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Fusion gene ID: 37136 |
FusionGeneSummary for TAF9_ADAMTS6 |
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Fusion gene information | Fusion gene name: TAF9_ADAMTS6 | Fusion gene ID: 37136 | Hgene | Tgene | Gene symbol | TAF9 | ADAMTS6 | Gene ID | 6880 | 11174 |
Gene name | TATA-box binding protein associated factor 9 | ADAM metallopeptidase with thrombospondin type 1 motif 6 | |
Synonyms | MGC:5067|STAF31/32|TAF2G|TAFII-31|TAFII-32|TAFII31|TAFII32|TAFIID32 | ADAM-TS 6|ADAM-TS6|ADAMTS-6 | |
Cytomap | 5q13.2 | 5q12.3 | |
Type of gene | protein-coding | protein-coding | |
Description | transcription initiation factor TFIID subunit 9RNA polymerase II TBP-associated factor subunit GTAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDatranscription initiation factor TFIID 31 kD subunittranscription initiation | A disintegrin and metalloproteinase with thrombospondin motifs 6a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6 | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | Q16594 | Q9UKP5 | |
Ensembl transtripts involved in fusion gene | ENST00000380822, ENST00000502819, ENST00000380818, ENST00000512561, ENST00000506736, ENST00000328663, ENST00000217893, | ENST00000314351, ENST00000536360, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
# samples | 1 | 1 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: TAF9 [Title/Abstract] AND ADAMTS6 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | TAF9 | GO:0000492 | box C/D snoRNP assembly | 17636026 |
Hgene | TAF9 | GO:0032435 | negative regulation of proteasomal ubiquitin-dependent protein catabolic process | 11278372 |
Hgene | TAF9 | GO:0043966 | histone H3 acetylation | 9674425|11564863 |
Hgene | TAF9 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 11278372 |
Hgene | TAF9 | GO:0050821 | protein stabilization | 15899866 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LUAD | TCGA-44-6147-01A | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000380822 | ENST00000314351 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5CDS-intron | ENST00000380822 | ENST00000536360 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5UTR-intron | ENST00000502819 | ENST00000314351 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5UTR-intron | ENST00000502819 | ENST00000536360 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5CDS-intron | ENST00000380818 | ENST00000314351 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5CDS-intron | ENST00000380818 | ENST00000536360 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
intron-intron | ENST00000512561 | ENST00000314351 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
intron-intron | ENST00000512561 | ENST00000536360 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5UTR-intron | ENST00000506736 | ENST00000314351 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5UTR-intron | ENST00000506736 | ENST00000536360 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5UTR-intron | ENST00000328663 | ENST00000314351 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5UTR-intron | ENST00000328663 | ENST00000536360 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5UTR-intron | ENST00000217893 | ENST00000314351 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
5UTR-intron | ENST00000217893 | ENST00000536360 | TAF9 | chr5 | 68662330 | - | ADAMTS6 | chr5 | 64625310 | - |
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FusionProtFeatures for TAF9_ADAMTS6 |
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Hgene | Tgene |
TAF9 | ADAMTS6 |
Essential for cell viability. TAF9 and TAF9B areinvolved in transcriptional activation as well as repression ofdistinct but overlapping sets of genes. May have a role in generegulation associated with apoptosis. TAFs are components of thetranscription factor IID (TFIID) complex, the TBP-free TAFIIcomplex (TFTC), the PCAF histone acetylase complex and the STAGAtranscription coactivator-HAT complex. TFIID or TFTC are essentialfor the regulation of RNA polymerase II-mediated transcription.{ECO:0000269|PubMed:15899866}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TAF9_ADAMTS6 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TAF9_ADAMTS6 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
TAF9 | RPS14, DRAP1, MYC, RBM48, EEF1A1, TBP, TAF5, TP53, SUPT3H, TRRAP, TAF6L, TAF5L, TADA3, SF3B3, KAT2A, SUPT7L, TAF10, TAF12, TAF1, TAF2, TAF4, TAF6, TAF7, TADA1, USP22, TAF13, SIN3A, SMARCA2, ATXN7, RELA, NCOR1, GTF2B, NR1D2, KLF6, NUFIP1, RUVBL2, RUVBL1, FBL, TAF8, CEBPB, ELF3, HSF1, NFATC2, COIL, KPNA1, KPNA6, RNF138, UBA1, CIITA, APP, TAF9B, TAF1L, DHX8, FKBP4, AHR, HIST3H3, KAT2B, MED26, HNF4A, FBLN1, GALNT6, FEZ1, RPS24, TBCA, ANK2, NCOA2, NDRG1, LAMTOR5, TADA2B, ATXN7L3, ALDH3B1, CHD2, ELP2, KMT2A, CD14, LLGL2, AURKA, KIAA1107, YIPF5, FOXL1, FBXW7, FOXS1, TAF7L, TFEB, TRPC5, MYCL, TAF11 | ADAMTS6 | SNTA1, RNF2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TAF9_ADAMTS6 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TAF9_ADAMTS6 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | TAF9 | C0019693 | HIV Infections | 1 | CTD_human |