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Fusion gene ID: 37530 |
FusionGeneSummary for TCEA3_PRR16 |
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Fusion gene information | Fusion gene name: TCEA3_PRR16 | Fusion gene ID: 37530 | Hgene | Tgene | Gene symbol | TCEA3 | PRR16 | Gene ID | 6920 | 51334 |
Gene name | transcription elongation factor A3 | proline rich 16 | |
Synonyms | TFIIS|TFIIS.H | DSC54|LARGEN | |
Cytomap | 1p36.12 | 5q23.1 | |
Type of gene | protein-coding | protein-coding | |
Description | transcription elongation factor A protein 3rhabdomyosarcoma antigen MU-RMS-40.22transcription elongation factor A (SII), 3transcription elongation factor S-II protein 3transcription elongation factor TFIIS.h | protein Largenmesenchymal stem cell protein DSC54proline-rich protein 16 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | O75764 | Q569H4 | |
Ensembl transtripts involved in fusion gene | ENST00000450454, ENST00000374601, ENST00000461794, | ENST00000407149, ENST00000379551, ENST00000505123, ENST00000446965, | |
Fusion gene scores | * DoF score | 4 X 2 X 4=32 | 4 X 2 X 4=32 |
# samples | 4 | 4 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: TCEA3 [Title/Abstract] AND PRR16 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PRR16 | GO:0045727 | positive regulation of translation | 24656129 |
Tgene | PRR16 | GO:0045793 | positive regulation of cell size | 24656129 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-EJ-8474-01A | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000450454 | ENST00000407149 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
Frame-shift | ENST00000450454 | ENST00000379551 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000450454 | ENST00000505123 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000450454 | ENST00000446965 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
Frame-shift | ENST00000374601 | ENST00000407149 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
Frame-shift | ENST00000374601 | ENST00000379551 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000374601 | ENST00000505123 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000374601 | ENST00000446965 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
Frame-shift | ENST00000461794 | ENST00000407149 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
Frame-shift | ENST00000461794 | ENST00000379551 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000461794 | ENST00000505123 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
5CDS-5UTR | ENST00000461794 | ENST00000446965 | TCEA3 | chr1 | 23743742 | - | PRR16 | chr5 | 120021649 | + |
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FusionProtFeatures for TCEA3_PRR16 |
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Hgene | Tgene |
TCEA3 | PRR16 |
Necessary for efficient RNA polymerase II transcriptionelongation past template-encoded arresting sites. The arrestingsites in DNA have the property of trapping a certain fraction ofelongating RNA polymerases that pass through, resulting in lockedternary complexes. Cleavage of the nascent transcript by S-IIallows the resumption of elongation from the new 3'-terminus. | Regulator of cell size that promotes cell size increaseindependently of mTOR and Hippo signaling pathways. Acts bystimulating the translation of specific mRNAs, including thoseencoding proteins affecting mitochondrial functions. Increasesmitochondrial mass and respiration. {ECO:0000269|PubMed:24656129}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TCEA3_PRR16 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TCEA3_PRR16 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TCEA3 | RPH3AL | PRR16 | NEDD4, NEDD4L, PPP1CA, APP, PPP1CC, ABI2, SMURF1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TCEA3_PRR16 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TCEA3_PRR16 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |