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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 36183

FusionGeneSummary for SSR1_SSR1

check button Fusion gene summary
Fusion gene informationFusion gene name: SSR1_SSR1
Fusion gene ID: 36183
HgeneTgene
Gene symbol

SSR1

SSR1

Gene ID

6745

6745

Gene namesignal sequence receptor subunit 1signal sequence receptor subunit 1
SynonymsTRAPATRAPA
Cytomap

6p24.3

6p24.3

Type of geneprotein-codingprotein-coding
Descriptiontranslocon-associated protein subunit alphaSSR alpha subunitSSR-alphaTRAP alphasignal sequence receptor subunit alphasignal sequence receptor, alphatranslocon-associated protein alpha subunittranslocon-associated protein subunit alphaSSR alpha subunitSSR-alphaTRAP alphasignal sequence receptor subunit alphasignal sequence receptor, alphatranslocon-associated protein alpha subunit
Modification date2018052320180523
UniProtAcc

P43307

P43307

Ensembl transtripts involved in fusion geneENST00000488834, ENST00000474597, 
ENST00000244763, ENST00000397511, 
ENST00000534851, ENST00000489567, 
ENST00000479365, ENST00000462112, 
ENST00000488834, ENST00000474597, 
ENST00000244763, ENST00000397511, 
ENST00000534851, ENST00000489567, 
ENST00000479365, ENST00000462112, 
Fusion gene scores* DoF score10 X 11 X 4=4405 X 6 X 3=90
# samples 116
** MAII scorelog2(11/440*10)=-2
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(6/90*10)=-0.584962500721156
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SSR1 [Title/Abstract] AND SSR1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BM728644SSR1chr6

7283872

-SSR1chr6

7285680

-
ChiTaRS3.1AK025753SSR1chr6

7284071

-SSR1chr6

7286878

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000488834ENST00000488834SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000488834ENST00000474597SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-3UTRENST00000488834ENST00000244763SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000488834ENST00000397511SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000488834ENST00000534851SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000488834ENST00000489567SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000488834ENST00000479365SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000488834ENST00000462112SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000474597ENST00000488834SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000474597ENST00000474597SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-3UTRENST00000474597ENST00000244763SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000474597ENST00000397511SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000474597ENST00000534851SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000474597ENST00000489567SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000474597ENST00000479365SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000474597ENST00000462112SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000244763ENST00000488834SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000244763ENST00000474597SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-3UTRENST00000244763ENST00000244763SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000244763ENST00000397511SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000244763ENST00000534851SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000244763ENST00000489567SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000244763ENST00000479365SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000244763ENST00000462112SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000397511ENST00000488834SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000397511ENST00000474597SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-3UTRENST00000397511ENST00000244763SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000397511ENST00000397511SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000397511ENST00000534851SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000397511ENST00000489567SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000397511ENST00000479365SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000397511ENST00000462112SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000534851ENST00000488834SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000534851ENST00000474597SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-3UTRENST00000534851ENST00000244763SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000534851ENST00000397511SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000534851ENST00000534851SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000534851ENST00000489567SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000534851ENST00000479365SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000534851ENST00000462112SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000489567ENST00000488834SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000489567ENST00000474597SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-3UTRENST00000489567ENST00000244763SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000489567ENST00000397511SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000489567ENST00000534851SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000489567ENST00000489567SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000489567ENST00000479365SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000489567ENST00000462112SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000479365ENST00000488834SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000479365ENST00000474597SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-3UTRENST00000479365ENST00000244763SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000479365ENST00000397511SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000479365ENST00000534851SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000479365ENST00000489567SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000479365ENST00000479365SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000479365ENST00000462112SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000462112ENST00000488834SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000462112ENST00000474597SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-3UTRENST00000462112ENST00000244763SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000462112ENST00000397511SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000462112ENST00000534851SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000462112ENST00000489567SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000462112ENST00000479365SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000462112ENST00000462112SSR1chr6

7283872

-SSR1chr6

7285680

-
intron-intronENST00000488834ENST00000488834SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000488834ENST00000474597SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-3UTRENST00000488834ENST00000244763SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000488834ENST00000397511SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000488834ENST00000534851SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000488834ENST00000489567SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000488834ENST00000479365SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000488834ENST00000462112SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000474597ENST00000488834SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000474597ENST00000474597SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-3UTRENST00000474597ENST00000244763SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000474597ENST00000397511SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000474597ENST00000534851SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000474597ENST00000489567SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000474597ENST00000479365SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000474597ENST00000462112SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000244763ENST00000488834SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000244763ENST00000474597SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-3UTRENST00000244763ENST00000244763SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000244763ENST00000397511SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000244763ENST00000534851SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000244763ENST00000489567SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000244763ENST00000479365SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000244763ENST00000462112SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000397511ENST00000488834SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000397511ENST00000474597SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-3UTRENST00000397511ENST00000244763SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000397511ENST00000397511SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000397511ENST00000534851SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000397511ENST00000489567SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000397511ENST00000479365SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000397511ENST00000462112SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000534851ENST00000488834SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000534851ENST00000474597SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-3UTRENST00000534851ENST00000244763SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000534851ENST00000397511SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000534851ENST00000534851SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000534851ENST00000489567SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000534851ENST00000479365SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000534851ENST00000462112SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000489567ENST00000488834SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000489567ENST00000474597SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-3UTRENST00000489567ENST00000244763SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000489567ENST00000397511SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000489567ENST00000534851SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000489567ENST00000489567SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000489567ENST00000479365SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000489567ENST00000462112SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000479365ENST00000488834SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000479365ENST00000474597SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-3UTRENST00000479365ENST00000244763SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000479365ENST00000397511SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000479365ENST00000534851SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000479365ENST00000489567SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000479365ENST00000479365SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000479365ENST00000462112SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000462112ENST00000488834SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000462112ENST00000474597SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-3UTRENST00000462112ENST00000244763SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000462112ENST00000397511SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000462112ENST00000534851SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000462112ENST00000489567SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000462112ENST00000479365SSR1chr6

7284071

-SSR1chr6

7286878

-
intron-intronENST00000462112ENST00000462112SSR1chr6

7284071

-SSR1chr6

7286878

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Top

FusionProtFeatures for SSR1_SSR1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
SSR1

P43307

SSR1

P43307


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for SSR1_SSR1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for SSR1_SSR1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for SSR1_SSR1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for SSR1_SSR1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource