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Fusion gene ID: 3652 |
FusionGeneSummary for AXIN1_IFT140 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: AXIN1_IFT140 | Fusion gene ID: 3652 | Hgene | Tgene | Gene symbol | AXIN1 | IFT140 | Gene ID | 8312 | 9742 |
| Gene name | axin 1 | intraflagellar transport 140 | |
| Synonyms | AXIN|PPP1R49 | MZSDS|RP80|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114 | |
| Cytomap | 16p13.3 | 16p13.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | axin-1axis inhibition protein 1axis inhibitor 1fused, mouse, homolog ofprotein phosphatase 1, regulatory subunit 49 | intraflagellar transport protein 140 homologWD and tetratricopeptide repeats protein 2intraflagellar transport 140 homolog | |
| Modification date | 20180522 | 20180527 | |
| UniProtAcc | O15169 | Q96RY7 | |
| Ensembl transtripts involved in fusion gene | ENST00000262320, ENST00000354866, ENST00000481769, | ENST00000361339, ENST00000426508, ENST00000439987, | |
| Fusion gene scores | * DoF score | 11 X 4 X 8=352 | 8 X 9 X 7=504 |
| # samples | 12 | 11 | |
| ** MAII score | log2(12/352*10)=-1.55254102302878 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(11/504*10)=-2.19592020997526 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: AXIN1 [Title/Abstract] AND IFT140 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | AXIN1 | GO:0001934 | positive regulation of protein phosphorylation | 9601641 |
| Hgene | AXIN1 | GO:0030178 | negative regulation of Wnt signaling pathway | 10644691 |
| Hgene | AXIN1 | GO:0032147 | activation of protein kinase activity | 9601641 |
| Hgene | AXIN1 | GO:0034622 | cellular protein-containing complex assembly | 16601693 |
| Hgene | AXIN1 | GO:0045732 | positive regulation of protein catabolic process | 9601641 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | BRCA | TCGA-E9-A1NA-01A | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000262320 | ENST00000361339 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| 5CDS-5UTR | ENST00000262320 | ENST00000426508 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| 5CDS-intron | ENST00000262320 | ENST00000439987 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| 5CDS-5UTR | ENST00000354866 | ENST00000361339 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| 5CDS-5UTR | ENST00000354866 | ENST00000426508 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| 5CDS-intron | ENST00000354866 | ENST00000439987 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| 5UTR-5UTR | ENST00000481769 | ENST00000361339 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| 5UTR-5UTR | ENST00000481769 | ENST00000426508 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
| 5UTR-intron | ENST00000481769 | ENST00000439987 | AXIN1 | chr16 | 354304 | - | IFT140 | chr16 | 1576797 | - |
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FusionProtFeatures for AXIN1_IFT140 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| AXIN1 | IFT140 |
| Component of the beta-catenin destruction complexrequired for regulating CTNNB1 levels through phosphorylation andubiquitination, and modulating Wnt-signaling (PubMed:12192039,PubMed:27098453). Controls dorsoventral patterning via twoopposing effects; down-regulates CTNNB1 to inhibit the Wntsignaling pathway and ventralize embryos, but also dorsalizesembryos by activating a Wnt-independent JNK signaling pathway(PubMed:12192039). In Wnt signaling, probably facilitates thephosphorylation of CTNNB1 and APC by GSK3B (PubMed:12192039).Likely to function as a tumor suppressor. Enhances TGF-betasignaling by recruiting the RNF111 E3 ubiquitin ligase andpromoting the degradation of inhibitory SMAD7 (PubMed:16601693).Also component of the AXIN1-HIPK2-TP53 complex which controls cellgrowth, apoptosis and development (PubMed:17210684). Facilitatesthe phosphorylation of TP53 by HIPK2 upon ultraviolet irradiation(PubMed:17210684). {ECO:0000269|PubMed:12192039,ECO:0000269|PubMed:16601693, ECO:0000269|PubMed:17210684,ECO:0000269|PubMed:27098453}. | Component of the IFT complex A (IFT-A), a complexrequired for retrograde ciliary transport. Plays a pivotal role inproper development and function of ciliated cells. Involved inciliogenesis and cilia maintenance (PubMed:22503633). May play arole in ciliary assembly. Required for the development andmaintenance of the outer segments of rod and cone photoreceptorcells. Plays a role in maintenance and the delivery of opsin tothe outer segment of photoreceptor cells (By similarity).{ECO:0000250|UniProtKB:E9PY46, ECO:0000269|PubMed:22503633}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for AXIN1_IFT140 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for AXIN1_IFT140 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| AXIN1 | SMYD2, GSK3B, CTNNB1, APC, DAB2, DVL3, AXIN1, GAK, UTP14A, ANP32A, CRMP1, EEF1A1, LRP5, CSNK1E, CSNK1A1, MAP3K1, TSC1, TSC2, DVL2, DVL1, PPP2R5A, AMER1, DAXX, BTRC, PRMT1, CARM1, MYC, GSK3A, PIN1, PPP2CA, STRAP, PML, TP53, HIPK2, SMURF2, HTT, AXIN2, LRP6, SKI, SKIL, SMAD7, NCK2, PPP1CA, UBC, ARRB1, CAV1, TNFAIP3, SMURF1, LMO2, MYOT, GNAS, MAP3K4, FBXW11, TNKS, XPO1, CSNK1D, CTNNA1, JUP, MAPRE1, PUF60, GAPVD1, ARHGAP21, MAP3K2, USP15, WDR26, FOXM1, WDYHV1, USP7, TRIM25 | IFT140 | RANBP2, NEK2, PFDN1, C11orf74, IFT122, FBXW11, CRK, IFT43, TULP3, TULP2, FEZ1, CRYL1, DNAJC7, WDR19, WDR35, PISD, TTC21B, NIPSNAP1, NTPCR, ACSL3 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for AXIN1_IFT140 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for AXIN1_IFT140 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | AXIN1 | C2239176 | Liver carcinoma | 2 | CTD_human;HPO;UNIPROT |
| Tgene | IFT140 | C1849437 | Mainzer-Saldino Disease | 2 | ORPHANET;UNIPROT |
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