FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 37136

FusionGeneSummary for TAF9_ADAMTS6

check button Fusion gene summary
Fusion gene informationFusion gene name: TAF9_ADAMTS6
Fusion gene ID: 37136
HgeneTgene
Gene symbol

TAF9

ADAMTS6

Gene ID

6880

11174

Gene nameTATA-box binding protein associated factor 9ADAM metallopeptidase with thrombospondin type 1 motif 6
SynonymsMGC:5067|STAF31/32|TAF2G|TAFII-31|TAFII-32|TAFII31|TAFII32|TAFIID32ADAM-TS 6|ADAM-TS6|ADAMTS-6
Cytomap

5q13.2

5q12.3

Type of geneprotein-codingprotein-coding
Descriptiontranscription initiation factor TFIID subunit 9RNA polymerase II TBP-associated factor subunit GTAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDatranscription initiation factor TFIID 31 kD subunittranscription initiation A disintegrin and metalloproteinase with thrombospondin motifs 6a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6
Modification date2018052320180522
UniProtAcc

Q16594

Q9UKP5

Ensembl transtripts involved in fusion geneENST00000380822, ENST00000502819, 
ENST00000380818, ENST00000512561, 
ENST00000506736, ENST00000328663, 
ENST00000217893, 
ENST00000314351, 
ENST00000536360, 
Fusion gene scores* DoF score1 X 1 X 1=11 X 1 X 1=1
# samples 11
** MAII scorelog2(1/1*10)=3.32192809488736log2(1/1*10)=3.32192809488736
Context

PubMed: TAF9 [Title/Abstract] AND ADAMTS6 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneTAF9

GO:0000492

box C/D snoRNP assembly

17636026

HgeneTAF9

GO:0032435

negative regulation of proteasomal ubiquitin-dependent protein catabolic process

11278372

HgeneTAF9

GO:0043966

histone H3 acetylation

9674425|11564863

HgeneTAF9

GO:0045944

positive regulation of transcription by RNA polymerase II

11278372

HgeneTAF9

GO:0050821

protein stabilization

15899866


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVLUADTCGA-44-6147-01ATAF9chr5

68662330

-ADAMTS6chr5

64625310

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000380822ENST00000314351TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5CDS-intronENST00000380822ENST00000536360TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5UTR-intronENST00000502819ENST00000314351TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5UTR-intronENST00000502819ENST00000536360TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5CDS-intronENST00000380818ENST00000314351TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5CDS-intronENST00000380818ENST00000536360TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
intron-intronENST00000512561ENST00000314351TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
intron-intronENST00000512561ENST00000536360TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5UTR-intronENST00000506736ENST00000314351TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5UTR-intronENST00000506736ENST00000536360TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5UTR-intronENST00000328663ENST00000314351TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5UTR-intronENST00000328663ENST00000536360TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5UTR-intronENST00000217893ENST00000314351TAF9chr5

68662330

-ADAMTS6chr5

64625310

-
5UTR-intronENST00000217893ENST00000536360TAF9chr5

68662330

-ADAMTS6chr5

64625310

-

Top

FusionProtFeatures for TAF9_ADAMTS6


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
TAF9

Q16594

ADAMTS6

Q9UKP5

Essential for cell viability. TAF9 and TAF9B areinvolved in transcriptional activation as well as repression ofdistinct but overlapping sets of genes. May have a role in generegulation associated with apoptosis. TAFs are components of thetranscription factor IID (TFIID) complex, the TBP-free TAFIIcomplex (TFTC), the PCAF histone acetylase complex and the STAGAtranscription coactivator-HAT complex. TFIID or TFTC are essentialfor the regulation of RNA polymerase II-mediated transcription.{ECO:0000269|PubMed:15899866}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for TAF9_ADAMTS6


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for TAF9_ADAMTS6


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
TAF9RPS14, DRAP1, MYC, RBM48, EEF1A1, TBP, TAF5, TP53, SUPT3H, TRRAP, TAF6L, TAF5L, TADA3, SF3B3, KAT2A, SUPT7L, TAF10, TAF12, TAF1, TAF2, TAF4, TAF6, TAF7, TADA1, USP22, TAF13, SIN3A, SMARCA2, ATXN7, RELA, NCOR1, GTF2B, NR1D2, KLF6, NUFIP1, RUVBL2, RUVBL1, FBL, TAF8, CEBPB, ELF3, HSF1, NFATC2, COIL, KPNA1, KPNA6, RNF138, UBA1, CIITA, APP, TAF9B, TAF1L, DHX8, FKBP4, AHR, HIST3H3, KAT2B, MED26, HNF4A, FBLN1, GALNT6, FEZ1, RPS24, TBCA, ANK2, NCOA2, NDRG1, LAMTOR5, TADA2B, ATXN7L3, ALDH3B1, CHD2, ELP2, KMT2A, CD14, LLGL2, AURKA, KIAA1107, YIPF5, FOXL1, FBXW7, FOXS1, TAF7L, TFEB, TRPC5, MYCL, TAF11ADAMTS6SNTA1, RNF2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for TAF9_ADAMTS6


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for TAF9_ADAMTS6


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneTAF9C0019693HIV Infections1CTD_human