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Fusion gene ID: 36637 |
FusionGeneSummary for STX18-AS1_MYL12A |
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Fusion gene information | Fusion gene name: STX18-AS1_MYL12A | Fusion gene ID: 36637 | Hgene | Tgene | Gene symbol | STX18-AS1 | MYL12A | Gene ID | 100507266 | 10627 |
Gene name | STX18 antisense RNA 1 (head to head) | myosin light chain 12A | |
Synonyms | - | HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B | |
Cytomap | 4p16.2 | 18p11.31 | |
Type of gene | ncRNA | protein-coding | |
Description | - | myosin regulatory light chain 12Aepididymis secretory protein Li 24myosin RLCmyosin regulatory light chain 2, nonsarcomericmyosin regulatory light chain 3myosin regulatory light chain MRLC3myosin, light chain 12A, regulatory, non-sarcomericmyosin, | |
Modification date | 20180329 | 20180522 | |
UniProtAcc | P19105 | ||
Ensembl transtripts involved in fusion gene | ENST00000512438, ENST00000610009, ENST00000502693, ENST00000499430, ENST00000507244, ENST00000514763, ENST00000608184, | ENST00000579226, ENST00000217652, ENST00000578611, ENST00000585090, ENST00000580887, ENST00000536605, | |
Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 6 X 5 X 2=60 |
# samples | 3 | 9 | |
** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(9/60*10)=0.584962500721156 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: STX18-AS1 [Title/Abstract] AND MYL12A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF825733 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000512438 | ENST00000579226 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000512438 | ENST00000217652 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000512438 | ENST00000578611 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000512438 | ENST00000585090 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000512438 | ENST00000580887 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000512438 | ENST00000536605 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000610009 | ENST00000579226 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000610009 | ENST00000217652 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000610009 | ENST00000578611 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000610009 | ENST00000585090 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000610009 | ENST00000580887 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000610009 | ENST00000536605 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000502693 | ENST00000579226 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000502693 | ENST00000217652 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000502693 | ENST00000578611 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000502693 | ENST00000585090 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000502693 | ENST00000580887 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000502693 | ENST00000536605 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000499430 | ENST00000579226 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000499430 | ENST00000217652 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000499430 | ENST00000578611 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000499430 | ENST00000585090 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000499430 | ENST00000580887 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000499430 | ENST00000536605 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000507244 | ENST00000579226 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000507244 | ENST00000217652 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000507244 | ENST00000578611 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000507244 | ENST00000585090 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000507244 | ENST00000580887 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000507244 | ENST00000536605 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000514763 | ENST00000579226 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000514763 | ENST00000217652 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000514763 | ENST00000578611 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000514763 | ENST00000585090 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000514763 | ENST00000580887 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000514763 | ENST00000536605 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000608184 | ENST00000579226 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000608184 | ENST00000217652 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-5UTR | ENST00000608184 | ENST00000578611 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000608184 | ENST00000585090 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000608184 | ENST00000580887 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
intron-intron | ENST00000608184 | ENST00000536605 | STX18-AS1 | chr4 | 4628757 | - | MYL12A | chr18 | 3247826 | + |
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FusionProtFeatures for STX18-AS1_MYL12A |
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Hgene | Tgene |
STX18-AS1 | MYL12A |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. | Myosin regulatory subunit that plays an important rolein regulation of both smooth muscle and nonmuscle cell contractileactivity via its phosphorylation. Implicated in cytokinesis,receptor capping, and cell locomotion (By similarity).{ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for STX18-AS1_MYL12A |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for STX18-AS1_MYL12A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for STX18-AS1_MYL12A |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for STX18-AS1_MYL12A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |