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Fusion gene ID: 36211 |
FusionGeneSummary for SSX2IP_WDPCP |
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Fusion gene information | Fusion gene name: SSX2IP_WDPCP | Fusion gene ID: 36211 | Hgene | Tgene | Gene symbol | SSX2IP | WDPCP | Gene ID | 117178 | 51057 |
Gene name | SSX family member 2 interacting protein | WD repeat containing planar cell polarity effector | |
Synonyms | ADIP|hMsd1 | BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ | |
Cytomap | 1p22.3 | 2p15 | |
Type of gene | protein-coding | protein-coding | |
Description | afadin- and alpha-actinin-binding proteinSSX2-interacting proteinafadin DIL domain-interacting proteinsynovial sarcoma, X breakpoint 2 interacting protein | WD repeat-containing and planar cell polarity effector protein fritz homologBardet-Biedl syndrome 15 proteinWD repeat-containing protein C2orf86ciliogenesis and planar polarity effector 5 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q9Y2D8 | O95876 | |
Ensembl transtripts involved in fusion gene | ENST00000437941, ENST00000342203, ENST00000605755, ENST00000603677, ENST00000370612, | ENST00000272321, ENST00000409199, ENST00000409120, ENST00000398544, ENST00000409562, ENST00000409835, | |
Fusion gene scores | * DoF score | 2 X 1 X 2=4 | 3 X 2 X 3=18 |
# samples | 2 | 4 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(4/18*10)=1.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SSX2IP [Title/Abstract] AND WDPCP [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | UCS | TCGA-N8-A4PP-01A | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-intron | ENST00000437941 | ENST00000272321 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000437941 | ENST00000409199 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000437941 | ENST00000409120 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000437941 | ENST00000398544 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000437941 | ENST00000409562 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000437941 | ENST00000409835 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000342203 | ENST00000272321 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000342203 | ENST00000409199 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000342203 | ENST00000409120 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000342203 | ENST00000398544 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000342203 | ENST00000409562 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000342203 | ENST00000409835 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000605755 | ENST00000272321 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000605755 | ENST00000409199 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000605755 | ENST00000409120 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000605755 | ENST00000398544 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000605755 | ENST00000409562 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000605755 | ENST00000409835 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000603677 | ENST00000272321 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000603677 | ENST00000409199 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000603677 | ENST00000409120 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000603677 | ENST00000398544 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000603677 | ENST00000409562 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
5UTR-intron | ENST00000603677 | ENST00000409835 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000370612 | ENST00000272321 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000370612 | ENST00000409199 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000370612 | ENST00000409120 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000370612 | ENST00000398544 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000370612 | ENST00000409562 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
intron-intron | ENST00000370612 | ENST00000409835 | SSX2IP | chr1 | 85155837 | - | WDPCP | chr2 | 63938725 | - |
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FusionProtFeatures for SSX2IP_WDPCP |
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Hgene | Tgene |
SSX2IP | WDPCP |
Probable effector of the planar cell polarity signalingpathway which regulates the septin cytoskeleton in bothciliogenesis and collective cell movements. Together with FUZ andWDPCP proposed to function as core component of the CPLANE(ciliogenesis and planar polarity effectors) complex involved inthe recruitment of peripheral IFT-A proteins to basal bodies (Bysimilarity). {ECO:0000250|UniProtKB:Q32NR9,ECO:0000250|UniProtKB:Q8C456}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SSX2IP_WDPCP |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SSX2IP_WDPCP |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SSX2IP | MLLT4, ACTN1, USP11, ELAVL1, CDC42, CCNH, YWHAZ, IKBKG, YWHAQ, LATS2, KDM1A, PRMT6, ARNT2, NDN, CEP250, XIAP, BYSL, DAXX, PHC2, EHHADH, EIF4A2, GEM, KRT15, KRT31, LMO2, MFAP1, MOS, TRIM37, DRG1, PRKAA1, PKN1, PSMA1, SSX2, TBP, TEAD4, TP53BP2, ZNF3, ZNF124, ZRSR2, NAA10, CDC23, AP1M1, TOP3B, LATS1, ZSCAN12, ZBTB24, SSX3, KAT5, WDR5, ABLIM3, TFIP11, PRPF31, POLL, C11orf54, SYT17, FAM64A, CCHCR1, CHCHD3, FANCL, CEP55, C14orf105, C19orf66, CDCA7L, FAM214A, TRIM54, KLHL42, ZNF250, KIF9, CARD9, AEN, TTC23, SCNM1, C20orf195, NOL12, FAM124B, INO80B, FAM161A, ZGPAT, BEX2, ZNF587, FBF1, MRPL53, SSX2IP, MORN4, FRMD6, KRT40, ZNF792, ZNF417, ZMAT2, TRIM42, KRTAP10-7, GOLGA8F, BRCA1, WRAP73, BTRC, MED4, HERC2, CEP128, LCA5, CEP290, CEP162, PCM1, PTCD3, IPO7, CEP131, MIB1, TUBA1A, NAP1L4, TUBB2A, CCDC138, DNAJA3, CCAR1, NTPCR, NUMA1, SCLT1, RCN1, SREK1, AHI1, AKTIP, CAMSAP1, CCDC85C, CCT7, CENPH, CEP350, CEP85, CKAP2, DVL1, DVL2, DVL3, ECH1, FAM120A, FAM21A, FMR1, GPATCH1, HAUS3, HAUS4, HAUS6, HAUS8, HOOK3, IFT74, KANK2, KATNA1, KATNB1, KIAA0753, KIAA1671, LRRC49, LUZP1, NEDD1, OFD1, PIBF1, PLEKHG1, PPP1R13B, RINT1, SDCCAG3, TCHP, TNRC6B, TP53, TPGS1, TRIM26, TTK, TXLNG, WDR83, XRN1, ABLIM1, ADSL, C19orf25, CNOT1, CSPP1, DHX35, EIF4ENIF1, HAUS1, IPO8, IRAK1, KIF7, LIMD1, MAP7D3, NDEL1, NME7, OCRL, PDLIM5, PTAR1, SEC24B, SIPA1L2, SMG7, TAB1, TBK1, TNIP1, TNRC6A, TNRC6C, TRIM9, TRIP6, VCPIP1, TBC1D31, CC2D2A, CEP104, CEP120, SPICE1, CEP135, CEP63, CEP89, CNTRL, NIN, ODF2, RPGRIP1L, POC5, SASS6, STIL, CENPJ, ZFYVE26, ZNF71, NIF3L1, XPO1, XRCC3, DYNLL1, FGFR1OP, MAPRE1, SDHAF2, CCDC14, TGS1, PTPN22, TPTE2, LZTS2, CRNN | WDPCP | TRIM25 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SSX2IP_WDPCP |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SSX2IP_WDPCP |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | WDPCP | C1857587 | Orstavik Lindemann Solberg syndrome | 1 | UNIPROT |