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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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Fusion gene ID: 37429

FusionGeneSummary for TBC1D9_SMARCA5

check button Fusion gene summary
Fusion gene informationFusion gene name: TBC1D9_SMARCA5
Fusion gene ID: 37429
HgeneTgene
Gene symbol

TBC1D9

SMARCA5

Gene ID

23158

8467

Gene nameTBC1 domain family member 9SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
SynonymsGRAMD9|MDR1ISWI|SNF2H|WCRF135|hISWI|hSNF2H
Cytomap

4q31.21

4q31.21

Type of geneprotein-codingprotein-coding
DescriptionTBC1 domain family member 9TBC1 domain family member 9ATBC1 domain family, member 9 (with GRAM domain)SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5sucrose nonfermenting protein 2 homologsucrose nonfermenting-like 5
Modification date2018052320180519
UniProtAcc

Q6ZT07

O60264

Ensembl transtripts involved in fusion geneENST00000442267, ENST00000283131, 
Fusion gene scores* DoF score5 X 6 X 3=901 X 1 X 1=1
# samples 51
** MAII scorelog2(5/90*10)=-0.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: TBC1D9 [Title/Abstract] AND SMARCA5 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneSMARCA5

GO:0006334

nucleosome assembly

12972596

TgeneSMARCA5

GO:0006338

chromatin remodeling

9836642

TgeneSMARCA5

GO:0006352

DNA-templated transcription, initiation

9836642

TgeneSMARCA5

GO:0016584

nucleosome positioning

9836642


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-BH-A0BR-01ATBC1D9chr4

141560240

-SMARCA5chr4

144438508

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000442267ENST00000283131TBC1D9chr4

141560240

-SMARCA5chr4

144438508

+

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FusionProtFeatures for TBC1D9_SMARCA5


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
TBC1D9

Q6ZT07

SMARCA5

O60264

May act as a GTPase-activating protein for Rab familyprotein(s). Helicase that possesses intrinsic ATP-dependentnucleosome-remodeling activity. Complexes containing SMARCA5 arecapable of forming ordered nucleosome arrays on chromatin; thismay require intact histone H4 tails. Also required for replicationof pericentric heterochromatin in S-phase specifically inconjunction with BAZ1A. Probably plays a role in repression ofpolI dependent transcription of the rDNA locus, through therecruitment of the SIN3/HDAC1 corepressor complex to the rDNApromoter. Essential component of the WICH complex, a chromatinremodeling complex that mobilizes nucleosomes and reconfiguresirregular chromatin to a regular nucleosomal array structure. TheWICH complex regulates the transcription of various genes, has arole in RNA polymerase I and RNA polymerase III transcription,mediates the histone H2AX phosphorylation at 'Tyr-142', and isinvolved in the maintenance of chromatin structures during DNAreplication processes. Essential component of the NoRC (nucleolarremodeling complex) complex, a complex that mediates silencing ofa fraction of rDNA by recruiting histone-modifying enzymes and DNAmethyltransferases, leading to heterochromatin formation andtranscriptional silencing. {ECO:0000269|PubMed:10880450,ECO:0000269|PubMed:11980720, ECO:0000269|PubMed:12198550,ECO:0000269|PubMed:12434153, ECO:0000269|PubMed:12972596,ECO:0000269|PubMed:15543136, ECO:0000269|PubMed:16603771}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneTBC1D9chr4:141560240chr4:144438508ENST00000442267-1521146_2138351267DomainNote=GRAM 1
HgeneTBC1D9chr4:141560240chr4:144438508ENST00000442267-1521293_3618351267DomainNote=GRAM 2
HgeneTBC1D9chr4:141560240chr4:144438508ENST00000442267-1521515_7028351267DomainRab-GAP TBC
TgeneSMARCA5chr4:141560240chr4:144438508ENST00000283131+024192_357591053DomainHelicase ATP-binding
TgeneSMARCA5chr4:141560240chr4:144438508ENST00000283131+024487_638591053DomainHelicase C-terminal
TgeneSMARCA5chr4:141560240chr4:144438508ENST00000283131+024840_892591053DomainSANT 1
TgeneSMARCA5chr4:141560240chr4:144438508ENST00000283131+024943_1007591053DomainSANT 2
TgeneSMARCA5chr4:141560240chr4:144438508ENST00000283131+024308_311591053MotifNote=DEAH box
TgeneSMARCA5chr4:141560240chr4:144438508ENST00000283131+024205_212591053Nucleotide bindingATP

- In-frame and not-retained protein feature among the 13 regional features.
>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneTBC1D9chr4:141560240chr4:144438508ENST00000442267-1521886_9218351267DomainEF-hand
TgeneSMARCA5chr4:141560240chr4:144438508ENST00000283131+0247_13591053Compositional biasNote=Poly-Pro


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FusionGeneSequence for TBC1D9_SMARCA5


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_TBC1D9_ENST00000442267_chr4_141560240_-_SMARCA5_ENST00000283131_chr4_144438508_+_1829aa
MWVNPEEVLLANALWITERANPYFILQRRKGHAGDGGGGGGLAGLLVGTLDVVLDSSARVAPYRILYQTPDSLVYWTIACGGSRKEITEH
WEWLEQNLLQTLSIFENENDITTFVRGKIQGIIAEYNKINDVKEDDDTEKFKEAIVKFHRLFGMPEEEKLVNYYSCSYWKGKVPRQGWMY
LSINHLCFYSFLMGREAKLVIRWVDITQLEKNATLLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQLANIAMRQLLDNEGFEQDRSLPK
LKRKSPKKVSALKRDLDARAKSERYRALFRLPKDEKLDGHTDCTLWTPFNKMHILGQMFVSTNYICFTSKEENLCSLIIPLREVTIVEKA
DSSSVLPSPLSISTRNRMTFLFANLKDRDFLVQRISDFLQQTTSKIYSDKEFAGSYNSSDDEVYSRPSSLVSSSPQRSTSSDADGERQFN
LNGNSVPTATQTLMTMYRRRSPEEFNPKLAKEFLKEQAWKIHFAEYGQGICMYRTEKTRELVLKGIPESMRGELWLLLSGAINEKATHPG
YYEDLVEKSMGKYNLATEEIERDLHRSLPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAKEEEAFWLLVALCERM
LPDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGVISTISLSWFLTLFLSVMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDK
LLNCKDDGEAMTVLGRYLDSVTNKDSTLPPIPHLHSLLSDDVEPYPEVDIFRLIRTSYEKFGTIRADLIEQMRFKQRLKVIQTLEDTTKR
NVVRTIVTETSFTIDELEELYALFKEIFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGR
PRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQ
TISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRY
LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLR
RIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGK
MVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVV
ILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFAS
KESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRV
SEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTN
WNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQ
LRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKK


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_TBC1D9_ENST00000442267_chr4_141560240_-_SMARCA5_ENST00000283131_chr4_144438508_+_5487nt
ATGTGGGTGAACCCGGAGGAGGTGTTGCTGGCCAACGCGCTGTGGATCACCGAGAGGGCCAACCCATACTTCATCCTGCAGCGGAGGAAG
GGCCACGCCGGCGATGGAGGCGGCGGCGGCGGACTGGCGGGCCTGCTGGTGGGTACCCTTGATGTTGTGTTGGACTCCAGCGCCCGGGTC
GCTCCTTACCGAATCTTGTACCAGACTCCAGACTCCCTGGTCTACTGGACCATCGCCTGTGGTGGTTCCAGGAAAGAAATCACTGAACAC
TGGGAATGGCTTGAGCAAAATCTCTTGCAGACACTCTCCATCTTTGAAAATGAGAATGATATCACCACATTTGTGAGAGGAAAAATACAG
GGCATCATTGCAGAATACAACAAAATCAATGATGTAAAGGAAGATGATGACACGGAGAAGTTTAAAGAAGCCATTGTGAAATTTCATAGG
CTGTTTGGGATGCCAGAGGAAGAGAAACTCGTCAACTATTACTCTTGCAGCTATTGGAAGGGGAAGGTCCCCCGTCAGGGTTGGATGTAC
CTCAGCATTAACCACCTTTGCTTTTATTCTTTTCTTATGGGAAGGGAAGCGAAACTGGTCATCCGGTGGGTAGACATCACTCAGCTTGAG
AAGAATGCCACCCTGCTTCTGCCTGATGTGATCAAAGTGAGCACACGGTCCAGTGAGCATTTCTTCTCTGTATTCCTCAACATCAACGAG
ACCTTCAAGTTAATGGAGCAGCTTGCCAACATAGCCATGAGGCAACTCTTAGACAATGAGGGATTTGAACAAGATCGATCCCTGCCCAAA
CTCAAAAGGAAATCTCCTAAAAAAGTGTCTGCTCTAAAACGTGATCTTGATGCCAGGGCAAAGAGTGAGAGATACCGTGCACTTTTCCGG
CTGCCCAAAGATGAAAAATTAGATGGCCACACAGACTGCACTCTCTGGACTCCATTTAACAAAATGCACATTTTGGGGCAGATGTTTGTG
TCCACAAATTACATCTGTTTTACCAGCAAGGAGGAGAACTTATGTAGCCTCATTATCCCGCTCCGTGAGGTGACAATTGTGGAAAAGGCA
GACAGCTCCAGTGTGCTCCCCAGTCCCTTATCCATCAGCACCCGAAACAGGATGACCTTCCTATTTGCCAACTTGAAAGATAGAGACTTT
CTAGTGCAGAGGATCTCAGATTTCCTGCAACAGACTACTTCCAAAATATATTCTGACAAGGAGTTTGCAGGAAGTTACAACAGTTCAGAT
GATGAGGTGTACTCTCGACCCAGCAGCCTCGTCTCCTCCAGCCCCCAGAGAAGCACGAGCTCTGATGCTGATGGAGAGCGCCAGTTTAAC
CTAAATGGCAACAGCGTCCCCACAGCCACACAGACCCTGATGACCATGTATCGGCGGCGGTCTCCCGAGGAGTTCAACCCGAAATTGGCC
AAAGAGTTTCTGAAAGAGCAAGCCTGGAAGATTCACTTTGCTGAGTATGGGCAAGGGATCTGCATGTACCGCACAGAGAAAACGCGGGAG
CTGGTGTTGAAGGGCATCCCGGAGAGCATGCGTGGGGAGCTCTGGCTGCTGCTGTCAGGTGCCATCAATGAGAAGGCCACACATCCTGGG
TACTATGAAGACCTAGTGGAGAAGTCCATGGGGAAGTATAATCTCGCCACGGAGGAGATTGAGAGGGATTTACACCGCTCCCTTCCAGAA
CACCCAGCTTTTCAGAATGAAATGGGCATTGCTGCACTAAGGAGAGTCTTAACAGCTTATGCTTTTCGAAATCCCAACATAGGGTATTGC
CAGGCCATGAATATTGTCACTTCAGTGCTGCTGCTTTATGCCAAAGAGGAGGAAGCTTTCTGGCTGCTTGTGGCTTTGTGTGAGCGCATG
CTCCCAGATTACTACAACACCAGAGTTGTGGGTGCACTGGTGGACCAAGGTGTCTTTGAGGAGCTAGCACGAGACTACGTCCCACAGCTG
TACGACTGCATGCAAGACCTGGGCGTGATTTCCACCATCTCCCTGTCTTGGTTCCTCACACTATTTCTCAGTGTGATGCCTTTTGAGAGT
GCAGTTGTGGTTGTTGACTGTTTCTTCTATGAAGGAATTAAAGTGATATTCCAGTTGGCCCTAGCTGTGCTGGATGCAAATGTGGACAAA
CTGTTGAACTGCAAGGATGATGGGGAGGCCATGACCGTTTTGGGAAGGTATTTAGACAGTGTGACCAATAAAGACAGCACACTGCCTCCC
ATTCCTCACCTCCACTCCTTGCTCAGCGATGATGTGGAACCTTACCCTGAGGTAGACATCTTTAGACTCATCAGAACTTCCTACGAGAAA
TTCGGAACTATCCGGGCAGATTTGATTGAACAGATGAGATTCAAACAGAGACTGAAAGTGATCCAGACGCTGGAGGATACTACGAAACGC
AACGTGGTACGAACCATTGTGACAGAAACTTCCTTTACCATTGATGAGCTGGAAGAACTTTATGCTCTTTTCAAGGAAATATTTGATGAT
GCGTCACCTGGAAAGCAAAAGGAAATCCAAGAACCAGATCCTACCTATGAAGAAAAAATGCAAACTGACCGGGCAAATAGATTCGAGTAT
TTATTAAAGCAGACAGAACTTTTTGCACATTTCATTCAACCTGCTGCTCAGAAGACTCCAACTTCACCTTTGAAGATGAAACCAGGGCGC
CCACGAATAAAAAAAGATGAGAAGCAGAACTTACTATCCGTTGGCGATTACCGACACCGTAGAACAGAGCAAGAGGAGGATGAAGAGCTA
TTAACAGAAAGCTCCAAAGCAACCAATGTTTGCACTCGATTTGAAGACTCTCCATCGTATGTAAAATGGGGTAAACTGAGAGATTATCAG
GTCCGAGGATTAAACTGGCTCATTTCTTTGTATGAGAATGGCATCAATGGTATCCTTGCAGATGAAATGGGCCTAGGAAAGACTCTTCAA
ACAATTTCTCTTCTTGGGTACATGAAACATTATAGAAACATTCCTGGGCCTCATATGGTTTTGGTTCCTAAGTCTACATTACACAACTGG
ATGAGTGAATTCAAGAGATGGGTACCAACACTTAGATCTGTTTGTTTGATAGGAGATAAAGAACAAAGAGCTGCTTTTGTCAGAGACGTT
TTATTACCGGGAGAATGGGATGTATGTGTAACATCTTATGAAATGCTTATTAAAGAGAAGTCTGTGTTCAAAAAATTTAATTGGAGATAC
TTAGTAATAGATGAAGCTCACAGGATCAAAAATGAAAAATCTAAGTTGTCAGAAATAGTGAGGGAATTCAAGACTACAAATAGACTATTA
TTAACTGGAACACCTCTTCAGAACAACTTGCATGAGCTGTGGTCACTTCTTAACTTTCTGTTGCCAGATGTGTTTAATTCAGCAGATGAC
TTTGATTCCTGGTTTGATACAAACAACTGCCTTGGGGATCAAAAACTAGTTGAGAGGCTTCATATGGTTTTGCGTCCATTCCTCCTTCGT
CGAATTAAGGCTGATGTTGAAAAGAGTTTGCCTCCAAAGAAGGAAGTAAAAATCTATGTGGGCCTCAGCAAAATGCAAAGGGAATGGTAT
ACTCGGATATTAATGAAGGATATAGATATACTCAACTCAGCAGGCAAGATGGACAAAATGAGGTTATTGAACATCCTAATGCAGTTGAGA
AAATGTTGTAATCATCCATATCTCTTTGATGGAGCAGAACCTGGTCCACCTTATACAACAGATATGCATCTAGTAACCAACAGTGGCAAA
ATGGTGGTTTTAGACAAGCTGCTCCCTAAGTTAAAAGAACAAGGTTCACGAGTACTAATCTTCAGTCAAATGACAAGGGTATTGGACATT
TTGGAAGATTATTGCATGTGGAGAAATTATGAGTACTGCAGGTTGGATGGTCAGACACCCCATGATGAGAGACAAGACTCCATCAATGCA
TACAATGAACCAAACAGCACAAAGTTTGTTTTCATGTTAAGCACGCGTGCTGGTGGTCTTGGCATCAATCTTGCGACTGCTGATGTAGTA
ATTTTGTATGATTCTGATTGGAATCCCCAAGTAGATCTTCAGGCTATGGACCGAGCACATAGAATTGGGCAGACTAAGACAGTCAGAGTG
TTCCGCTTTATAACTGATAACACTGTAGAAGAAAGAATAGTAGAACGTGCTGAGATGAAACTCAGACTGGATTCAATAGTCATTCAACAA
GGGAGGCTTGTGGATCAGAATCTGAACAAAATTGGGAAAGATGAAATGCTTCAAATGATTAGACATGGAGCAACACATGTGTTTGCTTCA
AAGGAAAGTGAGATCACTGATGAAGATATCGATGGTATTTTGGAAAGAGGTGCAAAGAAGACTGCAGAGATGAATGAAAAGCTCTCCAAG
ATGGGCGAAAGTTCACTTAGAAACTTTACAATGGATACAGAGTCAAGTGTTTATAACTTCGAAGGAGAAGACTATAGAGAAAAACAAAAG
ATTGCATTCACAGAGTGGATTGAACCACCTAAACGAGAAAGAAAAGCCAACTATGCCGTTGATGCATATTTCAGGGAAGCTCTTCGTGTT
AGTGAACCTAAAGCACCCAAGGCTCCTCGACCTCCAAAACAACCCAATGTTCAGGATTTCCAGTTCTTTCCTCCACGTTTATTTGAATTA
CTGGAAAAAGAAATTCTGTTTTACAGAAAAACTATTGGGTACAAGGTACCTCGAAATCCTGAGCTGCCTAATGCAGCACAGGCACAAAAA
GAAGAACAGCTTAAAATTGATGAAGCTGAATCCCTTAATGATGAAGAGTTAGAGGAAAAAGAGAAGCTTCTAACACAGGGATTTACCAAT
TGGAATAAGAGAGATTTTAACCAGTTTATCAAAGCTAATGAGAAGTGGGGTCGTGATGATATTGAAAATATAGCAAGAGAAGTAGAAGGC
AAAACTCCAGAAGAAGTCATTGAATATTCAGCTGTGTTTTGGGAAAGGTGCAACGAGCTCCAGGACATAGAGAAGATTATGGCTCAGATT
GAAAGGGGAGAGGCGAGAATTCAAAGAAGAATAAGCATCAAGAAAGCACTTGACACAAAGATTGGACGGTACAAAGCACCTTTTCATCAG
CTGAGAATATCATATGGTACTAACAAAGGAAAAAACTATACTGAAGAAGAAGATCGTTTTCTGATTTGTATGCTTCACAAACTTGGATTT
GACAAAGAAAATGTTTATGATGAATTGCGACAGTGTATTCGCAACTCTCCTCAGTTCAGATTTGACTGGTTTCTTAAGTCCAGAACTGCA
ATGGAGCTCCAGAGGAGATGTAATACCTTAATTACTTTGATTGAAAGAGAAAACATGGAACTAGAAGAAAAGGAGAAGGCAGAGAAAAAG


* Fusion transcript sequences (Full-length transcript).
>In-frame_TBC1D9_ENST00000442267_chr4_141560240_-_SMARCA5_ENST00000283131_chr4_144438508_+_9864nt
GCGCGCCTGTCGCGGTGGTGGGTGCAGGACTGGACCCACGGGCCCATTGTGCGCCCGCCCGCGGCAGCCAGGACCATGTGGGTGAACCCG
GAGGAGGTGTTGCTGGCCAACGCGCTGTGGATCACCGAGAGGGCCAACCCATACTTCATCCTGCAGCGGAGGAAGGGCCACGCCGGCGAT
GGAGGCGGCGGCGGCGGACTGGCGGGCCTGCTGGTGGGTACCCTTGATGTTGTGTTGGACTCCAGCGCCCGGGTCGCTCCTTACCGAATC
TTGTACCAGACTCCAGACTCCCTGGTCTACTGGACCATCGCCTGTGGTGGTTCCAGGAAAGAAATCACTGAACACTGGGAATGGCTTGAG
CAAAATCTCTTGCAGACACTCTCCATCTTTGAAAATGAGAATGATATCACCACATTTGTGAGAGGAAAAATACAGGGCATCATTGCAGAA
TACAACAAAATCAATGATGTAAAGGAAGATGATGACACGGAGAAGTTTAAAGAAGCCATTGTGAAATTTCATAGGCTGTTTGGGATGCCA
GAGGAAGAGAAACTCGTCAACTATTACTCTTGCAGCTATTGGAAGGGGAAGGTCCCCCGTCAGGGTTGGATGTACCTCAGCATTAACCAC
CTTTGCTTTTATTCTTTTCTTATGGGAAGGGAAGCGAAACTGGTCATCCGGTGGGTAGACATCACTCAGCTTGAGAAGAATGCCACCCTG
CTTCTGCCTGATGTGATCAAAGTGAGCACACGGTCCAGTGAGCATTTCTTCTCTGTATTCCTCAACATCAACGAGACCTTCAAGTTAATG
GAGCAGCTTGCCAACATAGCCATGAGGCAACTCTTAGACAATGAGGGATTTGAACAAGATCGATCCCTGCCCAAACTCAAAAGGAAATCT
CCTAAAAAAGTGTCTGCTCTAAAACGTGATCTTGATGCCAGGGCAAAGAGTGAGAGATACCGTGCACTTTTCCGGCTGCCCAAAGATGAA
AAATTAGATGGCCACACAGACTGCACTCTCTGGACTCCATTTAACAAAATGCACATTTTGGGGCAGATGTTTGTGTCCACAAATTACATC
TGTTTTACCAGCAAGGAGGAGAACTTATGTAGCCTCATTATCCCGCTCCGTGAGGTGACAATTGTGGAAAAGGCAGACAGCTCCAGTGTG
CTCCCCAGTCCCTTATCCATCAGCACCCGAAACAGGATGACCTTCCTATTTGCCAACTTGAAAGATAGAGACTTTCTAGTGCAGAGGATC
TCAGATTTCCTGCAACAGACTACTTCCAAAATATATTCTGACAAGGAGTTTGCAGGAAGTTACAACAGTTCAGATGATGAGGTGTACTCT
CGACCCAGCAGCCTCGTCTCCTCCAGCCCCCAGAGAAGCACGAGCTCTGATGCTGATGGAGAGCGCCAGTTTAACCTAAATGGCAACAGC
GTCCCCACAGCCACACAGACCCTGATGACCATGTATCGGCGGCGGTCTCCCGAGGAGTTCAACCCGAAATTGGCCAAAGAGTTTCTGAAA
GAGCAAGCCTGGAAGATTCACTTTGCTGAGTATGGGCAAGGGATCTGCATGTACCGCACAGAGAAAACGCGGGAGCTGGTGTTGAAGGGC
ATCCCGGAGAGCATGCGTGGGGAGCTCTGGCTGCTGCTGTCAGGTGCCATCAATGAGAAGGCCACACATCCTGGGTACTATGAAGACCTA
GTGGAGAAGTCCATGGGGAAGTATAATCTCGCCACGGAGGAGATTGAGAGGGATTTACACCGCTCCCTTCCAGAACACCCAGCTTTTCAG
AATGAAATGGGCATTGCTGCACTAAGGAGAGTCTTAACAGCTTATGCTTTTCGAAATCCCAACATAGGGTATTGCCAGGCCATGAATATT
GTCACTTCAGTGCTGCTGCTTTATGCCAAAGAGGAGGAAGCTTTCTGGCTGCTTGTGGCTTTGTGTGAGCGCATGCTCCCAGATTACTAC
AACACCAGAGTTGTGGGTGCACTGGTGGACCAAGGTGTCTTTGAGGAGCTAGCACGAGACTACGTCCCACAGCTGTACGACTGCATGCAA
GACCTGGGCGTGATTTCCACCATCTCCCTGTCTTGGTTCCTCACACTATTTCTCAGTGTGATGCCTTTTGAGAGTGCAGTTGTGGTTGTT
GACTGTTTCTTCTATGAAGGAATTAAAGTGATATTCCAGTTGGCCCTAGCTGTGCTGGATGCAAATGTGGACAAACTGTTGAACTGCAAG
GATGATGGGGAGGCCATGACCGTTTTGGGAAGGTATTTAGACAGTGTGACCAATAAAGACAGCACACTGCCTCCCATTCCTCACCTCCAC
TCCTTGCTCAGCGATGATGTGGAACCTTACCCTGAGGTAGACATCTTTAGACTCATCAGAACTTCCTACGAGAAATTCGGAACTATCCGG
GCAGATTTGATTGAACAGATGAGATTCAAACAGAGACTGAAAGTGATCCAGACGCTGGAGGATACTACGAAACGCAACGTGGTACGAACC
ATTGTGACAGAAACTTCCTTTACCATTGATGAGCTGGAAGAACTTTATGCTCTTTTCAAGGAAATATTTGATGATGCGTCACCTGGAAAG
CAAAAGGAAATCCAAGAACCAGATCCTACCTATGAAGAAAAAATGCAAACTGACCGGGCAAATAGATTCGAGTATTTATTAAAGCAGACA
GAACTTTTTGCACATTTCATTCAACCTGCTGCTCAGAAGACTCCAACTTCACCTTTGAAGATGAAACCAGGGCGCCCACGAATAAAAAAA
GATGAGAAGCAGAACTTACTATCCGTTGGCGATTACCGACACCGTAGAACAGAGCAAGAGGAGGATGAAGAGCTATTAACAGAAAGCTCC
AAAGCAACCAATGTTTGCACTCGATTTGAAGACTCTCCATCGTATGTAAAATGGGGTAAACTGAGAGATTATCAGGTCCGAGGATTAAAC
TGGCTCATTTCTTTGTATGAGAATGGCATCAATGGTATCCTTGCAGATGAAATGGGCCTAGGAAAGACTCTTCAAACAATTTCTCTTCTT
GGGTACATGAAACATTATAGAAACATTCCTGGGCCTCATATGGTTTTGGTTCCTAAGTCTACATTACACAACTGGATGAGTGAATTCAAG
AGATGGGTACCAACACTTAGATCTGTTTGTTTGATAGGAGATAAAGAACAAAGAGCTGCTTTTGTCAGAGACGTTTTATTACCGGGAGAA
TGGGATGTATGTGTAACATCTTATGAAATGCTTATTAAAGAGAAGTCTGTGTTCAAAAAATTTAATTGGAGATACTTAGTAATAGATGAA
GCTCACAGGATCAAAAATGAAAAATCTAAGTTGTCAGAAATAGTGAGGGAATTCAAGACTACAAATAGACTATTATTAACTGGAACACCT
CTTCAGAACAACTTGCATGAGCTGTGGTCACTTCTTAACTTTCTGTTGCCAGATGTGTTTAATTCAGCAGATGACTTTGATTCCTGGTTT
GATACAAACAACTGCCTTGGGGATCAAAAACTAGTTGAGAGGCTTCATATGGTTTTGCGTCCATTCCTCCTTCGTCGAATTAAGGCTGAT
GTTGAAAAGAGTTTGCCTCCAAAGAAGGAAGTAAAAATCTATGTGGGCCTCAGCAAAATGCAAAGGGAATGGTATACTCGGATATTAATG
AAGGATATAGATATACTCAACTCAGCAGGCAAGATGGACAAAATGAGGTTATTGAACATCCTAATGCAGTTGAGAAAATGTTGTAATCAT
CCATATCTCTTTGATGGAGCAGAACCTGGTCCACCTTATACAACAGATATGCATCTAGTAACCAACAGTGGCAAAATGGTGGTTTTAGAC
AAGCTGCTCCCTAAGTTAAAAGAACAAGGTTCACGAGTACTAATCTTCAGTCAAATGACAAGGGTATTGGACATTTTGGAAGATTATTGC
ATGTGGAGAAATTATGAGTACTGCAGGTTGGATGGTCAGACACCCCATGATGAGAGACAAGACTCCATCAATGCATACAATGAACCAAAC
AGCACAAAGTTTGTTTTCATGTTAAGCACGCGTGCTGGTGGTCTTGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATGATTCT
GATTGGAATCCCCAAGTAGATCTTCAGGCTATGGACCGAGCACATAGAATTGGGCAGACTAAGACAGTCAGAGTGTTCCGCTTTATAACT
GATAACACTGTAGAAGAAAGAATAGTAGAACGTGCTGAGATGAAACTCAGACTGGATTCAATAGTCATTCAACAAGGGAGGCTTGTGGAT
CAGAATCTGAACAAAATTGGGAAAGATGAAATGCTTCAAATGATTAGACATGGAGCAACACATGTGTTTGCTTCAAAGGAAAGTGAGATC
ACTGATGAAGATATCGATGGTATTTTGGAAAGAGGTGCAAAGAAGACTGCAGAGATGAATGAAAAGCTCTCCAAGATGGGCGAAAGTTCA
CTTAGAAACTTTACAATGGATACAGAGTCAAGTGTTTATAACTTCGAAGGAGAAGACTATAGAGAAAAACAAAAGATTGCATTCACAGAG
TGGATTGAACCACCTAAACGAGAAAGAAAAGCCAACTATGCCGTTGATGCATATTTCAGGGAAGCTCTTCGTGTTAGTGAACCTAAAGCA
CCCAAGGCTCCTCGACCTCCAAAACAACCCAATGTTCAGGATTTCCAGTTCTTTCCTCCACGTTTATTTGAATTACTGGAAAAAGAAATT
CTGTTTTACAGAAAAACTATTGGGTACAAGGTACCTCGAAATCCTGAGCTGCCTAATGCAGCACAGGCACAAAAAGAAGAACAGCTTAAA
ATTGATGAAGCTGAATCCCTTAATGATGAAGAGTTAGAGGAAAAAGAGAAGCTTCTAACACAGGGATTTACCAATTGGAATAAGAGAGAT
TTTAACCAGTTTATCAAAGCTAATGAGAAGTGGGGTCGTGATGATATTGAAAATATAGCAAGAGAAGTAGAAGGCAAAACTCCAGAAGAA
GTCATTGAATATTCAGCTGTGTTTTGGGAAAGGTGCAACGAGCTCCAGGACATAGAGAAGATTATGGCTCAGATTGAAAGGGGAGAGGCG
AGAATTCAAAGAAGAATAAGCATCAAGAAAGCACTTGACACAAAGATTGGACGGTACAAAGCACCTTTTCATCAGCTGAGAATATCATAT
GGTACTAACAAAGGAAAAAACTATACTGAAGAAGAAGATCGTTTTCTGATTTGTATGCTTCACAAACTTGGATTTGACAAAGAAAATGTT
TATGATGAATTGCGACAGTGTATTCGCAACTCTCCTCAGTTCAGATTTGACTGGTTTCTTAAGTCCAGAACTGCAATGGAGCTCCAGAGG
AGATGTAATACCTTAATTACTTTGATTGAAAGAGAAAACATGGAACTAGAAGAAAAGGAGAAGGCAGAGAAAAAGAAACGAGGACCAAAG
CCTTCAACACAGAAACGTAAAATGGATGGCGCACCTGATGGTCGAGGAAGAAAAAAGAAGCTGAAACTATGAATATGTTTTTGTTTCATA
ATCACTAACTTTAAACCAGTAGTTCTTTAATTTACGGGTCTTCATAAGATGTACTGTACAATGCTCAATTGTTATGTCATTTAAAGACAT
CAGGTTCATCTGTTTACTGAGCTAGAAACATAGTATGTAGTTTCACTTTTTTAAATGCAACAGCTGTGCTGAAATTTTTTTATCATTAAC
ACTTGAAGTAATAAAATAGGCTTCATTTATTACTAAGTGTTTCATTTGATTTATTTTTCTATTGTAGTTCCATTTGTGAAGATTGTGACT
TTTTGTTTATTAGCTATAATTTCTACACTTGTAAGGCTTAAAAACAAGTTAAAAAGAAAATTGCAAATAACATTTGTCCCTTTCAGTCTT
CACCTAGTTGTGTAATTATTTTAATTCACTTTGCCTTTGCAGAAATTTGGGTATTTTCTTTGTAGTGCTATTGAGTCTCATCTGGAAAGA
TTATATAAATTGCATTCTCCTTGCTTATGTGGGTAGAATGGGAAAAGAAGGCAAGACAAAGTATACTTAAATTCTATGCATATTTCTGTT
ATGCTTTCTGTTTTTTTTAGTTGATTCTGAAATGAATATGCCCTATTCTTTTGAAAGAATGGCCTTTTAGTTGTATAGCCAAAGACATTT
AGTATTTTCCGGTTCCTTAAGGTATTACTGTACCATTTTGTAAAAGGAATATTATTATTATTATTTTTAATTATTTGGTAAATATTTTGT
CATATGACCTTCTGAAGCAGCCACAACTTAGATAATGTCAGAACTAAGGTGATTTTTTTTTTTTAATTTTGAAAGCCCAGCCAAAATGAG
GTGTGAATTTGTCATACTGTTACATTGAAATTGGTAACAAAATATATCCCCTCCCATTTGGACTTTTAGGGTAAATGAAAATTTTATTGT
ATTTTAAAGTAGTTTCTAAGTGTTAGCAAGACTGACTATAATTCCAGTTTCTGTTTTCTATGGACAGACCTGATAAACTGGAGACCCTAA
AGCAGGAATACCCAAATTATAGTGTCAGGATTTTAGCTGTACCAGAGGCCTTTATGTGCTACACATAATTTGTATAAAATTTTATATGTG
CAGATTGGGTACATAAACAGTTCTCCATTTTTCTAAGGGAATGCAATAAATGTAGCATCGTGAATAAATATAACTTTTATAATCCGTAAA
GTGGTCTTTTCTTTCCATTTCTTTAATTGTTTTCTCAATTTTTATTCACTTTTTCCTTTAGGACACATTTCCCTTAATTGGATATCTTTC
CCTTAAATTTCTATTAGTAGTTGTTTTCATCTGCCCACATGTAATTGAAGATTTAAAAAAAAAATTTTGATACCTGCAGTATTACTAATA
CTGCTTAATTTCTTGAAATGTGGAATTGCTGCTGTTAATGTCAAGCAAAACGCAGTATTTATGGCAAATTGTAAAGTAATTTGAATTTAG
TGCTACCTCAAAATTAACTTTTTAAATACTATGTTAGATTCTTAACAGTTAAAGGTCTAATACATGCATGAGGAATGGTTACTTATGAAA
GGAAAAAGAATTTGTAAGAGTTATCACCTCAGTTTGGAAGAAATTGAAAAAATGTAAGGCTGAAGAAAACTTACGGAGGTCACAAAAGTG
ATGTTTTCAAGAGGAGGAGAAACTGGGAGGGAGATACACAGTGGAAATGCAAAATGAATCAAGTATAGTGGTAGCCCTGAGAGCTTAGGG
ACTCAAATGGAAACTGTGTGAAGGGAAACTCACTTGAAAAAAAAGCATGAACCAGCTAGGCCCTGCCACCACTGTGTTTGGCCAAGTTCA
CAAATCTGTTTTAACCTGTCACTTCCCTGTCACTTCTCTGGCTTTCCTCTCCCGCTAAGCTTTTGTTTCCTGGCAGTAATTAAAATCTTC
TGTCAGTGCCACAGCTACTACTGCTACTGGAACTGCCTTAACCACTACTGCTACTGGAACTGCCTTAGCCACCTTGGTATCGTGGTTTGG
CAAAGTATTGGCCTCTACCACCATAGGGCCCAGAGCTTCTGCCTCCAAAGTTTCCTCCCTTCATGGGTCCAAAATTTGAAGACTGATTGT
TGTCATTGCCAAAATCATTGTAGCTTTTACCACCTCCAAAATTGCTTCAATCATTACCAAATCTATTATAGCAATCCCCACTGCCACCAT
ATCCATCACCACCACCATGGCTGCCACCAAAGCCACCACGATCACAGAACTTGATGACTGTATTTGTGACTAATTGTATAATAGTTTCTG
TTCTGTGGAAAGTAAAGCATTCCAACACAGGGTTTCAGTGTAGATTGTTTTGTTTTGTACCCATGCTGTTGATTGCTAAATGTTTTAATA
ATCTGATCATGATACTGAATAAATGTCTTTTTTTTTTTTTAACAACAAAGCATGAAAGATTGCTTAATTGTACATCTGACAAAGTGCTGG
AGGCTATTATAAAGTGTAATTATTACTACTTTTAAGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCACAGCT
CACTGCAACCTCAAACTTCAGGGCTCAAGTGATCCTCCCACCTCAGCTTCCCAAGTAGCTAGGACTACAGATACCACGCCCAGCTAAGTT
TTTTTAGTTTTTGTAGAGATAGGGCCTTGCTATGTTGCCCAGTCCGGTCTCAAACGCCGACTTCAGGCAATCCTCTTGCGTCAACCTCTC
AAAGTGCTGGGATTACATGTGTAAGCCTACATTCCAAAGTGCTGGGATCATAGTTGTGAGCCTACACCACACCTGGCCTACATTTTGTTT
TTCATAAAGTTGAGAGAAGCAAATCCTAAGCATAGAGTACAAGTTGAGCATCCCTAATCAAAAAATCTAAAATCAGAAATGCTCCATAAT
TTGAATGCTCATTAGGGCATTTCTGATTTTTGGATTAGGGATGCTGAACTGATAAGTATAATGCAAGTATTCTAAAGTCTGGAAAATGCT
AAAAACACTTCTGGTTCCAGGCATTTCAGATAAGGATTGCTCCATCTGCCCTTTGAGTATTTAATATATGCCGATTGTTTGAACTAATCT
GGATTTAATTATATAAATGATTATATAAATGATCTTTGGCTTAGTACCTTTCTTAATCTCGATCTTAAAAAGCATTGTAAAACACCCCTG
TGGTTTTTCAGAAAAATTCTGAGTAAAAAATAAATTTCATCTTGTTCTATCCCTTTGAATCTAAAAAACAAATCTTTTTGAAAGGATGTG
CTACTATATTTCAAACCAGTAGTTTTGGAGTAGAACATTGCTAAAAAAATGGGTACTAAGGAGGGTAATTTAAACAAAGTAGATTAATGA
CACAAGGTGGATTGATGAACTCATAAATCCAAATGAATGGAATGCTAGAAGACATGTATTAACGGAGTAGCTGTTACCAAAATATATACA
TATTTTGTATATGTACATAGCTGTTACCAAAATGTATCTTTGCCTGTTGGAATCTGATGTCAAGATCAAAGGTGAGGGCATCCCTCAGAT
GACAGATAATGGGCAAAATACATTCTTGGTGTGGAGCAGTGCTGCAGAATTAACTTCGCTGTGTACATCCCAGAATCGTTTTGGATCTGT
TAAGGTTTTTATTAGAATGATTAAATAGGCTTTTGCAGCATTAACTTTACAGTAGTTACCAGAAAAGACTATGCTACAAGAACCAAAATT
GAAGTAAGAAGAAAAAGACTGAAATGATATGATTCTAAATGAAAAAAATGAAGAAGTGGAATAGTTTCTCCACAGGCATAAGAGGCAAAG
CATTGTTTCAGAAGTGGACTGGCACCTCACCTGAGATACTCAAGACTGGCAACATGGGTCTACATTCTTTGTTACCACAGATTCCCTTGT
GTCCGGAGAGATTCCCTAGCTCTAATGACAGCTTTTTTGGGGGGTAATGAGGCTATGAGAAGATTGAGGATCTAGGTACTTGCCTTTAAC
TCTACAGCATACAAGGTGTGTGGCTCTTATCTCTAGGACACCAATATTTAATGTTGCATATCATGTATCTCCAGTACAAGAAGAAAGTTT
ATCAGAATTTAGTTAATGTTGGAAACTTTGTAATATAAACAATGTAAACACTACATTGACAAAAATATTTTATTAATACAAAGAATATGC
ATATAGTTTGCTTACTACAGAAATTCTTGTTTTTGATGTAGACAACCCAAAGGAGTTTTTATGTATATAGATTGTGAATAAATTGGGAAA


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FusionGenePPI for TBC1D9_SMARCA5


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
TBC1D9MAP1LC3B, GABARAPL2, MAP1LC3A, GABARAPL1, LANCL1, PRICKLE3, SRSF2, SNRPE, SSB, YME1L1, DDX41, PRPF38B, ABHD16A, TBC1D9B, TMEM55A, MRS2, CPT1A, EPHA1, MUL1SMARCA5DNMT3B, BAZ2A, BAZ1A, POLE3, CHRAC1, BAZ1B, SATB1, RAD21, HDAC2, RBBP4, CHD3, SMC1A, SMC3, CDT1, CTNNB1, HIST1H4A, MAF, CREB1, MYO1C, SIN3A, RSF1, MCM3, HIST2H2AB, HIST1H3A, DNMT1, CENPA, USF1, XRCC5, MYC, SMARCAD1, SOX2, CECR2, UBTF, POLR1A, MYBBP1A, HDGF, CEBPB, CUL5, CDK2, SAP18, SMARCC2, HDAC1, SMARCC1, MBD3, SMARCA1, RUVBL1, RUVBL2, POLR3A, MSH2, S100A9, IK, SEPT2, EIF4A3, PHGDH, SEPT7, NCSTN, PRKDC, RBM14, HNRNPM, SFPQ, HNRNPR, PPP1CA, NOTCH1, RNF168, VCP, SS18, SSX2, SMARCA5, LMNA, RPA3, RPA2, RPA1, BRCA1, C17orf49, CUL7, OBSL1, CCDC8, SUZ12, EED, RNF2, BMI1, ABCE1, RBBP7, NTRK1, COPS3, INO80, IPO9, POLR1C, POLR3B, SCARNA22, IFI16, DAXX, HNRNPU, NPM1, RPL10, NLRP3, MAX, NFATC1, RBPJ, TEAD2, TP53, FOXB1, FOXC1, FOXC2, FOXE1, FOXG1, FOXJ2, FOXJ3, FOXK2, FOXL1, BEND3, FOXM1, FOXQ1, FOXR1, FOXS1, SNW1, CDC5L, NFATC2, RPL30, NCL, COX15, DLST, PDHA1, MTF1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for TBC1D9_SMARCA5


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TBC1D9_SMARCA5


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneTBC1D9C0023893Liver Cirrhosis, Experimental1CTD_human