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Fusion gene ID: 36856 |
FusionGeneSummary for SWT1_COLGALT2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SWT1_COLGALT2 | Fusion gene ID: 36856 | Hgene | Tgene | Gene symbol | SWT1 | COLGALT2 | Gene ID | 54823 | 23127 |
| Gene name | SWT1, RNA endoribonuclease homolog | collagen beta(1-O)galactosyltransferase 2 | |
| Synonyms | C1orf26|HsSwt1 | C1orf17|ColGalT 2|GLT25D2 | |
| Cytomap | 1q25.3 | 1q25.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | transcriptional protein SWT1 | procollagen galactosyltransferase 2glycosyltransferase 25 domain containing 2glycosyltransferase 25 family member 2hydroxylysine galactosyltransferase 2 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q5T5J6 | Q8IYK4 | |
| Ensembl transtripts involved in fusion gene | ENST00000367501, ENST00000367500, | ENST00000546159, ENST00000486375, ENST00000367521, ENST00000361927, ENST00000367520, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 5 X 3 X 4=60 |
| # samples | 2 | 5 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: SWT1 [Title/Abstract] AND COLGALT2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | SARC | TCGA-DX-A48N-01A | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000367501 | ENST00000546159 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| 5CDS-intron | ENST00000367501 | ENST00000486375 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| 5CDS-intron | ENST00000367501 | ENST00000367521 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| 5CDS-intron | ENST00000367501 | ENST00000361927 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| 5CDS-intron | ENST00000367501 | ENST00000367520 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| In-frame | ENST00000367500 | ENST00000546159 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| 5CDS-intron | ENST00000367500 | ENST00000486375 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| 5CDS-intron | ENST00000367500 | ENST00000367521 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| 5CDS-intron | ENST00000367500 | ENST00000361927 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
| 5CDS-intron | ENST00000367500 | ENST00000367520 | SWT1 | chr1 | 185200840 | + | COLGALT2 | chr1 | 183947654 | - |
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FusionProtFeatures for SWT1_COLGALT2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SWT1 | COLGALT2 |
| Beta-galactosyltransferase that transfers beta-galactoseto hydroxylysine residues of collagen.{ECO:0000269|PubMed:19075007}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | SWT1 | chr1:185200840 | chr1:183947654 | ENST00000367500 | + | 16 | 19 | 38_44 | 813 | 901 | Compositional bias | Note=Poly-Ser |
| Hgene | SWT1 | chr1:185200840 | chr1:183947654 | ENST00000367501 | + | 16 | 19 | 38_44 | 813 | 901 | Compositional bias | Note=Poly-Ser |
| Hgene | SWT1 | chr1:185200840 | chr1:183947654 | ENST00000367500 | + | 16 | 19 | 388_515 | 813 | 901 | Domain | Note=PINc |
| Hgene | SWT1 | chr1:185200840 | chr1:183947654 | ENST00000367501 | + | 16 | 19 | 388_515 | 813 | 901 | Domain | Note=PINc |
| Tgene | >COLGALT2 | chr1:185200840 | chr1:183947654 | ENST00000361927 | - | 0 | 12 | 623_626 | 87 | 627 | Motif | Prevents secretion from ER |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SWT1_COLGALT2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_SWT1_ENST00000367501_chr1_185200840_+_COLGALT2_ENST00000546159_chr1_183947654_-_1281aa MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIKRRQGLKRLSVEIDTLRRRPKIG SSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR EKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYL ESSQVSLNVTRQKTEHLLSDFTYKRTVHEWKRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVGKSVDL PGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVLIIPWVVMQELDRMKEGKLLKRAQHKAIPAV HFINDSLKNQDRKLWGQSIQLASQKHYGLSDENNDDRVLKCCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLN TDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETEMKIAFGNLWMEILYLKPPWTLLHLLQCFKK HWLAVFGLVMEKNLLLTIESLYKNLRKANKAVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEVKTKLKPNSSENT VTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSNSALTTSNIASFEEAFICLQKLMAAVRDILE GIQRAATDHNVDNTTEIFREWLKNVQRLYHYVEWRPMDEPESYPDEIGPKHWPTSRFAHVMKLRQAALRTAREKWSDYILFIDVDNFLTN PQTLNLLIAENKTIVAPMLESRGLYSNFWCGITPKGFYKRTPDYVQIREWKRTGCFPVPMVHSTFLIDLRKEASDKLTFYPPHQDYTWTF DDIIVFAFSSRQAGIQMYLCNREHYGYLPIPLKPHQTLQEDIENLIHVQIEAMIDRPPMEPSQYVSVVPKYPDKMGFDEIFMINLKRRKD RRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRPLTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQ FKKKLMKLMDNIDQAQLDWELIYIGRKRMQVKEPEKAVPNVANLVEADYSYWTLGYVISLEGAQKLVGANPFGKMLPVDEFLPVMYNKHP >In-frame_SWT1_ENST00000367500_chr1_185200840_+_COLGALT2_ENST00000546159_chr1_183947654_-_1281aa MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIKRRQGLKRLSVEIDTLRRRPKIG SSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDIHKCVDFKPKDIKLTNAGSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQR EKMKELKKGRNSKFRDNSEKCVLEKWKRNQFSQDYNSNKIIKEPLGSRRQKISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYL ESSQVSLNVTRQKTEHLLSDFTYKRTVHEWKRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELHAARVGKSVDL PGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVLIIPWVVMQELDRMKEGKLLKRAQHKAIPAV HFINDSLKNQDRKLWGQSIQLASQKHYGLSDENNDDRVLKCCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLN TDVCHQPCIPKQQLKAETTPLKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETEMKIAFGNLWMEILYLKPPWTLLHLLQCFKK HWLAVFGLVMEKNLLLTIESLYKNLRKANKAVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNNLLQTFAEVKTKLKPNSSENT VTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNSTDVFQRLGSNSALTTSNIASFEEAFICLQKLMAAVRDILE GIQRAATDHNVDNTTEIFREWLKNVQRLYHYVEWRPMDEPESYPDEIGPKHWPTSRFAHVMKLRQAALRTAREKWSDYILFIDVDNFLTN PQTLNLLIAENKTIVAPMLESRGLYSNFWCGITPKGFYKRTPDYVQIREWKRTGCFPVPMVHSTFLIDLRKEASDKLTFYPPHQDYTWTF DDIIVFAFSSRQAGIQMYLCNREHYGYLPIPLKPHQTLQEDIENLIHVQIEAMIDRPPMEPSQYVSVVPKYPDKMGFDEIFMINLKRRKD RRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRPLTRGEIGCFLSHYSVWKEVIDRELEKTLVIEDDVRFEHQ FKKKLMKLMDNIDQAQLDWELIYIGRKRMQVKEPEKAVPNVANLVEADYSYWTLGYVISLEGAQKLVGANPFGKMLPVDEFLPVMYNKHP |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_SWT1_ENST00000367501_chr1_185200840_+_COLGALT2_ENST00000546159_chr1_183947654_-_3843nt ATGTCCAGCAAAGAATCCTGTGGGAAAAAAGAGACATCTCAGAGGAAAGACACCACCACCTCATCACCCAATTTTGGTGAAAAAGACAAG AAAGAGAGAAAAACCCCAGCAAGTTCTACTAGTTCATCTTCTATAAGATCAGTTTCATCAGAAAAGAGAAAACTGAAATCAGATCATACA GATGTTCTGTACTATAATATAAAAAGAAGACAAGGACTGAAAAGATTGAGTGTAGAAATTGACACTCTCAGAAGGAGACCAAAAATCGGT TCTTCATCCCAAAGACCTATTAAACTCAAAGAAGCATCATATTCAAATGATAATCAAATTATTTTGCAGAGTCCTTCTTCAAATGGAACT AAAAAAGACATACATAAATGTGTAGACTTTAAACCTAAAGATATCAAATTGACAAATGCTGGGAGCAAGCTTGACCATGGAATTAAAAGC CTTAGTAGTCCTAAGATTGCCAGTGATGTGAAACCTAAAGCCGAAGGCCAGGCAAGTGAAAATAAATGGTCTCATTTACTTGTTCAGAGA GAGAAGATGAAAGAACTCAAGAAAGGAAGAAACAGTAAATTTAGAGACAATTCTGAAAAATGTGTCTTAGAGAAATGGAAGAGAAATCAA TTTTCTCAGGATTATAACTCCAACAAGATAATTAAGGAACCCTTGGGATCTAGAAGACAGAAGATCAGTTTCAAAATCCCTATAAAATCC CGTGACACCCTCCAGAAACTTGTAGAAGAAAATGTCTTCAACATAGATTCTAATAATTCGAAGACTAAGCAGGAAGAAAGAGAATACCTG GAAAGCTCCCAGGTTTCATTAAATGTGACTAGGCAGAAAACTGAACATTTACTTTCAGATTTTACATATAAGCGGACTGTTCATGAGTGG AAACGAAAACATCATTATGACCATCAAGAAAGTAATGATTCACATTCTAGGGAAAACCTAACCCAGAGTTTTGAAGCACCATGTTGTTCC GTGTCATCTGAAAGTATCCAGGATGCAGATCAAGAGATGCAGATAGTAGAAGAGCTTCATGCTGCACGTGTGGGAAAAAGTGTGGATTTA CCTGGAGAGTTAATGAGTATGGAAATTGACTTAGAAGATGATGTACATTCCTCCTCTGCAAATAATACTTCAGACAGAAAGCTTCTAATT GTTATTGACACAAATATTCTGATGAATCATCTCAAATTTGTTAGAATTTTGAAGACAACAGAAGTACCAGGTTTTGACAAACTTGTGTTA ATAATTCCCTGGGTCGTTATGCAAGAGCTAGATCGTATGAAGGAAGGAAAACTACTAAAACGTGCCCAGCACAAAGCTATACCTGCAGTT CATTTCATCAACGACAGTCTCAAAAATCAAGATAGAAAGCTATGGGGTCAGTCAATACAACTTGCATCCCAAAAACATTATGGATTGAGT GATGAGAACAATGATGATCGAGTACTAAAATGCTGTCTCCAGCACCAGGAATTATTCCCTTGTTCTTTTGTTATTCTGTGCACGGATGAT AGAAACTTAAGAAACAAAGGCCTAATAAGTGGTGTGAAGTCACTCAGTAAAGAAGAATTGAGTGCAGAGTTATTACACTTATCTCTGAAC ACAGATGTGTGTCATCAGCCTTGTATTCCTAAGCAACAGTTGAAAGCAGAAACAACACCCTTGAAAGAGAGCTATAAGGAGGAATCTACA AATTCTGGACTGTCCATTCTGCTTGAGAGCATTGTATCTGATCTTGAAAAATCTCTTGGAACAGGTTTATCTTCAATATTAGAAACAGAA ATGAAAATTGCTTTTGGAAACCTTTGGATGGAGATCCTGTACCTGAAACCACCATGGACTCTACTACATTTACTACAGTGCTTTAAAAAA CATTGGTTGGCTGTATTTGGATTAGTTATGGAAAAGAACTTGCTTTTAACTATTGAGAGCCTATACAAAAATCTCCGTAAAGCTAATAAG GCAGTGGATTTTACAACAGTCAAATTCTTGCTTCAGGATTCTAGAAGTTTGTTACATGCTTTCAGTACAAGGTCAAATTATGATGGTATT CTTCCACAGACCTTTGCTCAAGTAAACAACCTCCTTCAGACATTTGCAGAGGTCAAGACAAAACTTAAGCCAAATTCTTCAGAAAACACA GTGACTAAAAAGCAGGAAGGTACTTCATTGAAGAATTCTCATAATCAAGAAATCACTGTTTTCTCGAGTTCTCATCTTCCCCAACCCAGC AGGCATCAAGAAATCTGGTCTATCCTAGAGAGTGTTTGGATTACAATATATCAGAACAGCACGGATGTATTTCAAAGATTGGGCTCAAAT TCAGCTCTGACTACTTCAAATATAGCATCATTTGAAGAAGCATTTATATGTCTTCAAAAGTTAATGGCAGCTGTGAGGGATATTCTTGAA GGAATTCAAAGGGCAGCCACTGATCACAATGTGGATAATACAACAGAAATATTCAGGGAGTGGTTGAAAAATGTACAGAGACTCTATCAC TATGTGGAGTGGAGGCCTATGGATGAACCAGAGTCTTACCCTGATGAAATTGGACCAAAGCACTGGCCAACCTCCCGGTTTGCCCATGTG ATGAAACTACGACAGGCAGCCCTTCGAACTGCGAGGGAAAAATGGTCAGACTACATTCTGTTCATAGATGTTGACAATTTCCTGACTAAT CCACAGACCCTCAATCTACTGATTGCAGAAAACAAAACTATTGTGGCCCCCATGCTGGAGTCTCGGGGCCTGTATTCTAATTTCTGGTGC GGAATCACCCCTAAGGGCTTCTATAAGAGGACCCCAGACTACGTTCAGATTCGAGAATGGAAGAGGACAGGCTGCTTCCCCGTCCCCATG GTCCACTCCACCTTCCTAATTGACCTCAGGAAGGAGGCCTCGGACAAGCTGACTTTCTACCCCCCACACCAGGACTACACCTGGACCTTT GATGACATCATTGTCTTTGCCTTCTCCAGCAGGCAAGCAGGCATCCAGATGTACCTCTGCAACAGAGAGCACTATGGCTACCTGCCCATC CCCCTGAAGCCCCATCAGACACTGCAGGAAGACATCGAGAACCTCATCCATGTGCAGATTGAAGCAATGATTGACCGTCCTCCAATGGAA CCCTCCCAGTATGTCTCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAGATTTTCATGATAAACCTCAAACGCAGAAAGGAC AGGCGGGACCGGATGCTGCGCACACTGTATGAACAGGAGATTGAGGTCAAGATTGTCGAGGCTGTGGATGGAAAGGCACTCAACACAAGC CAGCTGAAGGCACTGAATATTGAAATGCTGCCTGGCTATCGAGATCCCTATTCCTCCAGGCCTCTAACAAGGGGTGAAATCGGCTGCTTT CTCAGCCACTACTCAGTCTGGAAAGAGGTAATTGATCGAGAGCTAGAGAAGACTCTTGTAATTGAAGACGATGTGCGTTTTGAGCATCAG TTTAAGAAGAAGCTGATGAAGCTGATGGATAACATTGACCAGGCTCAGCTGGACTGGGAACTGATTTATATTGGTAGGAAGAGGATGCAA GTAAAGGAGCCAGAGAAAGCAGTGCCCAATGTGGCAAACCTGGTCGAAGCCGACTATTCCTACTGGACCCTGGGCTACGTCATCTCTCTG GAAGGAGCACAGAAGCTGGTTGGAGCCAATCCTTTTGGGAAGATGCTGCCAGTGGATGAGTTTCTGCCAGTCATGTACAACAAGCATCCC >In-frame_SWT1_ENST00000367500_chr1_185200840_+_COLGALT2_ENST00000546159_chr1_183947654_-_3843nt ATGTCCAGCAAAGAATCCTGTGGGAAAAAAGAGACATCTCAGAGGAAAGACACCACCACCTCATCACCCAATTTTGGTGAAAAAGACAAG AAAGAGAGAAAAACCCCAGCAAGTTCTACTAGTTCATCTTCTATAAGATCAGTTTCATCAGAAAAGAGAAAACTGAAATCAGATCATACA GATGTTCTGTACTATAATATAAAAAGAAGACAAGGACTGAAAAGATTGAGTGTAGAAATTGACACTCTCAGAAGGAGACCAAAAATCGGT TCTTCATCCCAAAGACCTATTAAACTCAAAGAAGCATCATATTCAAATGATAATCAAATTATTTTGCAGAGTCCTTCTTCAAATGGAACT AAAAAAGACATACATAAATGTGTAGACTTTAAACCTAAAGATATCAAATTGACAAATGCTGGGAGCAAGCTTGACCATGGAATTAAAAGC CTTAGTAGTCCTAAGATTGCCAGTGATGTGAAACCTAAAGCCGAAGGCCAGGCAAGTGAAAATAAATGGTCTCATTTACTTGTTCAGAGA GAGAAGATGAAAGAACTCAAGAAAGGAAGAAACAGTAAATTTAGAGACAATTCTGAAAAATGTGTCTTAGAGAAATGGAAGAGAAATCAA TTTTCTCAGGATTATAACTCCAACAAGATAATTAAGGAACCCTTGGGATCTAGAAGACAGAAGATCAGTTTCAAAATCCCTATAAAATCC CGTGACACCCTCCAGAAACTTGTAGAAGAAAATGTCTTCAACATAGATTCTAATAATTCGAAGACTAAGCAGGAAGAAAGAGAATACCTG GAAAGCTCCCAGGTTTCATTAAATGTGACTAGGCAGAAAACTGAACATTTACTTTCAGATTTTACATATAAGCGGACTGTTCATGAGTGG AAACGAAAACATCATTATGACCATCAAGAAAGTAATGATTCACATTCTAGGGAAAACCTAACCCAGAGTTTTGAAGCACCATGTTGTTCC GTGTCATCTGAAAGTATCCAGGATGCAGATCAAGAGATGCAGATAGTAGAAGAGCTTCATGCTGCACGTGTGGGAAAAAGTGTGGATTTA CCTGGAGAGTTAATGAGTATGGAAATTGACTTAGAAGATGATGTACATTCCTCCTCTGCAAATAATACTTCAGACAGAAAGCTTCTAATT GTTATTGACACAAATATTCTGATGAATCATCTCAAATTTGTTAGAATTTTGAAGACAACAGAAGTACCAGGTTTTGACAAACTTGTGTTA ATAATTCCCTGGGTCGTTATGCAAGAGCTAGATCGTATGAAGGAAGGAAAACTACTAAAACGTGCCCAGCACAAAGCTATACCTGCAGTT CATTTCATCAACGACAGTCTCAAAAATCAAGATAGAAAGCTATGGGGTCAGTCAATACAACTTGCATCCCAAAAACATTATGGATTGAGT GATGAGAACAATGATGATCGAGTACTAAAATGCTGTCTCCAGCACCAGGAATTATTCCCTTGTTCTTTTGTTATTCTGTGCACGGATGAT AGAAACTTAAGAAACAAAGGCCTAATAAGTGGTGTGAAGTCACTCAGTAAAGAAGAATTGAGTGCAGAGTTATTACACTTATCTCTGAAC ACAGATGTGTGTCATCAGCCTTGTATTCCTAAGCAACAGTTGAAAGCAGAAACAACACCCTTGAAAGAGAGCTATAAGGAGGAATCTACA AATTCTGGACTGTCCATTCTGCTTGAGAGCATTGTATCTGATCTTGAAAAATCTCTTGGAACAGGTTTATCTTCAATATTAGAAACAGAA ATGAAAATTGCTTTTGGAAACCTTTGGATGGAGATCCTGTACCTGAAACCACCATGGACTCTACTACATTTACTACAGTGCTTTAAAAAA CATTGGTTGGCTGTATTTGGATTAGTTATGGAAAAGAACTTGCTTTTAACTATTGAGAGCCTATACAAAAATCTCCGTAAAGCTAATAAG GCAGTGGATTTTACAACAGTCAAATTCTTGCTTCAGGATTCTAGAAGTTTGTTACATGCTTTCAGTACAAGGTCAAATTATGATGGTATT CTTCCACAGACCTTTGCTCAAGTAAACAACCTCCTTCAGACATTTGCAGAGGTCAAGACAAAACTTAAGCCAAATTCTTCAGAAAACACA GTGACTAAAAAGCAGGAAGGTACTTCATTGAAGAATTCTCATAATCAAGAAATCACTGTTTTCTCGAGTTCTCATCTTCCCCAACCCAGC AGGCATCAAGAAATCTGGTCTATCCTAGAGAGTGTTTGGATTACAATATATCAGAACAGCACGGATGTATTTCAAAGATTGGGCTCAAAT TCAGCTCTGACTACTTCAAATATAGCATCATTTGAAGAAGCATTTATATGTCTTCAAAAGTTAATGGCAGCTGTGAGGGATATTCTTGAA GGAATTCAAAGGGCAGCCACTGATCACAATGTGGATAATACAACAGAAATATTCAGGGAGTGGTTGAAAAATGTACAGAGACTCTATCAC TATGTGGAGTGGAGGCCTATGGATGAACCAGAGTCTTACCCTGATGAAATTGGACCAAAGCACTGGCCAACCTCCCGGTTTGCCCATGTG ATGAAACTACGACAGGCAGCCCTTCGAACTGCGAGGGAAAAATGGTCAGACTACATTCTGTTCATAGATGTTGACAATTTCCTGACTAAT CCACAGACCCTCAATCTACTGATTGCAGAAAACAAAACTATTGTGGCCCCCATGCTGGAGTCTCGGGGCCTGTATTCTAATTTCTGGTGC GGAATCACCCCTAAGGGCTTCTATAAGAGGACCCCAGACTACGTTCAGATTCGAGAATGGAAGAGGACAGGCTGCTTCCCCGTCCCCATG GTCCACTCCACCTTCCTAATTGACCTCAGGAAGGAGGCCTCGGACAAGCTGACTTTCTACCCCCCACACCAGGACTACACCTGGACCTTT GATGACATCATTGTCTTTGCCTTCTCCAGCAGGCAAGCAGGCATCCAGATGTACCTCTGCAACAGAGAGCACTATGGCTACCTGCCCATC CCCCTGAAGCCCCATCAGACACTGCAGGAAGACATCGAGAACCTCATCCATGTGCAGATTGAAGCAATGATTGACCGTCCTCCAATGGAA CCCTCCCAGTATGTCTCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAGATTTTCATGATAAACCTCAAACGCAGAAAGGAC AGGCGGGACCGGATGCTGCGCACACTGTATGAACAGGAGATTGAGGTCAAGATTGTCGAGGCTGTGGATGGAAAGGCACTCAACACAAGC CAGCTGAAGGCACTGAATATTGAAATGCTGCCTGGCTATCGAGATCCCTATTCCTCCAGGCCTCTAACAAGGGGTGAAATCGGCTGCTTT CTCAGCCACTACTCAGTCTGGAAAGAGGTAATTGATCGAGAGCTAGAGAAGACTCTTGTAATTGAAGACGATGTGCGTTTTGAGCATCAG TTTAAGAAGAAGCTGATGAAGCTGATGGATAACATTGACCAGGCTCAGCTGGACTGGGAACTGATTTATATTGGTAGGAAGAGGATGCAA GTAAAGGAGCCAGAGAAAGCAGTGCCCAATGTGGCAAACCTGGTCGAAGCCGACTATTCCTACTGGACCCTGGGCTACGTCATCTCTCTG GAAGGAGCACAGAAGCTGGTTGGAGCCAATCCTTTTGGGAAGATGCTGCCAGTGGATGAGTTTCTGCCAGTCATGTACAACAAGCATCCC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_SWT1_ENST00000367501_chr1_185200840_+_COLGALT2_ENST00000546159_chr1_183947654_-_4504nt AGGATACACTGCGCAGTCTGGGGGCGGGGCCGGAGTTCAAGCCTCGGAGGAAGTAAATGCAAATCTAAGCGAGCGCTGTGGGGCGCTTTT CAGGATGTCCAGCAAAGAATCCTGTGGGAAAAAAGAGACATCTCAGAGGAAAGACACCACCACCTCATCACCCAATTTTGGTGAAAAAGA CAAGAAAGAGAGAAAAACCCCAGCAAGTTCTACTAGTTCATCTTCTATAAGATCAGTTTCATCAGAAAAGAGAAAACTGAAATCAGATCA TACAGATGTTCTGTACTATAATATAAAAAGAAGACAAGGACTGAAAAGATTGAGTGTAGAAATTGACACTCTCAGAAGGAGACCAAAAAT CGGTTCTTCATCCCAAAGACCTATTAAACTCAAAGAAGCATCATATTCAAATGATAATCAAATTATTTTGCAGAGTCCTTCTTCAAATGG AACTAAAAAAGACATACATAAATGTGTAGACTTTAAACCTAAAGATATCAAATTGACAAATGCTGGGAGCAAGCTTGACCATGGAATTAA AAGCCTTAGTAGTCCTAAGATTGCCAGTGATGTGAAACCTAAAGCCGAAGGCCAGGCAAGTGAAAATAAATGGTCTCATTTACTTGTTCA GAGAGAGAAGATGAAAGAACTCAAGAAAGGAAGAAACAGTAAATTTAGAGACAATTCTGAAAAATGTGTCTTAGAGAAATGGAAGAGAAA TCAATTTTCTCAGGATTATAACTCCAACAAGATAATTAAGGAACCCTTGGGATCTAGAAGACAGAAGATCAGTTTCAAAATCCCTATAAA ATCCCGTGACACCCTCCAGAAACTTGTAGAAGAAAATGTCTTCAACATAGATTCTAATAATTCGAAGACTAAGCAGGAAGAAAGAGAATA CCTGGAAAGCTCCCAGGTTTCATTAAATGTGACTAGGCAGAAAACTGAACATTTACTTTCAGATTTTACATATAAGCGGACTGTTCATGA GTGGAAACGAAAACATCATTATGACCATCAAGAAAGTAATGATTCACATTCTAGGGAAAACCTAACCCAGAGTTTTGAAGCACCATGTTG TTCCGTGTCATCTGAAAGTATCCAGGATGCAGATCAAGAGATGCAGATAGTAGAAGAGCTTCATGCTGCACGTGTGGGAAAAAGTGTGGA TTTACCTGGAGAGTTAATGAGTATGGAAATTGACTTAGAAGATGATGTACATTCCTCCTCTGCAAATAATACTTCAGACAGAAAGCTTCT AATTGTTATTGACACAAATATTCTGATGAATCATCTCAAATTTGTTAGAATTTTGAAGACAACAGAAGTACCAGGTTTTGACAAACTTGT GTTAATAATTCCCTGGGTCGTTATGCAAGAGCTAGATCGTATGAAGGAAGGAAAACTACTAAAACGTGCCCAGCACAAAGCTATACCTGC AGTTCATTTCATCAACGACAGTCTCAAAAATCAAGATAGAAAGCTATGGGGTCAGTCAATACAACTTGCATCCCAAAAACATTATGGATT GAGTGATGAGAACAATGATGATCGAGTACTAAAATGCTGTCTCCAGCACCAGGAATTATTCCCTTGTTCTTTTGTTATTCTGTGCACGGA TGATAGAAACTTAAGAAACAAAGGCCTAATAAGTGGTGTGAAGTCACTCAGTAAAGAAGAATTGAGTGCAGAGTTATTACACTTATCTCT GAACACAGATGTGTGTCATCAGCCTTGTATTCCTAAGCAACAGTTGAAAGCAGAAACAACACCCTTGAAAGAGAGCTATAAGGAGGAATC TACAAATTCTGGACTGTCCATTCTGCTTGAGAGCATTGTATCTGATCTTGAAAAATCTCTTGGAACAGGTTTATCTTCAATATTAGAAAC AGAAATGAAAATTGCTTTTGGAAACCTTTGGATGGAGATCCTGTACCTGAAACCACCATGGACTCTACTACATTTACTACAGTGCTTTAA AAAACATTGGTTGGCTGTATTTGGATTAGTTATGGAAAAGAACTTGCTTTTAACTATTGAGAGCCTATACAAAAATCTCCGTAAAGCTAA TAAGGCAGTGGATTTTACAACAGTCAAATTCTTGCTTCAGGATTCTAGAAGTTTGTTACATGCTTTCAGTACAAGGTCAAATTATGATGG TATTCTTCCACAGACCTTTGCTCAAGTAAACAACCTCCTTCAGACATTTGCAGAGGTCAAGACAAAACTTAAGCCAAATTCTTCAGAAAA CACAGTGACTAAAAAGCAGGAAGGTACTTCATTGAAGAATTCTCATAATCAAGAAATCACTGTTTTCTCGAGTTCTCATCTTCCCCAACC CAGCAGGCATCAAGAAATCTGGTCTATCCTAGAGAGTGTTTGGATTACAATATATCAGAACAGCACGGATGTATTTCAAAGATTGGGCTC AAATTCAGCTCTGACTACTTCAAATATAGCATCATTTGAAGAAGCATTTATATGTCTTCAAAAGTTAATGGCAGCTGTGAGGGATATTCT TGAAGGAATTCAAAGGGCAGCCACTGATCACAATGTGGATAATACAACAGAAATATTCAGGGAGTGGTTGAAAAATGTACAGAGACTCTA TCACTATGTGGAGTGGAGGCCTATGGATGAACCAGAGTCTTACCCTGATGAAATTGGACCAAAGCACTGGCCAACCTCCCGGTTTGCCCA TGTGATGAAACTACGACAGGCAGCCCTTCGAACTGCGAGGGAAAAATGGTCAGACTACATTCTGTTCATAGATGTTGACAATTTCCTGAC TAATCCACAGACCCTCAATCTACTGATTGCAGAAAACAAAACTATTGTGGCCCCCATGCTGGAGTCTCGGGGCCTGTATTCTAATTTCTG GTGCGGAATCACCCCTAAGGGCTTCTATAAGAGGACCCCAGACTACGTTCAGATTCGAGAATGGAAGAGGACAGGCTGCTTCCCCGTCCC CATGGTCCACTCCACCTTCCTAATTGACCTCAGGAAGGAGGCCTCGGACAAGCTGACTTTCTACCCCCCACACCAGGACTACACCTGGAC CTTTGATGACATCATTGTCTTTGCCTTCTCCAGCAGGCAAGCAGGCATCCAGATGTACCTCTGCAACAGAGAGCACTATGGCTACCTGCC CATCCCCCTGAAGCCCCATCAGACACTGCAGGAAGACATCGAGAACCTCATCCATGTGCAGATTGAAGCAATGATTGACCGTCCTCCAAT GGAACCCTCCCAGTATGTCTCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAGATTTTCATGATAAACCTCAAACGCAGAAA GGACAGGCGGGACCGGATGCTGCGCACACTGTATGAACAGGAGATTGAGGTCAAGATTGTCGAGGCTGTGGATGGAAAGGCACTCAACAC AAGCCAGCTGAAGGCACTGAATATTGAAATGCTGCCTGGCTATCGAGATCCCTATTCCTCCAGGCCTCTAACAAGGGGTGAAATCGGCTG CTTTCTCAGCCACTACTCAGTCTGGAAAGAGGTAATTGATCGAGAGCTAGAGAAGACTCTTGTAATTGAAGACGATGTGCGTTTTGAGCA TCAGTTTAAGAAGAAGCTGATGAAGCTGATGGATAACATTGACCAGGCTCAGCTGGACTGGGAACTGATTTATATTGGTAGGAAGAGGAT GCAAGTAAAGGAGCCAGAGAAAGCAGTGCCCAATGTGGCAAACCTGGTCGAAGCCGACTATTCCTACTGGACCCTGGGCTACGTCATCTC TCTGGAAGGAGCACAGAAGCTGGTTGGAGCCAATCCTTTTGGGAAGATGCTGCCAGTGGATGAGTTTCTGCCAGTCATGTACAACAAGCA TCCCGTCCTCCTCTCAAGTCCTCACTGCCATCTCTTCCAAACACTTTCTGATGACTGCCAACGGTGAACAAACCCGTGCACCCTAGGAGA AGGCATTACCCCTCTGTGGCAGAGGTGGTCGTGTTCATCAACTCCTCCAGGTTTCTCCTGCATTTCCCACCTCCCCTGTACTCACATCGG GCCCGGGGACTGGTTGATGGGCTGTGAACAGAAGTGACAGGTGTCGCTTTGGTCTAAGGCAGTTGGGAACAGTTTGTGAGTTCTCTTTAC TCTCTTTATCATCACTGTGACTGGAAGGGAAACACCGAGATGGCGAAGTTGCAAGATGGAAGCTGCCTGGATCTGTGAGCTGCTGTTAGA GAAAAGCTACTAAGGAGTTTCCTGGCTTGCATTACACTGTCCCGTGAAAGAAAAAATAAACCTCGGTCTTAAGCTGTTGAAATTTCTTGG TTTGTTACTTCGGTCCAGCCTAGCCTAGCCTAACACATCCCTTCCAAAGGTATTTAATTTTAAGAGAGATGTCTAGGGGGAAAAGCAATG CAAAATGCAATGGAAATAACTTTGCCTAGTGGAAATGTAGGCATCTGAAGAAAAAGAGGTTTGAGTCAGGAACCTCCTCAGTCCCCCTGA >In-frame_SWT1_ENST00000367500_chr1_185200840_+_COLGALT2_ENST00000546159_chr1_183947654_-_4575nt GGGGCGGTGAGTAGGTAGTGCGGATGCGGGCGCAGAACTACGTTTCCCAGCAGGCATACAGTTGGTGGGGCGGGGTGTGTGTGTGTGTTG GGAGGCGGGGGTCCCTCTCCTTTGGCTTGGGGCTCCGGAGTTGCCACTGCCGCCGGCGCTGGTAAGCTTTTCAGGATGTCCAGCAAAGAA TCCTGTGGGAAAAAAGAGACATCTCAGAGGAAAGACACCACCACCTCATCACCCAATTTTGGTGAAAAAGACAAGAAAGAGAGAAAAACC CCAGCAAGTTCTACTAGTTCATCTTCTATAAGATCAGTTTCATCAGAAAAGAGAAAACTGAAATCAGATCATACAGATGTTCTGTACTAT AATATAAAAAGAAGACAAGGACTGAAAAGATTGAGTGTAGAAATTGACACTCTCAGAAGGAGACCAAAAATCGGTTCTTCATCCCAAAGA CCTATTAAACTCAAAGAAGCATCATATTCAAATGATAATCAAATTATTTTGCAGAGTCCTTCTTCAAATGGAACTAAAAAAGACATACAT AAATGTGTAGACTTTAAACCTAAAGATATCAAATTGACAAATGCTGGGAGCAAGCTTGACCATGGAATTAAAAGCCTTAGTAGTCCTAAG ATTGCCAGTGATGTGAAACCTAAAGCCGAAGGCCAGGCAAGTGAAAATAAATGGTCTCATTTACTTGTTCAGAGAGAGAAGATGAAAGAA CTCAAGAAAGGAAGAAACAGTAAATTTAGAGACAATTCTGAAAAATGTGTCTTAGAGAAATGGAAGAGAAATCAATTTTCTCAGGATTAT AACTCCAACAAGATAATTAAGGAACCCTTGGGATCTAGAAGACAGAAGATCAGTTTCAAAATCCCTATAAAATCCCGTGACACCCTCCAG AAACTTGTAGAAGAAAATGTCTTCAACATAGATTCTAATAATTCGAAGACTAAGCAGGAAGAAAGAGAATACCTGGAAAGCTCCCAGGTT TCATTAAATGTGACTAGGCAGAAAACTGAACATTTACTTTCAGATTTTACATATAAGCGGACTGTTCATGAGTGGAAACGAAAACATCAT TATGACCATCAAGAAAGTAATGATTCACATTCTAGGGAAAACCTAACCCAGAGTTTTGAAGCACCATGTTGTTCCGTGTCATCTGAAAGT ATCCAGGATGCAGATCAAGAGATGCAGATAGTAGAAGAGCTTCATGCTGCACGTGTGGGAAAAAGTGTGGATTTACCTGGAGAGTTAATG AGTATGGAAATTGACTTAGAAGATGATGTACATTCCTCCTCTGCAAATAATACTTCAGACAGAAAGCTTCTAATTGTTATTGACACAAAT ATTCTGATGAATCATCTCAAATTTGTTAGAATTTTGAAGACAACAGAAGTACCAGGTTTTGACAAACTTGTGTTAATAATTCCCTGGGTC GTTATGCAAGAGCTAGATCGTATGAAGGAAGGAAAACTACTAAAACGTGCCCAGCACAAAGCTATACCTGCAGTTCATTTCATCAACGAC AGTCTCAAAAATCAAGATAGAAAGCTATGGGGTCAGTCAATACAACTTGCATCCCAAAAACATTATGGATTGAGTGATGAGAACAATGAT GATCGAGTACTAAAATGCTGTCTCCAGCACCAGGAATTATTCCCTTGTTCTTTTGTTATTCTGTGCACGGATGATAGAAACTTAAGAAAC AAAGGCCTAATAAGTGGTGTGAAGTCACTCAGTAAAGAAGAATTGAGTGCAGAGTTATTACACTTATCTCTGAACACAGATGTGTGTCAT CAGCCTTGTATTCCTAAGCAACAGTTGAAAGCAGAAACAACACCCTTGAAAGAGAGCTATAAGGAGGAATCTACAAATTCTGGACTGTCC ATTCTGCTTGAGAGCATTGTATCTGATCTTGAAAAATCTCTTGGAACAGGTTTATCTTCAATATTAGAAACAGAAATGAAAATTGCTTTT GGAAACCTTTGGATGGAGATCCTGTACCTGAAACCACCATGGACTCTACTACATTTACTACAGTGCTTTAAAAAACATTGGTTGGCTGTA TTTGGATTAGTTATGGAAAAGAACTTGCTTTTAACTATTGAGAGCCTATACAAAAATCTCCGTAAAGCTAATAAGGCAGTGGATTTTACA ACAGTCAAATTCTTGCTTCAGGATTCTAGAAGTTTGTTACATGCTTTCAGTACAAGGTCAAATTATGATGGTATTCTTCCACAGACCTTT GCTCAAGTAAACAACCTCCTTCAGACATTTGCAGAGGTCAAGACAAAACTTAAGCCAAATTCTTCAGAAAACACAGTGACTAAAAAGCAG GAAGGTACTTCATTGAAGAATTCTCATAATCAAGAAATCACTGTTTTCTCGAGTTCTCATCTTCCCCAACCCAGCAGGCATCAAGAAATC TGGTCTATCCTAGAGAGTGTTTGGATTACAATATATCAGAACAGCACGGATGTATTTCAAAGATTGGGCTCAAATTCAGCTCTGACTACT TCAAATATAGCATCATTTGAAGAAGCATTTATATGTCTTCAAAAGTTAATGGCAGCTGTGAGGGATATTCTTGAAGGAATTCAAAGGGCA GCCACTGATCACAATGTGGATAATACAACAGAAATATTCAGGGAGTGGTTGAAAAATGTACAGAGACTCTATCACTATGTGGAGTGGAGG CCTATGGATGAACCAGAGTCTTACCCTGATGAAATTGGACCAAAGCACTGGCCAACCTCCCGGTTTGCCCATGTGATGAAACTACGACAG GCAGCCCTTCGAACTGCGAGGGAAAAATGGTCAGACTACATTCTGTTCATAGATGTTGACAATTTCCTGACTAATCCACAGACCCTCAAT CTACTGATTGCAGAAAACAAAACTATTGTGGCCCCCATGCTGGAGTCTCGGGGCCTGTATTCTAATTTCTGGTGCGGAATCACCCCTAAG GGCTTCTATAAGAGGACCCCAGACTACGTTCAGATTCGAGAATGGAAGAGGACAGGCTGCTTCCCCGTCCCCATGGTCCACTCCACCTTC CTAATTGACCTCAGGAAGGAGGCCTCGGACAAGCTGACTTTCTACCCCCCACACCAGGACTACACCTGGACCTTTGATGACATCATTGTC TTTGCCTTCTCCAGCAGGCAAGCAGGCATCCAGATGTACCTCTGCAACAGAGAGCACTATGGCTACCTGCCCATCCCCCTGAAGCCCCAT CAGACACTGCAGGAAGACATCGAGAACCTCATCCATGTGCAGATTGAAGCAATGATTGACCGTCCTCCAATGGAACCCTCCCAGTATGTC TCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAGATTTTCATGATAAACCTCAAACGCAGAAAGGACAGGCGGGACCGGATG CTGCGCACACTGTATGAACAGGAGATTGAGGTCAAGATTGTCGAGGCTGTGGATGGAAAGGCACTCAACACAAGCCAGCTGAAGGCACTG AATATTGAAATGCTGCCTGGCTATCGAGATCCCTATTCCTCCAGGCCTCTAACAAGGGGTGAAATCGGCTGCTTTCTCAGCCACTACTCA GTCTGGAAAGAGGTAATTGATCGAGAGCTAGAGAAGACTCTTGTAATTGAAGACGATGTGCGTTTTGAGCATCAGTTTAAGAAGAAGCTG ATGAAGCTGATGGATAACATTGACCAGGCTCAGCTGGACTGGGAACTGATTTATATTGGTAGGAAGAGGATGCAAGTAAAGGAGCCAGAG AAAGCAGTGCCCAATGTGGCAAACCTGGTCGAAGCCGACTATTCCTACTGGACCCTGGGCTACGTCATCTCTCTGGAAGGAGCACAGAAG CTGGTTGGAGCCAATCCTTTTGGGAAGATGCTGCCAGTGGATGAGTTTCTGCCAGTCATGTACAACAAGCATCCCGTCCTCCTCTCAAGT CCTCACTGCCATCTCTTCCAAACACTTTCTGATGACTGCCAACGGTGAACAAACCCGTGCACCCTAGGAGAAGGCATTACCCCTCTGTGG CAGAGGTGGTCGTGTTCATCAACTCCTCCAGGTTTCTCCTGCATTTCCCACCTCCCCTGTACTCACATCGGGCCCGGGGACTGGTTGATG GGCTGTGAACAGAAGTGACAGGTGTCGCTTTGGTCTAAGGCAGTTGGGAACAGTTTGTGAGTTCTCTTTACTCTCTTTATCATCACTGTG ACTGGAAGGGAAACACCGAGATGGCGAAGTTGCAAGATGGAAGCTGCCTGGATCTGTGAGCTGCTGTTAGAGAAAAGCTACTAAGGAGTT TCCTGGCTTGCATTACACTGTCCCGTGAAAGAAAAAATAAACCTCGGTCTTAAGCTGTTGAAATTTCTTGGTTTGTTACTTCGGTCCAGC CTAGCCTAGCCTAACACATCCCTTCCAAAGGTATTTAATTTTAAGAGAGATGTCTAGGGGGAAAAGCAATGCAAAATGCAATGGAAATAA |
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FusionGenePPI for SWT1_COLGALT2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| SWT1 | AURKA, EGFR | COLGALT2 | FBXO6, UBQLN1, C1QB, C1QTNF2, COLEC11, CNPY3, C1QTNF3, COLEC10, UBXN11, FCN1, C1QTNF9, SEMG1, EMID1, PSG9, COL8A2, TMEM255A, VPS33B, VIPAS39, COL4A1, COL2A1, SPATA20, COL4A2, COL1A1, COLQ, VWA1, DOK1, CNKSR3, TCF3, PCBP3, COL6A2, COL4A5, FAM136A, COLGALT1, COL10A1, SCARA5, OS9, CACNB4, MSR1, MRPS36 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SWT1_COLGALT2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SWT1_COLGALT2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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