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Fusion gene ID: 37429 |
FusionGeneSummary for TBC1D9_SMARCA5 |
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Fusion gene information | Fusion gene name: TBC1D9_SMARCA5 | Fusion gene ID: 37429 | Hgene | Tgene | Gene symbol | TBC1D9 | SMARCA5 | Gene ID | 23158 | 8467 |
Gene name | TBC1 domain family member 9 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 | |
Synonyms | GRAMD9|MDR1 | ISWI|SNF2H|WCRF135|hISWI|hSNF2H | |
Cytomap | 4q31.21 | 4q31.21 | |
Type of gene | protein-coding | protein-coding | |
Description | TBC1 domain family member 9TBC1 domain family member 9ATBC1 domain family, member 9 (with GRAM domain) | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5sucrose nonfermenting protein 2 homologsucrose nonfermenting-like 5 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q6ZT07 | O60264 | |
Ensembl transtripts involved in fusion gene | ENST00000442267, | ENST00000283131, | |
Fusion gene scores | * DoF score | 5 X 6 X 3=90 | 1 X 1 X 1=1 |
# samples | 5 | 1 | |
** MAII score | log2(5/90*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: TBC1D9 [Title/Abstract] AND SMARCA5 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | SMARCA5 | GO:0006334 | nucleosome assembly | 12972596 |
Tgene | SMARCA5 | GO:0006338 | chromatin remodeling | 9836642 |
Tgene | SMARCA5 | GO:0006352 | DNA-templated transcription, initiation | 9836642 |
Tgene | SMARCA5 | GO:0016584 | nucleosome positioning | 9836642 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-BH-A0BR-01A | TBC1D9 | chr4 | 141560240 | - | SMARCA5 | chr4 | 144438508 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000442267 | ENST00000283131 | TBC1D9 | chr4 | 141560240 | - | SMARCA5 | chr4 | 144438508 | + |
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FusionProtFeatures for TBC1D9_SMARCA5 |
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Hgene | Tgene |
TBC1D9 | SMARCA5 |
May act as a GTPase-activating protein for Rab familyprotein(s). | Helicase that possesses intrinsic ATP-dependentnucleosome-remodeling activity. Complexes containing SMARCA5 arecapable of forming ordered nucleosome arrays on chromatin; thismay require intact histone H4 tails. Also required for replicationof pericentric heterochromatin in S-phase specifically inconjunction with BAZ1A. Probably plays a role in repression ofpolI dependent transcription of the rDNA locus, through therecruitment of the SIN3/HDAC1 corepressor complex to the rDNApromoter. Essential component of the WICH complex, a chromatinremodeling complex that mobilizes nucleosomes and reconfiguresirregular chromatin to a regular nucleosomal array structure. TheWICH complex regulates the transcription of various genes, has arole in RNA polymerase I and RNA polymerase III transcription,mediates the histone H2AX phosphorylation at 'Tyr-142', and isinvolved in the maintenance of chromatin structures during DNAreplication processes. Essential component of the NoRC (nucleolarremodeling complex) complex, a complex that mediates silencing ofa fraction of rDNA by recruiting histone-modifying enzymes and DNAmethyltransferases, leading to heterochromatin formation andtranscriptional silencing. {ECO:0000269|PubMed:10880450,ECO:0000269|PubMed:11980720, ECO:0000269|PubMed:12198550,ECO:0000269|PubMed:12434153, ECO:0000269|PubMed:12972596,ECO:0000269|PubMed:15543136, ECO:0000269|PubMed:16603771}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | TBC1D9 | chr4:141560240 | chr4:144438508 | ENST00000442267 | - | 15 | 21 | 146_213 | 835 | 1267 | Domain | Note=GRAM 1 |
Hgene | TBC1D9 | chr4:141560240 | chr4:144438508 | ENST00000442267 | - | 15 | 21 | 293_361 | 835 | 1267 | Domain | Note=GRAM 2 |
Hgene | TBC1D9 | chr4:141560240 | chr4:144438508 | ENST00000442267 | - | 15 | 21 | 515_702 | 835 | 1267 | Domain | Rab-GAP TBC |
Tgene | >SMARCA5 | chr4:141560240 | chr4:144438508 | ENST00000283131 | + | 0 | 24 | 192_357 | 59 | 1053 | Domain | Helicase ATP-binding |
Tgene | >SMARCA5 | chr4:141560240 | chr4:144438508 | ENST00000283131 | + | 0 | 24 | 487_638 | 59 | 1053 | Domain | Helicase C-terminal |
Tgene | >SMARCA5 | chr4:141560240 | chr4:144438508 | ENST00000283131 | + | 0 | 24 | 840_892 | 59 | 1053 | Domain | SANT 1 |
Tgene | >SMARCA5 | chr4:141560240 | chr4:144438508 | ENST00000283131 | + | 0 | 24 | 943_1007 | 59 | 1053 | Domain | SANT 2 |
Tgene | >SMARCA5 | chr4:141560240 | chr4:144438508 | ENST00000283131 | + | 0 | 24 | 308_311 | 59 | 1053 | Motif | Note=DEAH box |
Tgene | >SMARCA5 | chr4:141560240 | chr4:144438508 | ENST00000283131 | + | 0 | 24 | 205_212 | 59 | 1053 | Nucleotide binding | ATP |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >TBC1D9 | chr4:141560240 | chr4:144438508 | ENST00000442267 | - | 15 | 21 | 886_921 | 835 | 1267 | Domain | EF-hand |
Tgene | SMARCA5 | chr4:141560240 | chr4:144438508 | ENST00000283131 | + | 0 | 24 | 7_13 | 59 | 1053 | Compositional bias | Note=Poly-Pro |
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FusionGeneSequence for TBC1D9_SMARCA5 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_TBC1D9_ENST00000442267_chr4_141560240_-_SMARCA5_ENST00000283131_chr4_144438508_+_1829aa MWVNPEEVLLANALWITERANPYFILQRRKGHAGDGGGGGGLAGLLVGTLDVVLDSSARVAPYRILYQTPDSLVYWTIACGGSRKEITEH WEWLEQNLLQTLSIFENENDITTFVRGKIQGIIAEYNKINDVKEDDDTEKFKEAIVKFHRLFGMPEEEKLVNYYSCSYWKGKVPRQGWMY LSINHLCFYSFLMGREAKLVIRWVDITQLEKNATLLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQLANIAMRQLLDNEGFEQDRSLPK LKRKSPKKVSALKRDLDARAKSERYRALFRLPKDEKLDGHTDCTLWTPFNKMHILGQMFVSTNYICFTSKEENLCSLIIPLREVTIVEKA DSSSVLPSPLSISTRNRMTFLFANLKDRDFLVQRISDFLQQTTSKIYSDKEFAGSYNSSDDEVYSRPSSLVSSSPQRSTSSDADGERQFN LNGNSVPTATQTLMTMYRRRSPEEFNPKLAKEFLKEQAWKIHFAEYGQGICMYRTEKTRELVLKGIPESMRGELWLLLSGAINEKATHPG YYEDLVEKSMGKYNLATEEIERDLHRSLPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAKEEEAFWLLVALCERM LPDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGVISTISLSWFLTLFLSVMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDK LLNCKDDGEAMTVLGRYLDSVTNKDSTLPPIPHLHSLLSDDVEPYPEVDIFRLIRTSYEKFGTIRADLIEQMRFKQRLKVIQTLEDTTKR NVVRTIVTETSFTIDELEELYALFKEIFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGR PRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQ TISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRY LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLR RIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGK MVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVV ILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFAS KESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRV SEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTN WNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQ LRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKK |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_TBC1D9_ENST00000442267_chr4_141560240_-_SMARCA5_ENST00000283131_chr4_144438508_+_5487nt ATGTGGGTGAACCCGGAGGAGGTGTTGCTGGCCAACGCGCTGTGGATCACCGAGAGGGCCAACCCATACTTCATCCTGCAGCGGAGGAAG GGCCACGCCGGCGATGGAGGCGGCGGCGGCGGACTGGCGGGCCTGCTGGTGGGTACCCTTGATGTTGTGTTGGACTCCAGCGCCCGGGTC GCTCCTTACCGAATCTTGTACCAGACTCCAGACTCCCTGGTCTACTGGACCATCGCCTGTGGTGGTTCCAGGAAAGAAATCACTGAACAC TGGGAATGGCTTGAGCAAAATCTCTTGCAGACACTCTCCATCTTTGAAAATGAGAATGATATCACCACATTTGTGAGAGGAAAAATACAG GGCATCATTGCAGAATACAACAAAATCAATGATGTAAAGGAAGATGATGACACGGAGAAGTTTAAAGAAGCCATTGTGAAATTTCATAGG CTGTTTGGGATGCCAGAGGAAGAGAAACTCGTCAACTATTACTCTTGCAGCTATTGGAAGGGGAAGGTCCCCCGTCAGGGTTGGATGTAC CTCAGCATTAACCACCTTTGCTTTTATTCTTTTCTTATGGGAAGGGAAGCGAAACTGGTCATCCGGTGGGTAGACATCACTCAGCTTGAG AAGAATGCCACCCTGCTTCTGCCTGATGTGATCAAAGTGAGCACACGGTCCAGTGAGCATTTCTTCTCTGTATTCCTCAACATCAACGAG ACCTTCAAGTTAATGGAGCAGCTTGCCAACATAGCCATGAGGCAACTCTTAGACAATGAGGGATTTGAACAAGATCGATCCCTGCCCAAA CTCAAAAGGAAATCTCCTAAAAAAGTGTCTGCTCTAAAACGTGATCTTGATGCCAGGGCAAAGAGTGAGAGATACCGTGCACTTTTCCGG CTGCCCAAAGATGAAAAATTAGATGGCCACACAGACTGCACTCTCTGGACTCCATTTAACAAAATGCACATTTTGGGGCAGATGTTTGTG TCCACAAATTACATCTGTTTTACCAGCAAGGAGGAGAACTTATGTAGCCTCATTATCCCGCTCCGTGAGGTGACAATTGTGGAAAAGGCA GACAGCTCCAGTGTGCTCCCCAGTCCCTTATCCATCAGCACCCGAAACAGGATGACCTTCCTATTTGCCAACTTGAAAGATAGAGACTTT CTAGTGCAGAGGATCTCAGATTTCCTGCAACAGACTACTTCCAAAATATATTCTGACAAGGAGTTTGCAGGAAGTTACAACAGTTCAGAT GATGAGGTGTACTCTCGACCCAGCAGCCTCGTCTCCTCCAGCCCCCAGAGAAGCACGAGCTCTGATGCTGATGGAGAGCGCCAGTTTAAC CTAAATGGCAACAGCGTCCCCACAGCCACACAGACCCTGATGACCATGTATCGGCGGCGGTCTCCCGAGGAGTTCAACCCGAAATTGGCC AAAGAGTTTCTGAAAGAGCAAGCCTGGAAGATTCACTTTGCTGAGTATGGGCAAGGGATCTGCATGTACCGCACAGAGAAAACGCGGGAG CTGGTGTTGAAGGGCATCCCGGAGAGCATGCGTGGGGAGCTCTGGCTGCTGCTGTCAGGTGCCATCAATGAGAAGGCCACACATCCTGGG TACTATGAAGACCTAGTGGAGAAGTCCATGGGGAAGTATAATCTCGCCACGGAGGAGATTGAGAGGGATTTACACCGCTCCCTTCCAGAA CACCCAGCTTTTCAGAATGAAATGGGCATTGCTGCACTAAGGAGAGTCTTAACAGCTTATGCTTTTCGAAATCCCAACATAGGGTATTGC CAGGCCATGAATATTGTCACTTCAGTGCTGCTGCTTTATGCCAAAGAGGAGGAAGCTTTCTGGCTGCTTGTGGCTTTGTGTGAGCGCATG CTCCCAGATTACTACAACACCAGAGTTGTGGGTGCACTGGTGGACCAAGGTGTCTTTGAGGAGCTAGCACGAGACTACGTCCCACAGCTG TACGACTGCATGCAAGACCTGGGCGTGATTTCCACCATCTCCCTGTCTTGGTTCCTCACACTATTTCTCAGTGTGATGCCTTTTGAGAGT GCAGTTGTGGTTGTTGACTGTTTCTTCTATGAAGGAATTAAAGTGATATTCCAGTTGGCCCTAGCTGTGCTGGATGCAAATGTGGACAAA CTGTTGAACTGCAAGGATGATGGGGAGGCCATGACCGTTTTGGGAAGGTATTTAGACAGTGTGACCAATAAAGACAGCACACTGCCTCCC ATTCCTCACCTCCACTCCTTGCTCAGCGATGATGTGGAACCTTACCCTGAGGTAGACATCTTTAGACTCATCAGAACTTCCTACGAGAAA TTCGGAACTATCCGGGCAGATTTGATTGAACAGATGAGATTCAAACAGAGACTGAAAGTGATCCAGACGCTGGAGGATACTACGAAACGC AACGTGGTACGAACCATTGTGACAGAAACTTCCTTTACCATTGATGAGCTGGAAGAACTTTATGCTCTTTTCAAGGAAATATTTGATGAT GCGTCACCTGGAAAGCAAAAGGAAATCCAAGAACCAGATCCTACCTATGAAGAAAAAATGCAAACTGACCGGGCAAATAGATTCGAGTAT TTATTAAAGCAGACAGAACTTTTTGCACATTTCATTCAACCTGCTGCTCAGAAGACTCCAACTTCACCTTTGAAGATGAAACCAGGGCGC CCACGAATAAAAAAAGATGAGAAGCAGAACTTACTATCCGTTGGCGATTACCGACACCGTAGAACAGAGCAAGAGGAGGATGAAGAGCTA TTAACAGAAAGCTCCAAAGCAACCAATGTTTGCACTCGATTTGAAGACTCTCCATCGTATGTAAAATGGGGTAAACTGAGAGATTATCAG GTCCGAGGATTAAACTGGCTCATTTCTTTGTATGAGAATGGCATCAATGGTATCCTTGCAGATGAAATGGGCCTAGGAAAGACTCTTCAA ACAATTTCTCTTCTTGGGTACATGAAACATTATAGAAACATTCCTGGGCCTCATATGGTTTTGGTTCCTAAGTCTACATTACACAACTGG ATGAGTGAATTCAAGAGATGGGTACCAACACTTAGATCTGTTTGTTTGATAGGAGATAAAGAACAAAGAGCTGCTTTTGTCAGAGACGTT TTATTACCGGGAGAATGGGATGTATGTGTAACATCTTATGAAATGCTTATTAAAGAGAAGTCTGTGTTCAAAAAATTTAATTGGAGATAC TTAGTAATAGATGAAGCTCACAGGATCAAAAATGAAAAATCTAAGTTGTCAGAAATAGTGAGGGAATTCAAGACTACAAATAGACTATTA TTAACTGGAACACCTCTTCAGAACAACTTGCATGAGCTGTGGTCACTTCTTAACTTTCTGTTGCCAGATGTGTTTAATTCAGCAGATGAC TTTGATTCCTGGTTTGATACAAACAACTGCCTTGGGGATCAAAAACTAGTTGAGAGGCTTCATATGGTTTTGCGTCCATTCCTCCTTCGT CGAATTAAGGCTGATGTTGAAAAGAGTTTGCCTCCAAAGAAGGAAGTAAAAATCTATGTGGGCCTCAGCAAAATGCAAAGGGAATGGTAT ACTCGGATATTAATGAAGGATATAGATATACTCAACTCAGCAGGCAAGATGGACAAAATGAGGTTATTGAACATCCTAATGCAGTTGAGA AAATGTTGTAATCATCCATATCTCTTTGATGGAGCAGAACCTGGTCCACCTTATACAACAGATATGCATCTAGTAACCAACAGTGGCAAA ATGGTGGTTTTAGACAAGCTGCTCCCTAAGTTAAAAGAACAAGGTTCACGAGTACTAATCTTCAGTCAAATGACAAGGGTATTGGACATT TTGGAAGATTATTGCATGTGGAGAAATTATGAGTACTGCAGGTTGGATGGTCAGACACCCCATGATGAGAGACAAGACTCCATCAATGCA TACAATGAACCAAACAGCACAAAGTTTGTTTTCATGTTAAGCACGCGTGCTGGTGGTCTTGGCATCAATCTTGCGACTGCTGATGTAGTA ATTTTGTATGATTCTGATTGGAATCCCCAAGTAGATCTTCAGGCTATGGACCGAGCACATAGAATTGGGCAGACTAAGACAGTCAGAGTG TTCCGCTTTATAACTGATAACACTGTAGAAGAAAGAATAGTAGAACGTGCTGAGATGAAACTCAGACTGGATTCAATAGTCATTCAACAA GGGAGGCTTGTGGATCAGAATCTGAACAAAATTGGGAAAGATGAAATGCTTCAAATGATTAGACATGGAGCAACACATGTGTTTGCTTCA AAGGAAAGTGAGATCACTGATGAAGATATCGATGGTATTTTGGAAAGAGGTGCAAAGAAGACTGCAGAGATGAATGAAAAGCTCTCCAAG ATGGGCGAAAGTTCACTTAGAAACTTTACAATGGATACAGAGTCAAGTGTTTATAACTTCGAAGGAGAAGACTATAGAGAAAAACAAAAG ATTGCATTCACAGAGTGGATTGAACCACCTAAACGAGAAAGAAAAGCCAACTATGCCGTTGATGCATATTTCAGGGAAGCTCTTCGTGTT AGTGAACCTAAAGCACCCAAGGCTCCTCGACCTCCAAAACAACCCAATGTTCAGGATTTCCAGTTCTTTCCTCCACGTTTATTTGAATTA CTGGAAAAAGAAATTCTGTTTTACAGAAAAACTATTGGGTACAAGGTACCTCGAAATCCTGAGCTGCCTAATGCAGCACAGGCACAAAAA GAAGAACAGCTTAAAATTGATGAAGCTGAATCCCTTAATGATGAAGAGTTAGAGGAAAAAGAGAAGCTTCTAACACAGGGATTTACCAAT TGGAATAAGAGAGATTTTAACCAGTTTATCAAAGCTAATGAGAAGTGGGGTCGTGATGATATTGAAAATATAGCAAGAGAAGTAGAAGGC AAAACTCCAGAAGAAGTCATTGAATATTCAGCTGTGTTTTGGGAAAGGTGCAACGAGCTCCAGGACATAGAGAAGATTATGGCTCAGATT GAAAGGGGAGAGGCGAGAATTCAAAGAAGAATAAGCATCAAGAAAGCACTTGACACAAAGATTGGACGGTACAAAGCACCTTTTCATCAG CTGAGAATATCATATGGTACTAACAAAGGAAAAAACTATACTGAAGAAGAAGATCGTTTTCTGATTTGTATGCTTCACAAACTTGGATTT GACAAAGAAAATGTTTATGATGAATTGCGACAGTGTATTCGCAACTCTCCTCAGTTCAGATTTGACTGGTTTCTTAAGTCCAGAACTGCA ATGGAGCTCCAGAGGAGATGTAATACCTTAATTACTTTGATTGAAAGAGAAAACATGGAACTAGAAGAAAAGGAGAAGGCAGAGAAAAAG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_TBC1D9_ENST00000442267_chr4_141560240_-_SMARCA5_ENST00000283131_chr4_144438508_+_9864nt GCGCGCCTGTCGCGGTGGTGGGTGCAGGACTGGACCCACGGGCCCATTGTGCGCCCGCCCGCGGCAGCCAGGACCATGTGGGTGAACCCG GAGGAGGTGTTGCTGGCCAACGCGCTGTGGATCACCGAGAGGGCCAACCCATACTTCATCCTGCAGCGGAGGAAGGGCCACGCCGGCGAT GGAGGCGGCGGCGGCGGACTGGCGGGCCTGCTGGTGGGTACCCTTGATGTTGTGTTGGACTCCAGCGCCCGGGTCGCTCCTTACCGAATC TTGTACCAGACTCCAGACTCCCTGGTCTACTGGACCATCGCCTGTGGTGGTTCCAGGAAAGAAATCACTGAACACTGGGAATGGCTTGAG CAAAATCTCTTGCAGACACTCTCCATCTTTGAAAATGAGAATGATATCACCACATTTGTGAGAGGAAAAATACAGGGCATCATTGCAGAA TACAACAAAATCAATGATGTAAAGGAAGATGATGACACGGAGAAGTTTAAAGAAGCCATTGTGAAATTTCATAGGCTGTTTGGGATGCCA GAGGAAGAGAAACTCGTCAACTATTACTCTTGCAGCTATTGGAAGGGGAAGGTCCCCCGTCAGGGTTGGATGTACCTCAGCATTAACCAC CTTTGCTTTTATTCTTTTCTTATGGGAAGGGAAGCGAAACTGGTCATCCGGTGGGTAGACATCACTCAGCTTGAGAAGAATGCCACCCTG CTTCTGCCTGATGTGATCAAAGTGAGCACACGGTCCAGTGAGCATTTCTTCTCTGTATTCCTCAACATCAACGAGACCTTCAAGTTAATG GAGCAGCTTGCCAACATAGCCATGAGGCAACTCTTAGACAATGAGGGATTTGAACAAGATCGATCCCTGCCCAAACTCAAAAGGAAATCT CCTAAAAAAGTGTCTGCTCTAAAACGTGATCTTGATGCCAGGGCAAAGAGTGAGAGATACCGTGCACTTTTCCGGCTGCCCAAAGATGAA AAATTAGATGGCCACACAGACTGCACTCTCTGGACTCCATTTAACAAAATGCACATTTTGGGGCAGATGTTTGTGTCCACAAATTACATC TGTTTTACCAGCAAGGAGGAGAACTTATGTAGCCTCATTATCCCGCTCCGTGAGGTGACAATTGTGGAAAAGGCAGACAGCTCCAGTGTG CTCCCCAGTCCCTTATCCATCAGCACCCGAAACAGGATGACCTTCCTATTTGCCAACTTGAAAGATAGAGACTTTCTAGTGCAGAGGATC TCAGATTTCCTGCAACAGACTACTTCCAAAATATATTCTGACAAGGAGTTTGCAGGAAGTTACAACAGTTCAGATGATGAGGTGTACTCT CGACCCAGCAGCCTCGTCTCCTCCAGCCCCCAGAGAAGCACGAGCTCTGATGCTGATGGAGAGCGCCAGTTTAACCTAAATGGCAACAGC GTCCCCACAGCCACACAGACCCTGATGACCATGTATCGGCGGCGGTCTCCCGAGGAGTTCAACCCGAAATTGGCCAAAGAGTTTCTGAAA GAGCAAGCCTGGAAGATTCACTTTGCTGAGTATGGGCAAGGGATCTGCATGTACCGCACAGAGAAAACGCGGGAGCTGGTGTTGAAGGGC ATCCCGGAGAGCATGCGTGGGGAGCTCTGGCTGCTGCTGTCAGGTGCCATCAATGAGAAGGCCACACATCCTGGGTACTATGAAGACCTA GTGGAGAAGTCCATGGGGAAGTATAATCTCGCCACGGAGGAGATTGAGAGGGATTTACACCGCTCCCTTCCAGAACACCCAGCTTTTCAG AATGAAATGGGCATTGCTGCACTAAGGAGAGTCTTAACAGCTTATGCTTTTCGAAATCCCAACATAGGGTATTGCCAGGCCATGAATATT GTCACTTCAGTGCTGCTGCTTTATGCCAAAGAGGAGGAAGCTTTCTGGCTGCTTGTGGCTTTGTGTGAGCGCATGCTCCCAGATTACTAC AACACCAGAGTTGTGGGTGCACTGGTGGACCAAGGTGTCTTTGAGGAGCTAGCACGAGACTACGTCCCACAGCTGTACGACTGCATGCAA GACCTGGGCGTGATTTCCACCATCTCCCTGTCTTGGTTCCTCACACTATTTCTCAGTGTGATGCCTTTTGAGAGTGCAGTTGTGGTTGTT GACTGTTTCTTCTATGAAGGAATTAAAGTGATATTCCAGTTGGCCCTAGCTGTGCTGGATGCAAATGTGGACAAACTGTTGAACTGCAAG GATGATGGGGAGGCCATGACCGTTTTGGGAAGGTATTTAGACAGTGTGACCAATAAAGACAGCACACTGCCTCCCATTCCTCACCTCCAC TCCTTGCTCAGCGATGATGTGGAACCTTACCCTGAGGTAGACATCTTTAGACTCATCAGAACTTCCTACGAGAAATTCGGAACTATCCGG GCAGATTTGATTGAACAGATGAGATTCAAACAGAGACTGAAAGTGATCCAGACGCTGGAGGATACTACGAAACGCAACGTGGTACGAACC ATTGTGACAGAAACTTCCTTTACCATTGATGAGCTGGAAGAACTTTATGCTCTTTTCAAGGAAATATTTGATGATGCGTCACCTGGAAAG CAAAAGGAAATCCAAGAACCAGATCCTACCTATGAAGAAAAAATGCAAACTGACCGGGCAAATAGATTCGAGTATTTATTAAAGCAGACA GAACTTTTTGCACATTTCATTCAACCTGCTGCTCAGAAGACTCCAACTTCACCTTTGAAGATGAAACCAGGGCGCCCACGAATAAAAAAA GATGAGAAGCAGAACTTACTATCCGTTGGCGATTACCGACACCGTAGAACAGAGCAAGAGGAGGATGAAGAGCTATTAACAGAAAGCTCC AAAGCAACCAATGTTTGCACTCGATTTGAAGACTCTCCATCGTATGTAAAATGGGGTAAACTGAGAGATTATCAGGTCCGAGGATTAAAC TGGCTCATTTCTTTGTATGAGAATGGCATCAATGGTATCCTTGCAGATGAAATGGGCCTAGGAAAGACTCTTCAAACAATTTCTCTTCTT GGGTACATGAAACATTATAGAAACATTCCTGGGCCTCATATGGTTTTGGTTCCTAAGTCTACATTACACAACTGGATGAGTGAATTCAAG AGATGGGTACCAACACTTAGATCTGTTTGTTTGATAGGAGATAAAGAACAAAGAGCTGCTTTTGTCAGAGACGTTTTATTACCGGGAGAA TGGGATGTATGTGTAACATCTTATGAAATGCTTATTAAAGAGAAGTCTGTGTTCAAAAAATTTAATTGGAGATACTTAGTAATAGATGAA GCTCACAGGATCAAAAATGAAAAATCTAAGTTGTCAGAAATAGTGAGGGAATTCAAGACTACAAATAGACTATTATTAACTGGAACACCT CTTCAGAACAACTTGCATGAGCTGTGGTCACTTCTTAACTTTCTGTTGCCAGATGTGTTTAATTCAGCAGATGACTTTGATTCCTGGTTT GATACAAACAACTGCCTTGGGGATCAAAAACTAGTTGAGAGGCTTCATATGGTTTTGCGTCCATTCCTCCTTCGTCGAATTAAGGCTGAT GTTGAAAAGAGTTTGCCTCCAAAGAAGGAAGTAAAAATCTATGTGGGCCTCAGCAAAATGCAAAGGGAATGGTATACTCGGATATTAATG AAGGATATAGATATACTCAACTCAGCAGGCAAGATGGACAAAATGAGGTTATTGAACATCCTAATGCAGTTGAGAAAATGTTGTAATCAT CCATATCTCTTTGATGGAGCAGAACCTGGTCCACCTTATACAACAGATATGCATCTAGTAACCAACAGTGGCAAAATGGTGGTTTTAGAC AAGCTGCTCCCTAAGTTAAAAGAACAAGGTTCACGAGTACTAATCTTCAGTCAAATGACAAGGGTATTGGACATTTTGGAAGATTATTGC ATGTGGAGAAATTATGAGTACTGCAGGTTGGATGGTCAGACACCCCATGATGAGAGACAAGACTCCATCAATGCATACAATGAACCAAAC AGCACAAAGTTTGTTTTCATGTTAAGCACGCGTGCTGGTGGTCTTGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATGATTCT GATTGGAATCCCCAAGTAGATCTTCAGGCTATGGACCGAGCACATAGAATTGGGCAGACTAAGACAGTCAGAGTGTTCCGCTTTATAACT GATAACACTGTAGAAGAAAGAATAGTAGAACGTGCTGAGATGAAACTCAGACTGGATTCAATAGTCATTCAACAAGGGAGGCTTGTGGAT CAGAATCTGAACAAAATTGGGAAAGATGAAATGCTTCAAATGATTAGACATGGAGCAACACATGTGTTTGCTTCAAAGGAAAGTGAGATC ACTGATGAAGATATCGATGGTATTTTGGAAAGAGGTGCAAAGAAGACTGCAGAGATGAATGAAAAGCTCTCCAAGATGGGCGAAAGTTCA CTTAGAAACTTTACAATGGATACAGAGTCAAGTGTTTATAACTTCGAAGGAGAAGACTATAGAGAAAAACAAAAGATTGCATTCACAGAG TGGATTGAACCACCTAAACGAGAAAGAAAAGCCAACTATGCCGTTGATGCATATTTCAGGGAAGCTCTTCGTGTTAGTGAACCTAAAGCA CCCAAGGCTCCTCGACCTCCAAAACAACCCAATGTTCAGGATTTCCAGTTCTTTCCTCCACGTTTATTTGAATTACTGGAAAAAGAAATT CTGTTTTACAGAAAAACTATTGGGTACAAGGTACCTCGAAATCCTGAGCTGCCTAATGCAGCACAGGCACAAAAAGAAGAACAGCTTAAA ATTGATGAAGCTGAATCCCTTAATGATGAAGAGTTAGAGGAAAAAGAGAAGCTTCTAACACAGGGATTTACCAATTGGAATAAGAGAGAT TTTAACCAGTTTATCAAAGCTAATGAGAAGTGGGGTCGTGATGATATTGAAAATATAGCAAGAGAAGTAGAAGGCAAAACTCCAGAAGAA GTCATTGAATATTCAGCTGTGTTTTGGGAAAGGTGCAACGAGCTCCAGGACATAGAGAAGATTATGGCTCAGATTGAAAGGGGAGAGGCG AGAATTCAAAGAAGAATAAGCATCAAGAAAGCACTTGACACAAAGATTGGACGGTACAAAGCACCTTTTCATCAGCTGAGAATATCATAT GGTACTAACAAAGGAAAAAACTATACTGAAGAAGAAGATCGTTTTCTGATTTGTATGCTTCACAAACTTGGATTTGACAAAGAAAATGTT TATGATGAATTGCGACAGTGTATTCGCAACTCTCCTCAGTTCAGATTTGACTGGTTTCTTAAGTCCAGAACTGCAATGGAGCTCCAGAGG AGATGTAATACCTTAATTACTTTGATTGAAAGAGAAAACATGGAACTAGAAGAAAAGGAGAAGGCAGAGAAAAAGAAACGAGGACCAAAG CCTTCAACACAGAAACGTAAAATGGATGGCGCACCTGATGGTCGAGGAAGAAAAAAGAAGCTGAAACTATGAATATGTTTTTGTTTCATA ATCACTAACTTTAAACCAGTAGTTCTTTAATTTACGGGTCTTCATAAGATGTACTGTACAATGCTCAATTGTTATGTCATTTAAAGACAT CAGGTTCATCTGTTTACTGAGCTAGAAACATAGTATGTAGTTTCACTTTTTTAAATGCAACAGCTGTGCTGAAATTTTTTTATCATTAAC ACTTGAAGTAATAAAATAGGCTTCATTTATTACTAAGTGTTTCATTTGATTTATTTTTCTATTGTAGTTCCATTTGTGAAGATTGTGACT TTTTGTTTATTAGCTATAATTTCTACACTTGTAAGGCTTAAAAACAAGTTAAAAAGAAAATTGCAAATAACATTTGTCCCTTTCAGTCTT CACCTAGTTGTGTAATTATTTTAATTCACTTTGCCTTTGCAGAAATTTGGGTATTTTCTTTGTAGTGCTATTGAGTCTCATCTGGAAAGA TTATATAAATTGCATTCTCCTTGCTTATGTGGGTAGAATGGGAAAAGAAGGCAAGACAAAGTATACTTAAATTCTATGCATATTTCTGTT ATGCTTTCTGTTTTTTTTAGTTGATTCTGAAATGAATATGCCCTATTCTTTTGAAAGAATGGCCTTTTAGTTGTATAGCCAAAGACATTT AGTATTTTCCGGTTCCTTAAGGTATTACTGTACCATTTTGTAAAAGGAATATTATTATTATTATTTTTAATTATTTGGTAAATATTTTGT CATATGACCTTCTGAAGCAGCCACAACTTAGATAATGTCAGAACTAAGGTGATTTTTTTTTTTTAATTTTGAAAGCCCAGCCAAAATGAG GTGTGAATTTGTCATACTGTTACATTGAAATTGGTAACAAAATATATCCCCTCCCATTTGGACTTTTAGGGTAAATGAAAATTTTATTGT ATTTTAAAGTAGTTTCTAAGTGTTAGCAAGACTGACTATAATTCCAGTTTCTGTTTTCTATGGACAGACCTGATAAACTGGAGACCCTAA AGCAGGAATACCCAAATTATAGTGTCAGGATTTTAGCTGTACCAGAGGCCTTTATGTGCTACACATAATTTGTATAAAATTTTATATGTG CAGATTGGGTACATAAACAGTTCTCCATTTTTCTAAGGGAATGCAATAAATGTAGCATCGTGAATAAATATAACTTTTATAATCCGTAAA GTGGTCTTTTCTTTCCATTTCTTTAATTGTTTTCTCAATTTTTATTCACTTTTTCCTTTAGGACACATTTCCCTTAATTGGATATCTTTC CCTTAAATTTCTATTAGTAGTTGTTTTCATCTGCCCACATGTAATTGAAGATTTAAAAAAAAAATTTTGATACCTGCAGTATTACTAATA CTGCTTAATTTCTTGAAATGTGGAATTGCTGCTGTTAATGTCAAGCAAAACGCAGTATTTATGGCAAATTGTAAAGTAATTTGAATTTAG TGCTACCTCAAAATTAACTTTTTAAATACTATGTTAGATTCTTAACAGTTAAAGGTCTAATACATGCATGAGGAATGGTTACTTATGAAA GGAAAAAGAATTTGTAAGAGTTATCACCTCAGTTTGGAAGAAATTGAAAAAATGTAAGGCTGAAGAAAACTTACGGAGGTCACAAAAGTG ATGTTTTCAAGAGGAGGAGAAACTGGGAGGGAGATACACAGTGGAAATGCAAAATGAATCAAGTATAGTGGTAGCCCTGAGAGCTTAGGG ACTCAAATGGAAACTGTGTGAAGGGAAACTCACTTGAAAAAAAAGCATGAACCAGCTAGGCCCTGCCACCACTGTGTTTGGCCAAGTTCA CAAATCTGTTTTAACCTGTCACTTCCCTGTCACTTCTCTGGCTTTCCTCTCCCGCTAAGCTTTTGTTTCCTGGCAGTAATTAAAATCTTC TGTCAGTGCCACAGCTACTACTGCTACTGGAACTGCCTTAACCACTACTGCTACTGGAACTGCCTTAGCCACCTTGGTATCGTGGTTTGG CAAAGTATTGGCCTCTACCACCATAGGGCCCAGAGCTTCTGCCTCCAAAGTTTCCTCCCTTCATGGGTCCAAAATTTGAAGACTGATTGT TGTCATTGCCAAAATCATTGTAGCTTTTACCACCTCCAAAATTGCTTCAATCATTACCAAATCTATTATAGCAATCCCCACTGCCACCAT ATCCATCACCACCACCATGGCTGCCACCAAAGCCACCACGATCACAGAACTTGATGACTGTATTTGTGACTAATTGTATAATAGTTTCTG TTCTGTGGAAAGTAAAGCATTCCAACACAGGGTTTCAGTGTAGATTGTTTTGTTTTGTACCCATGCTGTTGATTGCTAAATGTTTTAATA ATCTGATCATGATACTGAATAAATGTCTTTTTTTTTTTTTAACAACAAAGCATGAAAGATTGCTTAATTGTACATCTGACAAAGTGCTGG AGGCTATTATAAAGTGTAATTATTACTACTTTTAAGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCACAGCT CACTGCAACCTCAAACTTCAGGGCTCAAGTGATCCTCCCACCTCAGCTTCCCAAGTAGCTAGGACTACAGATACCACGCCCAGCTAAGTT TTTTTAGTTTTTGTAGAGATAGGGCCTTGCTATGTTGCCCAGTCCGGTCTCAAACGCCGACTTCAGGCAATCCTCTTGCGTCAACCTCTC AAAGTGCTGGGATTACATGTGTAAGCCTACATTCCAAAGTGCTGGGATCATAGTTGTGAGCCTACACCACACCTGGCCTACATTTTGTTT TTCATAAAGTTGAGAGAAGCAAATCCTAAGCATAGAGTACAAGTTGAGCATCCCTAATCAAAAAATCTAAAATCAGAAATGCTCCATAAT TTGAATGCTCATTAGGGCATTTCTGATTTTTGGATTAGGGATGCTGAACTGATAAGTATAATGCAAGTATTCTAAAGTCTGGAAAATGCT AAAAACACTTCTGGTTCCAGGCATTTCAGATAAGGATTGCTCCATCTGCCCTTTGAGTATTTAATATATGCCGATTGTTTGAACTAATCT GGATTTAATTATATAAATGATTATATAAATGATCTTTGGCTTAGTACCTTTCTTAATCTCGATCTTAAAAAGCATTGTAAAACACCCCTG TGGTTTTTCAGAAAAATTCTGAGTAAAAAATAAATTTCATCTTGTTCTATCCCTTTGAATCTAAAAAACAAATCTTTTTGAAAGGATGTG CTACTATATTTCAAACCAGTAGTTTTGGAGTAGAACATTGCTAAAAAAATGGGTACTAAGGAGGGTAATTTAAACAAAGTAGATTAATGA CACAAGGTGGATTGATGAACTCATAAATCCAAATGAATGGAATGCTAGAAGACATGTATTAACGGAGTAGCTGTTACCAAAATATATACA TATTTTGTATATGTACATAGCTGTTACCAAAATGTATCTTTGCCTGTTGGAATCTGATGTCAAGATCAAAGGTGAGGGCATCCCTCAGAT GACAGATAATGGGCAAAATACATTCTTGGTGTGGAGCAGTGCTGCAGAATTAACTTCGCTGTGTACATCCCAGAATCGTTTTGGATCTGT TAAGGTTTTTATTAGAATGATTAAATAGGCTTTTGCAGCATTAACTTTACAGTAGTTACCAGAAAAGACTATGCTACAAGAACCAAAATT GAAGTAAGAAGAAAAAGACTGAAATGATATGATTCTAAATGAAAAAAATGAAGAAGTGGAATAGTTTCTCCACAGGCATAAGAGGCAAAG CATTGTTTCAGAAGTGGACTGGCACCTCACCTGAGATACTCAAGACTGGCAACATGGGTCTACATTCTTTGTTACCACAGATTCCCTTGT GTCCGGAGAGATTCCCTAGCTCTAATGACAGCTTTTTTGGGGGGTAATGAGGCTATGAGAAGATTGAGGATCTAGGTACTTGCCTTTAAC TCTACAGCATACAAGGTGTGTGGCTCTTATCTCTAGGACACCAATATTTAATGTTGCATATCATGTATCTCCAGTACAAGAAGAAAGTTT ATCAGAATTTAGTTAATGTTGGAAACTTTGTAATATAAACAATGTAAACACTACATTGACAAAAATATTTTATTAATACAAAGAATATGC ATATAGTTTGCTTACTACAGAAATTCTTGTTTTTGATGTAGACAACCCAAAGGAGTTTTTATGTATATAGATTGTGAATAAATTGGGAAA |
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FusionGenePPI for TBC1D9_SMARCA5 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TBC1D9 | MAP1LC3B, GABARAPL2, MAP1LC3A, GABARAPL1, LANCL1, PRICKLE3, SRSF2, SNRPE, SSB, YME1L1, DDX41, PRPF38B, ABHD16A, TBC1D9B, TMEM55A, MRS2, CPT1A, EPHA1, MUL1 | SMARCA5 | DNMT3B, BAZ2A, BAZ1A, POLE3, CHRAC1, BAZ1B, SATB1, RAD21, HDAC2, RBBP4, CHD3, SMC1A, SMC3, CDT1, CTNNB1, HIST1H4A, MAF, CREB1, MYO1C, SIN3A, RSF1, MCM3, HIST2H2AB, HIST1H3A, DNMT1, CENPA, USF1, XRCC5, MYC, SMARCAD1, SOX2, CECR2, UBTF, POLR1A, MYBBP1A, HDGF, CEBPB, CUL5, CDK2, SAP18, SMARCC2, HDAC1, SMARCC1, MBD3, SMARCA1, RUVBL1, RUVBL2, POLR3A, MSH2, S100A9, IK, SEPT2, EIF4A3, PHGDH, SEPT7, NCSTN, PRKDC, RBM14, HNRNPM, SFPQ, HNRNPR, PPP1CA, NOTCH1, RNF168, VCP, SS18, SSX2, SMARCA5, LMNA, RPA3, RPA2, RPA1, BRCA1, C17orf49, CUL7, OBSL1, CCDC8, SUZ12, EED, RNF2, BMI1, ABCE1, RBBP7, NTRK1, COPS3, INO80, IPO9, POLR1C, POLR3B, SCARNA22, IFI16, DAXX, HNRNPU, NPM1, RPL10, NLRP3, MAX, NFATC1, RBPJ, TEAD2, TP53, FOXB1, FOXC1, FOXC2, FOXE1, FOXG1, FOXJ2, FOXJ3, FOXK2, FOXL1, BEND3, FOXM1, FOXQ1, FOXR1, FOXS1, SNW1, CDC5L, NFATC2, RPL30, NCL, COX15, DLST, PDHA1, MTF1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TBC1D9_SMARCA5 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TBC1D9_SMARCA5 |
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Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TBC1D9 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |