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Fusion gene ID: 37129 |
FusionGeneSummary for TAF8_COL5A3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: TAF8_COL5A3 | Fusion gene ID: 37129 | Hgene | Tgene | Gene symbol | TAF8 | COL5A3 | Gene ID | 129685 | 50509 |
| Gene name | TATA-box binding protein associated factor 8 | collagen type V alpha 3 chain | |
| Synonyms | II|TAF|TAFII-43|TAFII43|TBN | - | |
| Cytomap | 6p21.1 | 19p13.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | transcription initiation factor TFIID subunit 8TAF(II)43TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDaTATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 45/50kDaTBP-associated factor 43 kDaTBP-ass | collagen alpha-3(V) chaincollagen, type V, alpha 3pro-(alpha)3(V) collagen | |
| Modification date | 20180522 | 20180523 | |
| UniProtAcc | Q7Z7C8 | P25940 | |
| Ensembl transtripts involved in fusion gene | ENST00000372978, ENST00000494547, ENST00000456846, ENST00000372982, ENST00000472818, ENST00000372977, ENST00000482926, ENST00000465926, ENST00000482432, | ENST00000264828, | |
| Fusion gene scores | * DoF score | 7 X 6 X 6=252 | 6 X 5 X 6=180 |
| # samples | 9 | 7 | |
| ** MAII score | log2(9/252*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/180*10)=-1.36257007938471 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: TAF8 [Title/Abstract] AND COL5A3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | TAF8 | GO:0045598 | regulation of fat cell differentiation | 14580349 |
| Hgene | TAF8 | GO:0045893 | positive regulation of transcription, DNA-templated | 14580349 |
| Hgene | TAF8 | GO:0051457 | maintenance of protein location in nucleus | 15870280 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LGG | TCGA-TM-A7CF-01A | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| TCGA | RV | LGG | TCGA-TM-A7CF-02A | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000372978 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| 3UTR-3CDS | ENST00000494547 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| Frame-shift | ENST00000456846 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| 3UTR-3CDS | ENST00000372982 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| intron-3CDS | ENST00000472818 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| Frame-shift | ENST00000372977 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| intron-3CDS | ENST00000482926 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| Frame-shift | ENST00000465926 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
| intron-3CDS | ENST00000482432 | ENST00000264828 | TAF8 | chr6 | 42044977 | + | COL5A3 | chr19 | 10116907 | - |
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FusionProtFeatures for TAF8_COL5A3 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| TAF8 | COL5A3 |
| Transcription factor TFIID is one of the general factorsrequired for accurate and regulated initiation by RNA polymeraseII. Mediates both basal and activator-dependent transcription.Plays a role in the differentiation of preadipocyte fibroblasts toadipocytes, however, does not seem to play a role indifferentiation of myoblasts. Required for the integration ofTAF10 in the TAF complex. May be important for survival of cellsof the inner cell mass which constitute the pluripotent cellpopulation of the early embryo (By similarity). {ECO:0000250,ECO:0000269|PubMed:14580349}. | Type V collagen is a member of group I collagen(fibrillar forming collagen). It is a minor connective tissuecomponent of nearly ubiquitous distribution. Type V collagen bindsto DNA, heparan sulfate, thrombospondin, heparin, and insulin. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for TAF8_COL5A3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for TAF8_COL5A3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| TAF8 | TAF4, TBP, TAF10, TAF6, TAF13, TAF5, SUPT7L, TAF8, TAF11, TAF1, TAF2, TAF7, TAF9, KPNA2, KPNB1, HIST3H3, MED26, MEF2A, GNB2, ZDHHC17, TAF4B, TAF9B, TAF12, TTC29, PLK2, KIAA1107, KIF7, TAF3, TAF7L, DSCC1, TRIM25 | COL5A3 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for TAF8_COL5A3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TAF8_COL5A3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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