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Fusion gene ID: 36812 |
FusionGeneSummary for SUSD4_NVL |
Fusion gene summary |
Fusion gene information | Fusion gene name: SUSD4_NVL | Fusion gene ID: 36812 | Hgene | Tgene | Gene symbol | SUSD4 | NVL | Gene ID | 55061 | 4931 |
Gene name | sushi domain containing 4 | nuclear VCP-like | |
Synonyms | PRO222 | NVL2 | |
Cytomap | 1q41 | 1q42.11 | |
Type of gene | protein-coding | protein-coding | |
Description | sushi domain-containing protein 4YHGM196testicular secretory protein Li 55 | nuclear valosin-containing protein-likeNVLp | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q5VX71 | O15381 | |
Ensembl transtripts involved in fusion gene | ENST00000343846, ENST00000366878, ENST00000484758, ENST00000494793, ENST00000478605, ENST00000454695, ENST00000344029, ENST00000366877, | ENST00000391875, ENST00000281701, ENST00000469075, ENST00000482491, ENST00000340871, ENST00000361463, ENST00000468673, | |
Fusion gene scores | * DoF score | 4 X 2 X 3=24 | 3 X 3 X 3=27 |
# samples | 4 | 3 | |
** MAII score | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SUSD4 [Title/Abstract] AND NVL [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SUSD4 | GO:0030449 | regulation of complement activation | 23482636 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-AO-A12D-01A | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000343846 | ENST00000391875 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
In-frame | ENST00000343846 | ENST00000281701 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
In-frame | ENST00000343846 | ENST00000469075 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
In-frame | ENST00000343846 | ENST00000482491 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
In-frame | ENST00000343846 | ENST00000340871 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
In-frame | ENST00000343846 | ENST00000361463 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5CDS-intron | ENST00000343846 | ENST00000468673 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366878 | ENST00000391875 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366878 | ENST00000281701 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366878 | ENST00000469075 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366878 | ENST00000482491 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366878 | ENST00000340871 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366878 | ENST00000361463 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5CDS-intron | ENST00000366878 | ENST00000468673 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000484758 | ENST00000391875 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000484758 | ENST00000281701 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000484758 | ENST00000469075 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000484758 | ENST00000482491 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000484758 | ENST00000340871 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000484758 | ENST00000361463 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5CDS-intron | ENST00000484758 | ENST00000468673 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000494793 | ENST00000391875 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000494793 | ENST00000281701 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000494793 | ENST00000469075 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000494793 | ENST00000482491 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000494793 | ENST00000340871 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000494793 | ENST00000361463 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5CDS-intron | ENST00000494793 | ENST00000468673 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000478605 | ENST00000391875 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000478605 | ENST00000281701 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000478605 | ENST00000469075 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000478605 | ENST00000482491 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000478605 | ENST00000340871 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000478605 | ENST00000361463 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-intron | ENST00000478605 | ENST00000468673 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000454695 | ENST00000391875 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000454695 | ENST00000281701 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000454695 | ENST00000469075 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000454695 | ENST00000482491 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000454695 | ENST00000340871 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-3CDS | ENST00000454695 | ENST00000361463 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5UTR-intron | ENST00000454695 | ENST00000468673 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000344029 | ENST00000391875 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000344029 | ENST00000281701 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000344029 | ENST00000469075 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000344029 | ENST00000482491 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000344029 | ENST00000340871 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000344029 | ENST00000361463 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5CDS-intron | ENST00000344029 | ENST00000468673 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366877 | ENST00000391875 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366877 | ENST00000281701 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366877 | ENST00000469075 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366877 | ENST00000482491 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366877 | ENST00000340871 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
Frame-shift | ENST00000366877 | ENST00000361463 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
5CDS-intron | ENST00000366877 | ENST00000468673 | SUSD4 | chr1 | 223536620 | - | NVL | chr1 | 224468887 | - |
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FusionProtFeatures for SUSD4_NVL |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
SUSD4 | NVL |
Acts as complement inhibitor by disrupting the formationof the classical C3 convertase. Isoform 3 inhibits the classicalcomplement pathway, while membrane-bound isoform 1 inhibitsdeposition of C3b via both the classical and alternativecomplement pathways. {ECO:0000269|PubMed:23482636}. | Participates in the assembly of the telomeraseholoenzyme and effecting of telomerase activity via itsinteraction with TERT (PubMed:22226966). May play a role in 60Sribosomal subunit biogenesis (PubMed:15469983, PubMed:16782053).{ECO:0000269|PubMed:15469983, ECO:0000269|PubMed:16782053,ECO:0000269|PubMed:22226966}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >NVL | chr1:223536620 | chr1:224468887 | ENST00000340871 | - | 12 | 21 | 622_629 | 444 | 668 | Nucleotide binding | ATP |
Tgene | >NVL | chr1:223536620 | chr1:224468887 | ENST00000391875 | - | 13 | 22 | 622_629 | 527 | 751 | Nucleotide binding | ATP |
Tgene | >NVL | chr1:223536620 | chr1:224468887 | ENST00000469075 | - | 13 | 22 | 622_629 | 542 | 766 | Nucleotide binding | ATP |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000343846 | - | 1 | 8 | 120_179 | 49 | 491 | Domain | Sushi 2 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000343846 | - | 1 | 8 | 178_239 | 49 | 491 | Domain | Sushi 3 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000343846 | - | 1 | 8 | 241_304 | 49 | 491 | Domain | Sushi 4 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000343846 | - | 1 | 8 | 55_119 | 49 | 491 | Domain | Sushi 1 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000344029 | - | 2 | 6 | 120_179 | 49 | 291 | Domain | Sushi 2 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000344029 | - | 2 | 6 | 178_239 | 49 | 291 | Domain | Sushi 3 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000344029 | - | 2 | 6 | 241_304 | 49 | 291 | Domain | Sushi 4 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000344029 | - | 2 | 6 | 55_119 | 49 | 291 | Domain | Sushi 1 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000366878 | - | 2 | 9 | 120_179 | 49 | 491 | Domain | Sushi 2 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000366878 | - | 2 | 9 | 178_239 | 49 | 491 | Domain | Sushi 3 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000366878 | - | 2 | 9 | 241_304 | 49 | 491 | Domain | Sushi 4 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000366878 | - | 2 | 9 | 55_119 | 49 | 491 | Domain | Sushi 1 |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000343846 | - | 1 | 8 | 341_490 | 49 | 491 | Topological domain | Cytoplasmic |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000343846 | - | 1 | 8 | 42_319 | 49 | 491 | Topological domain | Extracellular |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000344029 | - | 2 | 6 | 341_490 | 49 | 291 | Topological domain | Cytoplasmic |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000344029 | - | 2 | 6 | 42_319 | 49 | 291 | Topological domain | Extracellular |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000366878 | - | 2 | 9 | 341_490 | 49 | 491 | Topological domain | Cytoplasmic |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000366878 | - | 2 | 9 | 42_319 | 49 | 491 | Topological domain | Extracellular |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000343846 | - | 1 | 8 | 320_340 | 49 | 491 | Transmembrane | Helical |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000344029 | - | 2 | 6 | 320_340 | 49 | 291 | Transmembrane | Helical |
Hgene | >SUSD4 | chr1:223536620 | chr1:224468887 | ENST00000366878 | - | 2 | 9 | 320_340 | 49 | 491 | Transmembrane | Helical |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000281701 | - | 14 | 23 | 218_232 | 633 | 857 | Motif | Nuclear localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000281701 | - | 14 | 23 | 49_52 | 633 | 857 | Motif | Nucleolar localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000281701 | - | 14 | 23 | 85_88 | 633 | 857 | Motif | Nuclear localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000340871 | - | 12 | 21 | 218_232 | 444 | 668 | Motif | Nuclear localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000340871 | - | 12 | 21 | 49_52 | 444 | 668 | Motif | Nucleolar localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000340871 | - | 12 | 21 | 85_88 | 444 | 668 | Motif | Nuclear localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000391875 | - | 13 | 22 | 218_232 | 527 | 751 | Motif | Nuclear localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000391875 | - | 13 | 22 | 49_52 | 527 | 751 | Motif | Nucleolar localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000391875 | - | 13 | 22 | 85_88 | 527 | 751 | Motif | Nuclear localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000469075 | - | 13 | 22 | 218_232 | 542 | 766 | Motif | Nuclear localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000469075 | - | 13 | 22 | 49_52 | 542 | 766 | Motif | Nucleolar localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000469075 | - | 13 | 22 | 85_88 | 542 | 766 | Motif | Nuclear localization signal |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000281701 | - | 14 | 23 | 305_312 | 633 | 857 | Nucleotide binding | ATP |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000281701 | - | 14 | 23 | 622_629 | 633 | 857 | Nucleotide binding | ATP |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000340871 | - | 12 | 21 | 305_312 | 444 | 668 | Nucleotide binding | ATP |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000391875 | - | 13 | 22 | 305_312 | 527 | 751 | Nucleotide binding | ATP |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000469075 | - | 13 | 22 | 305_312 | 542 | 766 | Nucleotide binding | ATP |
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FusionGeneSequence for SUSD4_NVL |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000391875_chr1_224468887_-_273aa MYHGMNPSNGDGFLEQQQQQQQPQSPQRLLAVILWFQLALCFGPAQLTGGCCKXVRTKFYICQGPRITKHVCWXEXTCCATSFSTSQELS TLCDILXXSGCFMSSKIRPRDRGKCPSGESATYRDGWSGSTPAGFYYGSHXQARYNXPCNPAPGPPGQNTVCGFTAPCRSPCHLKNYHKK WYQTTTGCRCKFGSNCWXPSLXLLYGRRSLCFGTRSFYLCPETGNGKTEEWKXKRXTQGXSXAFXRSFQESKIIYIKKGSNHVXTFAGVP >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000281701_chr1_224468887_-_273aa MYHGMNPSNGDGFLEQQQQQQQPQSPQRLLAVILWFQLALCFGPAQLTGGCCKXVRTKFYICQGPRITKHVCWXEXTCCATSFSTSQELS TLCDILXXSGCFMSSKIRPRDRGKCPSGESATYRDGWSGSTPAGFYYGSHXQARYNXPCNPAPGPPGQNTVCGFTAPCRSPCHLKNYHKK WYQTTTGCRCKFGSNCWXPSLXLLYGRRSLCFGTRSFYLCPETGNGKTEEWKXKRXTQGXSXAFXRSFQESKIIYIKKGSNHVXTFAGVP >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000469075_chr1_224468887_-_273aa MYHGMNPSNGDGFLEQQQQQQQPQSPQRLLAVILWFQLALCFGPAQLTGGCCKXVRTKFYICQGPRITKHVCWXEXTCCATSFSTSQELS TLCDILXXSGCFMSSKIRPRDRGKCPSGESATYRDGWSGSTPAGFYYGSHXQARYNXPCNPAPGPPGQNTVCGFTAPCRSPCHLKNYHKK WYQTTTGCRCKFGSNCWXPSLXLLYGRRSLCFGTRSFYLCPETGNGKTEEWKXKRXTQGXSXAFXRSFQESKIIYIKKGSNHVXTFAGVP >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000482491_chr1_224468887_-_273aa MYHGMNPSNGDGFLEQQQQQQQPQSPQRLLAVILWFQLALCFGPAQLTGGCCKXVRTKFYICQGPRITKHVCWXEXTCCATSFSTSQELS TLCDILXXSGCFMSSKIRPRDRGKCPSGESATYRDGWSGSTPAGFYYGSHXQARYNXPCNPAPGPPGQNTVCGFTAPCRSPCHLKNYHKK WYQTTTGCRCKFGSNCWXPSLXLLYGRRSLCFGTRSFYLCPETGNGKTEEWKXKRXTQGXSXAFXRSFQESKIIYIKKGSNHVXTFAGVP >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000340871_chr1_224468887_-_273aa MYHGMNPSNGDGFLEQQQQQQQPQSPQRLLAVILWFQLALCFGPAQLTGGCCKXVRTKFYICQGPRITKHVCWXEXTCCATSFSTSQELS TLCDILXXSGCFMSSKIRPRDRGKCPSGESATYRDGWSGSTPAGFYYGSHXQARYNXPCNPAPGPPGQNTVCGFTAPCRSPCHLKNYHKK WYQTTTGCRCKFGSNCWXPSLXLLYGRRSLCFGTRSFYLCPETGNGKTEEWKXKRXTQGXSXAFXRSFQESKIIYIKKGSNHVXTFAGVP >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000361463_chr1_224468887_-_112aa MYHGMNPSNGDGFLEQQQQQQQPQSPQRLLAVILWFQLALCFGPAQLTGGCCKXVRTKFYICQGPRITKHVCWXEXTCCATSFSTSQELS |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000391875_chr1_224468887_-_820nt ATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACTCTTG GCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATTTTAT ATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACTCAGC ACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGAATCA GCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTGCAAT CCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAAAAAA TGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATCTCTC TGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGGTTAG TCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGTCCCT >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000281701_chr1_224468887_-_820nt ATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACTCTTG GCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATTTTAT ATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACTCAGC ACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGAATCA GCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTGCAAT CCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAAAAAA TGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATCTCTC TGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGGTTAG TCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGTCCCT >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000469075_chr1_224468887_-_820nt ATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACTCTTG GCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATTTTAT ATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACTCAGC ACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGAATCA GCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTGCAAT CCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAAAAAA TGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATCTCTC TGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGGTTAG TCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGTCCCT >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000482491_chr1_224468887_-_820nt ATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACTCTTG GCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATTTTAT ATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACTCAGC ACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGAATCA GCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTGCAAT CCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAAAAAA TGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATCTCTC TGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGGTTAG TCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGTCCCT >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000340871_chr1_224468887_-_820nt ATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACTCTTG GCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATTTTAT ATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACTCAGC ACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGAATCA GCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTGCAAT CCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAAAAAA TGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATCTCTC TGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGGTTAG TCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGTCCCT >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000361463_chr1_224468887_-_337nt ATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACTCTTG GCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATTTTAT ATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACTCAGC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000391875_chr1_224468887_-_1746nt CAGGTAAGACCGACAGTCCCGGAAGGGTCTTCCATTCCGAGGAGGCGCGCGCAGGCCGGGGAGGGGGAGTTGGTGCCTGGTGCAGCTCCC CAAGGGAGAATTTTTTTTTTTTTTTTGACAGCGCAGAGAAATCTCACTGGGGACTGGGGCAGTAGGATCGATCCCAATCCCGAGGAAAAC CAGAGAAGTAGCTGGGGGAGACGGTGCCACATTGTGAGATTCCCAGAGTGAAATGTATAGGCCCAGGGAAAAGTGTCTTCGCGGCCCCGA GACGCGGGGAGGCTCTAGACTTTCCTGTGGTGGGCACAGCTGCTGAATCCCGGGGACCGGCGCGGAGCCAATGTGCGCTAACCCCTGCCC TCCCTCCTGTCCTCCATCCCCCAGCACGCGCAGCATCCCACGGCGGCTGTTACTCAGTGCACCCGGCTCGGGGGAAGGCGGGGGACCTCG CCGTGGGAAAGGGGGCGGGGGCCGCGCGGGGGAGGAACCAGGATGGAGCCTGGGAAGCCGAGGCGCCGGGTCCCAGAGCGGAGGAGGGGG AGCGTGGCCCCCGAGCCCGGACAGACTGGCTTATTGTGGTGTTCCGCTTCTGGTTGCAGACTCTTGCAAGCTGGATGCCCTCTGTGGATG AAAGATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACT CTTGGCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATT TTATATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACT CAGCACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGA ATCAGCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTG CAATCCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAA AAAATGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATC TCTCTGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGG TTAGTCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGT CCCTCAGCCGGTGATGTCTCCAGCAGCCGGCTTAGAGGAGCTAGCCCATCAAGCCGGCAGAGAATCCCCCACACGCTCTGAAGGACCCAC TTTCAGCTGGACACAGGCGCGGCCTCATGTAAACATTTTATTTTCAAATGAATGAGGCCAAGCTGAAGCTGAAGCTGAAGATTCTTCCCA TCTGGCCAGCCTTGTGTGAAAATGCCTTCTTCCTCTTTAAGAAAAAGGACAATTTTTAAACTGCTGAAATAAAATGACTGTTACATTTTT >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000281701_chr1_224468887_-_1746nt CAGGTAAGACCGACAGTCCCGGAAGGGTCTTCCATTCCGAGGAGGCGCGCGCAGGCCGGGGAGGGGGAGTTGGTGCCTGGTGCAGCTCCC CAAGGGAGAATTTTTTTTTTTTTTTTGACAGCGCAGAGAAATCTCACTGGGGACTGGGGCAGTAGGATCGATCCCAATCCCGAGGAAAAC CAGAGAAGTAGCTGGGGGAGACGGTGCCACATTGTGAGATTCCCAGAGTGAAATGTATAGGCCCAGGGAAAAGTGTCTTCGCGGCCCCGA GACGCGGGGAGGCTCTAGACTTTCCTGTGGTGGGCACAGCTGCTGAATCCCGGGGACCGGCGCGGAGCCAATGTGCGCTAACCCCTGCCC TCCCTCCTGTCCTCCATCCCCCAGCACGCGCAGCATCCCACGGCGGCTGTTACTCAGTGCACCCGGCTCGGGGGAAGGCGGGGGACCTCG CCGTGGGAAAGGGGGCGGGGGCCGCGCGGGGGAGGAACCAGGATGGAGCCTGGGAAGCCGAGGCGCCGGGTCCCAGAGCGGAGGAGGGGG AGCGTGGCCCCCGAGCCCGGACAGACTGGCTTATTGTGGTGTTCCGCTTCTGGTTGCAGACTCTTGCAAGCTGGATGCCCTCTGTGGATG AAAGATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACT CTTGGCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATT TTATATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACT CAGCACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGA ATCAGCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTG CAATCCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAA AAAATGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATC TCTCTGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGG TTAGTCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGT CCCTCAGCCGGTGATGTCTCCAGCAGCCGGCTTAGAGGAGCTAGCCCATCAAGCCGGCAGAGAATCCCCCACACGCTCTGAAGGACCCAC TTTCAGCTGGACACAGGCGCGGCCTCATGTAAACATTTTATTTTCAAATGAATGAGGCCAAGCTGAAGCTGAAGCTGAAGATTCTTCCCA TCTGGCCAGCCTTGTGTGAAAATGCCTTCTTCCTCTTTAAGAAAAAGGACAATTTTTAAACTGCTGAAATAAAATGACTGTTACATTTTT >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000469075_chr1_224468887_-_1711nt CAGGTAAGACCGACAGTCCCGGAAGGGTCTTCCATTCCGAGGAGGCGCGCGCAGGCCGGGGAGGGGGAGTTGGTGCCTGGTGCAGCTCCC CAAGGGAGAATTTTTTTTTTTTTTTTGACAGCGCAGAGAAATCTCACTGGGGACTGGGGCAGTAGGATCGATCCCAATCCCGAGGAAAAC CAGAGAAGTAGCTGGGGGAGACGGTGCCACATTGTGAGATTCCCAGAGTGAAATGTATAGGCCCAGGGAAAAGTGTCTTCGCGGCCCCGA GACGCGGGGAGGCTCTAGACTTTCCTGTGGTGGGCACAGCTGCTGAATCCCGGGGACCGGCGCGGAGCCAATGTGCGCTAACCCCTGCCC TCCCTCCTGTCCTCCATCCCCCAGCACGCGCAGCATCCCACGGCGGCTGTTACTCAGTGCACCCGGCTCGGGGGAAGGCGGGGGACCTCG CCGTGGGAAAGGGGGCGGGGGCCGCGCGGGGGAGGAACCAGGATGGAGCCTGGGAAGCCGAGGCGCCGGGTCCCAGAGCGGAGGAGGGGG AGCGTGGCCCCCGAGCCCGGACAGACTGGCTTATTGTGGTGTTCCGCTTCTGGTTGCAGACTCTTGCAAGCTGGATGCCCTCTGTGGATG AAAGATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACT CTTGGCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATT TTATATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACT CAGCACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGA ATCAGCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTG CAATCCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAA AAAATGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATC TCTCTGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGG TTAGTCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGT CCCTCAGCCGGTGATGTCTCCAGCAGCCGGCTTAGAGGAGCTAGCCCATCAAGCCGGCAGAGAATCCCCCACACGCTCTGAAGGACCCAC TTTCAGCTGGACACAGGCGCGGCCTCATGTAAACATTTTATTTTCAAATGAATGAGGCCAAGCTGAAGCTGAAGCTGAAGATTCTTCCCA TCTGGCCAGCCTTGTGTGAAAATGCCTTCTTCCTCTTTAAGAAAAAGGACAATTTTTAAACTGCTGAAATAAAATGACTGTTACATTTTT >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000482491_chr1_224468887_-_1626nt CAGGTAAGACCGACAGTCCCGGAAGGGTCTTCCATTCCGAGGAGGCGCGCGCAGGCCGGGGAGGGGGAGTTGGTGCCTGGTGCAGCTCCC CAAGGGAGAATTTTTTTTTTTTTTTTGACAGCGCAGAGAAATCTCACTGGGGACTGGGGCAGTAGGATCGATCCCAATCCCGAGGAAAAC CAGAGAAGTAGCTGGGGGAGACGGTGCCACATTGTGAGATTCCCAGAGTGAAATGTATAGGCCCAGGGAAAAGTGTCTTCGCGGCCCCGA GACGCGGGGAGGCTCTAGACTTTCCTGTGGTGGGCACAGCTGCTGAATCCCGGGGACCGGCGCGGAGCCAATGTGCGCTAACCCCTGCCC TCCCTCCTGTCCTCCATCCCCCAGCACGCGCAGCATCCCACGGCGGCTGTTACTCAGTGCACCCGGCTCGGGGGAAGGCGGGGGACCTCG CCGTGGGAAAGGGGGCGGGGGCCGCGCGGGGGAGGAACCAGGATGGAGCCTGGGAAGCCGAGGCGCCGGGTCCCAGAGCGGAGGAGGGGG AGCGTGGCCCCCGAGCCCGGACAGACTGGCTTATTGTGGTGTTCCGCTTCTGGTTGCAGACTCTTGCAAGCTGGATGCCCTCTGTGGATG AAAGATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACT CTTGGCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATT TTATATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACT CAGCACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGA ATCAGCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTG CAATCCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAA AAAATGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATC TCTCTGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGG TTAGTCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGT CCCTCAGCCGGTGATGTCTCCAGCAGCCGGCTTAGAGGAGCTAGCCCATCAAGCCGGCAGAGAATCCCCCACACGCTCTGAAGGACCCAC TTTCAGCTGGACACAGGCGCGGCCTCATGTAAACATTTTATTTTCAAATGAATGAGGCCAAGCTGAAGCTGAAGCTGAAGATTCTTCCCA >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000340871_chr1_224468887_-_1626nt CAGGTAAGACCGACAGTCCCGGAAGGGTCTTCCATTCCGAGGAGGCGCGCGCAGGCCGGGGAGGGGGAGTTGGTGCCTGGTGCAGCTCCC CAAGGGAGAATTTTTTTTTTTTTTTTGACAGCGCAGAGAAATCTCACTGGGGACTGGGGCAGTAGGATCGATCCCAATCCCGAGGAAAAC CAGAGAAGTAGCTGGGGGAGACGGTGCCACATTGTGAGATTCCCAGAGTGAAATGTATAGGCCCAGGGAAAAGTGTCTTCGCGGCCCCGA GACGCGGGGAGGCTCTAGACTTTCCTGTGGTGGGCACAGCTGCTGAATCCCGGGGACCGGCGCGGAGCCAATGTGCGCTAACCCCTGCCC TCCCTCCTGTCCTCCATCCCCCAGCACGCGCAGCATCCCACGGCGGCTGTTACTCAGTGCACCCGGCTCGGGGGAAGGCGGGGGACCTCG CCGTGGGAAAGGGGGCGGGGGCCGCGCGGGGGAGGAACCAGGATGGAGCCTGGGAAGCCGAGGCGCCGGGTCCCAGAGCGGAGGAGGGGG AGCGTGGCCCCCGAGCCCGGACAGACTGGCTTATTGTGGTGTTCCGCTTCTGGTTGCAGACTCTTGCAAGCTGGATGCCCTCTGTGGATG AAAGATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACT CTTGGCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATT TTATATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACT CAGCACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGAGTGGTGA ATCAGCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCACTAACAGGCCAGATATAATTGACCCTG CAATCCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAA AAAATGGTACCAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATC TCTCTGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGAAAAAGGTGAACTCAAGG TTAGTCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCAAAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGT CCCTCAGCCGGTGATGTCTCCAGCAGCCGGCTTAGAGGAGCTAGCCCATCAAGCCGGCAGAGAATCCCCCACACGCTCTGAAGGACCCAC TTTCAGCTGGACACAGGCGCGGCCTCATGTAAACATTTTATTTTCAAATGAATGAGGCCAAGCTGAAGCTGAAGCTGAAGATTCTTCCCA >In-frame_SUSD4_ENST00000343846_chr1_223536620_-_NVL_ENST00000361463_chr1_224468887_-_1232nt CAGGTAAGACCGACAGTCCCGGAAGGGTCTTCCATTCCGAGGAGGCGCGCGCAGGCCGGGGAGGGGGAGTTGGTGCCTGGTGCAGCTCCC CAAGGGAGAATTTTTTTTTTTTTTTTGACAGCGCAGAGAAATCTCACTGGGGACTGGGGCAGTAGGATCGATCCCAATCCCGAGGAAAAC CAGAGAAGTAGCTGGGGGAGACGGTGCCACATTGTGAGATTCCCAGAGTGAAATGTATAGGCCCAGGGAAAAGTGTCTTCGCGGCCCCGA GACGCGGGGAGGCTCTAGACTTTCCTGTGGTGGGCACAGCTGCTGAATCCCGGGGACCGGCGCGGAGCCAATGTGCGCTAACCCCTGCCC TCCCTCCTGTCCTCCATCCCCCAGCACGCGCAGCATCCCACGGCGGCTGTTACTCAGTGCACCCGGCTCGGGGGAAGGCGGGGGACCTCG CCGTGGGAAAGGGGGCGGGGGCCGCGCGGGGGAGGAACCAGGATGGAGCCTGGGAAGCCGAGGCGCCGGGTCCCAGAGCGGAGGAGGGGG AGCGTGGCCCCCGAGCCCGGACAGACTGGCTTATTGTGGTGTTCCGCTTCTGGTTGCAGACTCTTGCAAGCTGGATGCCCTCTGTGGATG AAAGATGTATCATGGAATGAACCCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACT CTTGGCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGCTGTTGCAAATGAGTCCGGACTAAATT TTATATCTGTCAAGGGCCCCGAATTACTAAACATGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACT CAGCACCCTGTGTGATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGATATAATTGACCCTGCAATCCTGCG CCCGGGCCGCCTGGACAAAACACTGTTTGTGGGTTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAAAAAATGGTAC CAAACCACCACTGGATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATCTCTCTGCTTT 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FusionGenePPI for SUSD4_NVL |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SUSD4 | CNTNAP3, NNT, ATP12A, FAT1, LRP5, FRAS1, ITGAV, HSD17B8, NID2, ENTPD6, ARSK, LAMA5, GFPT2, KDELC2, TXNDC11, ITGA8, DHPS, NAGLU, CCDC85C, PLXNA2, PLXNA1, ITGA7, KIAA1467, CTSF, ADAMTS2, NLGN2, CACNA2D1, PAM, FUT11, IL17RA, POGLUT1, TOR3A, CERCAM, ARSB, MOXD1, PCOLCE2, MAN2A2, WDR34, HAPLN3, TCTN1, TXNDC16, ECE1, TUBB3, TUBA4A, ARSA | NVL | TTF2, CRMP1, OSGEP, SIRT7, CUL3, MOV10, RPL14, NPM1, PRR11, ILF2, HSPB1, IFI16, CEP164, CEP19, UBE2I, RHOA, CLCN2, HNRNPU, RPL10, UBA1, KIF21A, GPATCH4, RRP8, PES1, MAK16, ZNF512, PLEKHO1, FGF8, MECP2, RBM34, DGCR8, ZNF71, RBM4, PPAN |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000281701 | - | 14 | 23 | 1_220 | 633 | 857 | RPL5 |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000340871 | - | 12 | 21 | 1_220 | 444 | 668 | RPL5 |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000391875 | - | 13 | 22 | 1_220 | 527 | 751 | RPL5 |
Tgene | NVL | chr1:223536620 | chr1:224468887 | ENST00000469075 | - | 13 | 22 | 1_220 | 542 | 766 | RPL5 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SUSD4_NVL |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SUSD4_NVL |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |