513346, ENST00000506063, | ENST00000431677, ENST00000423738, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 1 X 1 X 1=1 |
# samples | 4 | 1 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: TCOF1 [Title/Abstract] AND ARMCX4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | CN479461 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-intron | ENST00000451292 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000451292 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000377797 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000377797 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000445265 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000445265 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000323668 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000323668 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000439160 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000439160 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
intron-intron | ENST00000394269 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
intron-intron | ENST00000394269 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
intron-intron | ENST00000504761 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
intron-intron | ENST00000504761 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000513346 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
3UTR-intron | ENST00000513346 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
intron-intron | ENST00000506063 | ENST00000431677 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
intron-intron | ENST00000506063 | ENST00000423738 | TCOF1 | chr5 | 149779401 | - | ARMCX4 | chrX | 100744617 | - |
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FusionProtFeatures for TCOF1_ARMCX4 |
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Hgene | Tgene |
TCOF1 | ARMCX4 |
Nucleolar protein that acts as a regulator of RNApolymerase I by connecting RNA polymerase I with enzymesresponsible for ribosomal processing and modification(PubMed:12777385, PubMed:26399832). Required for neural crestspecification: following monoubiquitination by the BCR(KBTBD8)complex, associates with NOLC1 and acts as a platform to connectRNA polymerase I with enzymes responsible for ribosomal processingand modification, leading to remodel the translational program ofdifferentiating cells in favor of neural crest specification(PubMed:26399832). {ECO:0000269|PubMed:12777385,ECO:0000269|PubMed:26399832}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TCOF1_ARMCX4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TCOF1_ARMCX4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TCOF1_ARMCX4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TCOF1_ARMCX4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TCOF1 | C0242387 | Mandibulofacial Dysostosis | 2 | CTD_human;ORPHANET;UNIPROT |
Hgene | TCOF1 | C0376634 | Craniofacial Abnormalities | 1 | CTD_human |