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Fusion gene ID: 35937 |
FusionGeneSummary for SREBF1_MED9 |
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Fusion gene information | Fusion gene name: SREBF1_MED9 | Fusion gene ID: 35937 | Hgene | Tgene | Gene symbol | SREBF1 | MED9 | Gene ID | 6720 | 55090 |
Gene name | sterol regulatory element binding transcription factor 1 | mediator complex subunit 9 | |
Synonyms | SREBP1|bHLHd1 | MED25 | |
Cytomap | 17p11.2 | 17p11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | sterol regulatory element-binding protein 1class D basic helix-loop-helix protein 1 | mediator of RNA polymerase II transcription subunit 9mediator of RNA polymerase II transcription, subunit 9 homologmediator subunit 25 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | P36956 | Q9NWA0 | |
Ensembl transtripts involved in fusion gene | ENST00000338854, ENST00000395757, ENST00000355815, ENST00000261646, ENST00000435530, ENST00000583732, | ENST00000268711, ENST00000580462, ENST00000585041, | |
Fusion gene scores | * DoF score | 6 X 3 X 6=108 | 3 X 1 X 2=6 |
# samples | 6 | 2 | |
** MAII score | log2(6/108*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/6*10)=1.73696559416621 | |
Context | PubMed: SREBF1 [Title/Abstract] AND MED9 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SREBF1 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 26437365 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-K4-A5RH-01A | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000338854 | ENST00000268711 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
5CDS-intron | ENST00000338854 | ENST00000580462 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
5CDS-intron | ENST00000338854 | ENST00000585041 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
intron-3CDS | ENST00000395757 | ENST00000268711 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
intron-intron | ENST00000395757 | ENST00000580462 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
intron-intron | ENST00000395757 | ENST00000585041 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
In-frame | ENST00000355815 | ENST00000268711 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
5CDS-intron | ENST00000355815 | ENST00000580462 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
5CDS-intron | ENST00000355815 | ENST00000585041 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
In-frame | ENST00000261646 | ENST00000268711 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
5CDS-intron | ENST00000261646 | ENST00000580462 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
5CDS-intron | ENST00000261646 | ENST00000585041 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
In-frame | ENST00000435530 | ENST00000268711 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
5CDS-intron | ENST00000435530 | ENST00000580462 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
5CDS-intron | ENST00000435530 | ENST00000585041 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
intron-3CDS | ENST00000583732 | ENST00000268711 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
intron-intron | ENST00000583732 | ENST00000580462 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
intron-intron | ENST00000583732 | ENST00000585041 | SREBF1 | chr17 | 17740041 | - | MED9 | chr17 | 17394593 | + |
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FusionProtFeatures for SREBF1_MED9 |
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Hgene | Tgene |
SREBF1 | MED9 |
Component of the Mediator complex, a coactivatorinvolved in the regulated transcription of nearly all RNApolymerase II-dependent genes. Mediator functions as a bridge toconvey information from gene-specific regulatory proteins to thebasal RNA polymerase II transcription machinery. Mediator isrecruited to promoters by direct interactions with regulatoryproteins and serves as a scaffold for the assembly of a functionalpreinitiation complex with RNA polymerase II and the generaltranscription factors. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >MED9 | chr17:17740041 | chr17:17394593 | ENST00000268711 | + | 0 | 2 | 112_139 | 74 | 147 | Coiled coil | Ontology_term=ECO:0000255 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 427_462 | 30 | 1148 | Compositional bias | Note=Gly/Pro/Ser-rich |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 61_178 | 30 | 1148 | Compositional bias | Note=Pro/Ser-rich |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 427_462 | 30 | 1072 | Compositional bias | Note=Gly/Pro/Ser-rich |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 61_178 | 30 | 1072 | Compositional bias | Note=Pro/Ser-rich |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 427_462 | 30 | 1178 | Compositional bias | Note=Gly/Pro/Ser-rich |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 61_178 | 30 | 1178 | Compositional bias | Note=Pro/Ser-rich |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 427_462 | 30 | 471 | Compositional bias | Note=Gly/Pro/Ser-rich |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 61_178 | 30 | 471 | Compositional bias | Note=Pro/Ser-rich |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 323_373 | 30 | 1148 | Domain | bHLH |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 323_373 | 30 | 1072 | Domain | bHLH |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 323_373 | 30 | 1178 | Domain | bHLH |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 323_373 | 30 | 471 | Domain | bHLH |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 1_60 | 30 | 1148 | Region | Note=Transcriptional activation (acidic) |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 373_394 | 30 | 1148 | Region | Note=Leucine-zipper |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 1_60 | 30 | 1072 | Region | Note=Transcriptional activation (acidic) |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 373_394 | 30 | 1072 | Region | Note=Leucine-zipper |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 1_60 | 30 | 1178 | Region | Note=Transcriptional activation (acidic) |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 373_394 | 30 | 1178 | Region | Note=Leucine-zipper |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 1_60 | 30 | 471 | Region | Note=Transcriptional activation (acidic) |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 373_394 | 30 | 471 | Region | Note=Leucine-zipper |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 1_487 | 30 | 1148 | Topological domain | Cytoplasmic |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 509_547 | 30 | 1148 | Topological domain | Lumenal |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 569_1147 | 30 | 1148 | Topological domain | Cytoplasmic |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 1_487 | 30 | 1072 | Topological domain | Cytoplasmic |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 509_547 | 30 | 1072 | Topological domain | Lumenal |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 569_1147 | 30 | 1072 | Topological domain | Cytoplasmic |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 1_487 | 30 | 1178 | Topological domain | Cytoplasmic |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 509_547 | 30 | 1178 | Topological domain | Lumenal |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 569_1147 | 30 | 1178 | Topological domain | Cytoplasmic |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 1_487 | 30 | 471 | Topological domain | Cytoplasmic |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 509_547 | 30 | 471 | Topological domain | Lumenal |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 569_1147 | 30 | 471 | Topological domain | Cytoplasmic |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 488_508 | 30 | 1148 | Transmembrane | Helical |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 548_568 | 30 | 1148 | Transmembrane | Helical |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 488_508 | 30 | 1072 | Transmembrane | Helical |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 548_568 | 30 | 1072 | Transmembrane | Helical |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 488_508 | 30 | 1178 | Transmembrane | Helical |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 548_568 | 30 | 1178 | Transmembrane | Helical |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 488_508 | 30 | 471 | Transmembrane | Helical |
Hgene | >SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 548_568 | 30 | 471 | Transmembrane | Helical |
Tgene | MED9 | chr17:17740041 | chr17:17394593 | ENST00000268711 | + | 0 | 2 | 17_54 | 74 | 147 | Compositional bias | Note=Pro-rich |
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FusionGeneSequence for SREBF1_MED9 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SREBF1_ENST00000338854_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_102aa MDEPPFSEAALEQALGEPCDLDAALLTDIEAWTRTARRSTRTXTPSKASSRRCASSSAPCPASTXAPNSSSSSCRASGSKSGPRMSFCKS >In-frame_SREBF1_ENST00000355815_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_102aa MDEPPFSEAALEQALGEPCDLDAALLTDIEAWTRTARRSTRTXTPSKASSRRCASSSAPCPASTXAPNSSSSSCRASGSKSGPRMSFCKS >In-frame_SREBF1_ENST00000261646_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_102aa MDEPPFSEAALEQALGEPCDLDAALLTDIEAWTRTARRSTRTXTPSKASSRRCASSSAPCPASTXAPNSSSSSCRASGSKSGPRMSFCKS >In-frame_SREBF1_ENST00000435530_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_102aa MDEPPFSEAALEQALGEPCDLDAALLTDIEAWTRTARRSTRTXTPSKASSRRCASSSAPCPASTXAPNSSSSSCRASGSKSGPRMSFCKS |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SREBF1_ENST00000338854_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_308nt ATGGACGAGCCACCCTTCAGCGAGGCGGCTTTGGAGCAGGCGCTGGGCGAGCCGTGCGATCTGGACGCGGCGCTGCTGACCGACATCGAA GCATGGACAAGGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGTTCCAGGAGATGCGCAAGCTCATCAGCACCATGC CCGGCATCCACCTGAGCCCCGAACAGCAGCAGCAGCAGCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGAGCTTCTGCAAAAGT >In-frame_SREBF1_ENST00000355815_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_308nt ATGGACGAGCCACCCTTCAGCGAGGCGGCTTTGGAGCAGGCGCTGGGCGAGCCGTGCGATCTGGACGCGGCGCTGCTGACCGACATCGAA GCATGGACAAGGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGTTCCAGGAGATGCGCAAGCTCATCAGCACCATGC CCGGCATCCACCTGAGCCCCGAACAGCAGCAGCAGCAGCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGAGCTTCTGCAAAAGT >In-frame_SREBF1_ENST00000261646_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_308nt ATGGACGAGCCACCCTTCAGCGAGGCGGCTTTGGAGCAGGCGCTGGGCGAGCCGTGCGATCTGGACGCGGCGCTGCTGACCGACATCGAA GCATGGACAAGGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGTTCCAGGAGATGCGCAAGCTCATCAGCACCATGC CCGGCATCCACCTGAGCCCCGAACAGCAGCAGCAGCAGCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGAGCTTCTGCAAAAGT >In-frame_SREBF1_ENST00000435530_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_308nt ATGGACGAGCCACCCTTCAGCGAGGCGGCTTTGGAGCAGGCGCTGGGCGAGCCGTGCGATCTGGACGCGGCGCTGCTGACCGACATCGAA GCATGGACAAGGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGTTCCAGGAGATGCGCAAGCTCATCAGCACCATGC CCGGCATCCACCTGAGCCCCGAACAGCAGCAGCAGCAGCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGAGCTTCTGCAAAAGT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SREBF1_ENST00000338854_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_2233nt AGCAGAGCTGCGGCCGGGGGAACCCAGTTTCCGAGGAACTTTTCGCCGGCGCCGGGCCGCCTCTGAGGCCAGGGCAGGACACGAACGCGC GGAGCGGCGGCGGCGACTGAGAGCCGGGGCCGCGGCGGCGCTCCCTAGGAAGGGCCGTACGAGGCGGCGGGCCCGGCGGGCCTCCCGGAG GAGGCGGCTGCGCCATGGACGAGCCACCCTTCAGCGAGGCGGCTTTGGAGCAGGCGCTGGGCGAGCCGTGCGATCTGGACGCGGCGCTGC TGACCGACATCGAAGCATGGACAAGGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGTTCCAGGAGATGCGCAAGCT CATCAGCACCATGCCCGGCATCCACCTGAGCCCCGAACAGCAGCAGCAGCAGCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGA GCTTCTGCAAAAGTACAAGAGCCTCTGCATGTTCGAAATCCCCAAGGAGTAGAGTGAGGCTGACTTCCTTAGAAAGAGGGGGAAGCCAAT GGCCTGTCTCCCCACTACCATCCCCAAACGCTCCTTGGGGCGTGGTTCCTGTGGACCCCAGCTCAGCTCGTCAAGCTGCAGGGGCGGGGC TCCTGTGCTGCTGCGCGCGCTTCGCCTGTGCGGGAGCCAGCGCAGAGCTTGGCTGCGCCGGGGGTTCCTCGTGTAGATCCATATGTCTAG ATGCATAATAACTGGAGTGCCTGCTGGTGGAAGTCAGAATGCTCCTGGAGGCTGCAGAGGGGGTGGAGGACTCTCCCCTGCCTCTGGGGA GGGGGCCATCTGCTGCGCCCGGCCCCACTGACAGATCTGAAGAGCACAGTAGGAAGGGAGGCGGCTCCTCTTTGCTTCCTTCCCTCTCTC TCCTCCCACCCCCATAGGATCAGTGTGTACCAGGTACACATTGTTCCTGTTAACAGCAGCTTCTTGAAACATTTGCATAGAATTCACTGG ACGAATTAAGCCTGCACTCATATGGCATAGAATTGTGAGAGAATGTTTTGAAAGGCCAGAGGGTGGCCTTTTTCCCCAAACAGTTTGGTT CCTTTTATGTTTGAGCCAGTGAAGGGAACTACGCTTTGGGGGCTTCAGCCTAGAGCCCTGCCAGGCAGCCCCTGGCTCCAGGTTCCCTGC CTCCTAGCGCTCTCCTCGCCTTCAGCTCTTGCTCCCTTCCTCGTTCATCACCCTCAGTCAGTGCCCAAGAGTGGCCAAACCGCTTCACAT CTGCAGTGCTTCCCCAGGGTTGACAAGGGGCCGTCCTTTCCACACAGGCCAGAAGAGGTCTTCAGGCGAACCGACCTTCCCCCTTCTGGC ATTTCAGATTCCCCTTGCTCTGGTTAAAAGGTCTTTCCCTCGTGGCCTTTGCACTTGCGGCAGCAACGTGTACTACACTGCAGAAGGGTT CAGTATGCACCTTGTGTTGAGAGAGAGGCAACCCTGGGGGCCAGTTCAGGTGGTCCCCAACCATAAGCTAGGTCTGAAAGTTACACAGCC AAGTTTGAGCTCTTAAAAGTTGATGAACAGCCTCATTTCCCCAGCTTCCCTGATTTCTTCCAGATGGGACGTTTTATTTGTGTGCTCTCC CTTGACTGTCAGATTGAAGTAAGAGCAGTTCTCTCCGTTGCCTCTCGAGGAGGAGGTGCGAAGTCCTGGAGTATTGTTTGGGTCTCGGAA TGGGCGCATAACCTGCGCTGACCAGTTTAGGGGCTTAGCAGATGCCTGCCAGCTGACCTCGTTGGCAGGAGGGTTGGGTGGAGATGTTTT TAGCAGAGCTTCCATTAGTGTAGACCTGTAGCCACCTGTCAGAAGGTGGGTGGCATATTGGGGACCTGGGAATGTGTGAAGGAGGAGATC AAATTTCAGTGGCTTTGGACAGAAAAGAAGGCTCTGGATTTAAGCGGGTGGTCACCTGTGAGACCAGGTCTACCTTGGGACTGTTATTTA ACTGAATCAGTTATTTCCTTGAAATTTCACAGTAGTGGGTGGGCCTGTTTTAAGGCTCTGACAGATACCACGAAACATGAAGCACGTGGA ACTACAAGACCCCCGGGGTCTTTCTGAGTGCAAGGCTGAAATGGACAAGGGCTCCTCACGGGGGTGGAGGGAGCCGGAGCCTGCCTTGTG >In-frame_SREBF1_ENST00000355815_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_2209nt CAGTTTCCGAGGAACTTTTCGCCGGCGCCGGGCCGCCTCTGAGGCCAGGGCAGGACACGAACGCGCGGAGCGGCGGCGGCGACTGAGAGC CGGGGCCGCGGCGGCGCTCCCTAGGAAGGGCCGTACGAGGCGGCGGGCCCGGCGGGCCTCCCGGAGGAGGCGGCTGCGCCATGGACGAGC CACCCTTCAGCGAGGCGGCTTTGGAGCAGGCGCTGGGCGAGCCGTGCGATCTGGACGCGGCGCTGCTGACCGACATCGAAGCATGGACAA GGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGTTCCAGGAGATGCGCAAGCTCATCAGCACCATGCCCGGCATCCA CCTGAGCCCCGAACAGCAGCAGCAGCAGCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGAGCTTCTGCAAAAGTACAAGAGCCT CTGCATGTTCGAAATCCCCAAGGAGTAGAGTGAGGCTGACTTCCTTAGAAAGAGGGGGAAGCCAATGGCCTGTCTCCCCACTACCATCCC CAAACGCTCCTTGGGGCGTGGTTCCTGTGGACCCCAGCTCAGCTCGTCAAGCTGCAGGGGCGGGGCTCCTGTGCTGCTGCGCGCGCTTCG CCTGTGCGGGAGCCAGCGCAGAGCTTGGCTGCGCCGGGGGTTCCTCGTGTAGATCCATATGTCTAGATGCATAATAACTGGAGTGCCTGC TGGTGGAAGTCAGAATGCTCCTGGAGGCTGCAGAGGGGGTGGAGGACTCTCCCCTGCCTCTGGGGAGGGGGCCATCTGCTGCGCCCGGCC CCACTGACAGATCTGAAGAGCACAGTAGGAAGGGAGGCGGCTCCTCTTTGCTTCCTTCCCTCTCTCTCCTCCCACCCCCATAGGATCAGT GTGTACCAGGTACACATTGTTCCTGTTAACAGCAGCTTCTTGAAACATTTGCATAGAATTCACTGGACGAATTAAGCCTGCACTCATATG GCATAGAATTGTGAGAGAATGTTTTGAAAGGCCAGAGGGTGGCCTTTTTCCCCAAACAGTTTGGTTCCTTTTATGTTTGAGCCAGTGAAG GGAACTACGCTTTGGGGGCTTCAGCCTAGAGCCCTGCCAGGCAGCCCCTGGCTCCAGGTTCCCTGCCTCCTAGCGCTCTCCTCGCCTTCA GCTCTTGCTCCCTTCCTCGTTCATCACCCTCAGTCAGTGCCCAAGAGTGGCCAAACCGCTTCACATCTGCAGTGCTTCCCCAGGGTTGAC AAGGGGCCGTCCTTTCCACACAGGCCAGAAGAGGTCTTCAGGCGAACCGACCTTCCCCCTTCTGGCATTTCAGATTCCCCTTGCTCTGGT TAAAAGGTCTTTCCCTCGTGGCCTTTGCACTTGCGGCAGCAACGTGTACTACACTGCAGAAGGGTTCAGTATGCACCTTGTGTTGAGAGA GAGGCAACCCTGGGGGCCAGTTCAGGTGGTCCCCAACCATAAGCTAGGTCTGAAAGTTACACAGCCAAGTTTGAGCTCTTAAAAGTTGAT GAACAGCCTCATTTCCCCAGCTTCCCTGATTTCTTCCAGATGGGACGTTTTATTTGTGTGCTCTCCCTTGACTGTCAGATTGAAGTAAGA GCAGTTCTCTCCGTTGCCTCTCGAGGAGGAGGTGCGAAGTCCTGGAGTATTGTTTGGGTCTCGGAATGGGCGCATAACCTGCGCTGACCA GTTTAGGGGCTTAGCAGATGCCTGCCAGCTGACCTCGTTGGCAGGAGGGTTGGGTGGAGATGTTTTTAGCAGAGCTTCCATTAGTGTAGA CCTGTAGCCACCTGTCAGAAGGTGGGTGGCATATTGGGGACCTGGGAATGTGTGAAGGAGGAGATCAAATTTCAGTGGCTTTGGACAGAA AAGAAGGCTCTGGATTTAAGCGGGTGGTCACCTGTGAGACCAGGTCTACCTTGGGACTGTTATTTAACTGAATCAGTTATTTCCTTGAAA TTTCACAGTAGTGGGTGGGCCTGTTTTAAGGCTCTGACAGATACCACGAAACATGAAGCACGTGGAACTACAAGACCCCCGGGGTCTTTC TGAGTGCAAGGCTGAAATGGACAAGGGCTCCTCACGGGGGTGGAGGGAGCCGGAGCCTGCCTTGTGTTCCTTTTTTGACTTGTGACATTT >In-frame_SREBF1_ENST00000261646_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_2224nt GCGGCCGGGGGAACCCAGTTTCCGAGGAACTTTTCGCCGGCGCCGGGCCGCCTCTGAGGCCAGGGCAGGACACGAACGCGCGGAGCGGCG GCGGCGACTGAGAGCCGGGGCCGCGGCGGCGCTCCCTAGGAAGGGCCGTACGAGGCGGCGGGCCCGGCGGGCCTCCCGGAGGAGGCGGCT GCGCCATGGACGAGCCACCCTTCAGCGAGGCGGCTTTGGAGCAGGCGCTGGGCGAGCCGTGCGATCTGGACGCGGCGCTGCTGACCGACA TCGAAGCATGGACAAGGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGTTCCAGGAGATGCGCAAGCTCATCAGCAC CATGCCCGGCATCCACCTGAGCCCCGAACAGCAGCAGCAGCAGCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGAGCTTCTGCA AAAGTACAAGAGCCTCTGCATGTTCGAAATCCCCAAGGAGTAGAGTGAGGCTGACTTCCTTAGAAAGAGGGGGAAGCCAATGGCCTGTCT CCCCACTACCATCCCCAAACGCTCCTTGGGGCGTGGTTCCTGTGGACCCCAGCTCAGCTCGTCAAGCTGCAGGGGCGGGGCTCCTGTGCT GCTGCGCGCGCTTCGCCTGTGCGGGAGCCAGCGCAGAGCTTGGCTGCGCCGGGGGTTCCTCGTGTAGATCCATATGTCTAGATGCATAAT AACTGGAGTGCCTGCTGGTGGAAGTCAGAATGCTCCTGGAGGCTGCAGAGGGGGTGGAGGACTCTCCCCTGCCTCTGGGGAGGGGGCCAT CTGCTGCGCCCGGCCCCACTGACAGATCTGAAGAGCACAGTAGGAAGGGAGGCGGCTCCTCTTTGCTTCCTTCCCTCTCTCTCCTCCCAC CCCCATAGGATCAGTGTGTACCAGGTACACATTGTTCCTGTTAACAGCAGCTTCTTGAAACATTTGCATAGAATTCACTGGACGAATTAA GCCTGCACTCATATGGCATAGAATTGTGAGAGAATGTTTTGAAAGGCCAGAGGGTGGCCTTTTTCCCCAAACAGTTTGGTTCCTTTTATG TTTGAGCCAGTGAAGGGAACTACGCTTTGGGGGCTTCAGCCTAGAGCCCTGCCAGGCAGCCCCTGGCTCCAGGTTCCCTGCCTCCTAGCG CTCTCCTCGCCTTCAGCTCTTGCTCCCTTCCTCGTTCATCACCCTCAGTCAGTGCCCAAGAGTGGCCAAACCGCTTCACATCTGCAGTGC TTCCCCAGGGTTGACAAGGGGCCGTCCTTTCCACACAGGCCAGAAGAGGTCTTCAGGCGAACCGACCTTCCCCCTTCTGGCATTTCAGAT TCCCCTTGCTCTGGTTAAAAGGTCTTTCCCTCGTGGCCTTTGCACTTGCGGCAGCAACGTGTACTACACTGCAGAAGGGTTCAGTATGCA CCTTGTGTTGAGAGAGAGGCAACCCTGGGGGCCAGTTCAGGTGGTCCCCAACCATAAGCTAGGTCTGAAAGTTACACAGCCAAGTTTGAG CTCTTAAAAGTTGATGAACAGCCTCATTTCCCCAGCTTCCCTGATTTCTTCCAGATGGGACGTTTTATTTGTGTGCTCTCCCTTGACTGT CAGATTGAAGTAAGAGCAGTTCTCTCCGTTGCCTCTCGAGGAGGAGGTGCGAAGTCCTGGAGTATTGTTTGGGTCTCGGAATGGGCGCAT AACCTGCGCTGACCAGTTTAGGGGCTTAGCAGATGCCTGCCAGCTGACCTCGTTGGCAGGAGGGTTGGGTGGAGATGTTTTTAGCAGAGC TTCCATTAGTGTAGACCTGTAGCCACCTGTCAGAAGGTGGGTGGCATATTGGGGACCTGGGAATGTGTGAAGGAGGAGATCAAATTTCAG TGGCTTTGGACAGAAAAGAAGGCTCTGGATTTAAGCGGGTGGTCACCTGTGAGACCAGGTCTACCTTGGGACTGTTATTTAACTGAATCA GTTATTTCCTTGAAATTTCACAGTAGTGGGTGGGCCTGTTTTAAGGCTCTGACAGATACCACGAAACATGAAGCACGTGGAACTACAAGA CCCCCGGGGTCTTTCTGAGTGCAAGGCTGAAATGGACAAGGGCTCCTCACGGGGGTGGAGGGAGCCGGAGCCTGCCTTGTGTTCCTTTTT >In-frame_SREBF1_ENST00000435530_chr17_17740041_-_MED9_ENST00000268711_chr17_17394593_+_2039nt ATGGACGAGCCACCCTTCAGCGAGGCGGCTTTGGAGCAGGCGCTGGGCGAGCCGTGCGATCTGGACGCGGCGCTGCTGACCGACATCGAA GCATGGACAAGGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGTTCCAGGAGATGCGCAAGCTCATCAGCACCATGC CCGGCATCCACCTGAGCCCCGAACAGCAGCAGCAGCAGCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGAGCTTCTGCAAAAGT ACAAGAGCCTCTGCATGTTCGAAATCCCCAAGGAGTAGAGTGAGGCTGACTTCCTTAGAAAGAGGGGGAAGCCAATGGCCTGTCTCCCCA CTACCATCCCCAAACGCTCCTTGGGGCGTGGTTCCTGTGGACCCCAGCTCAGCTCGTCAAGCTGCAGGGGCGGGGCTCCTGTGCTGCTGC GCGCGCTTCGCCTGTGCGGGAGCCAGCGCAGAGCTTGGCTGCGCCGGGGGTTCCTCGTGTAGATCCATATGTCTAGATGCATAATAACTG GAGTGCCTGCTGGTGGAAGTCAGAATGCTCCTGGAGGCTGCAGAGGGGGTGGAGGACTCTCCCCTGCCTCTGGGGAGGGGGCCATCTGCT GCGCCCGGCCCCACTGACAGATCTGAAGAGCACAGTAGGAAGGGAGGCGGCTCCTCTTTGCTTCCTTCCCTCTCTCTCCTCCCACCCCCA TAGGATCAGTGTGTACCAGGTACACATTGTTCCTGTTAACAGCAGCTTCTTGAAACATTTGCATAGAATTCACTGGACGAATTAAGCCTG CACTCATATGGCATAGAATTGTGAGAGAATGTTTTGAAAGGCCAGAGGGTGGCCTTTTTCCCCAAACAGTTTGGTTCCTTTTATGTTTGA GCCAGTGAAGGGAACTACGCTTTGGGGGCTTCAGCCTAGAGCCCTGCCAGGCAGCCCCTGGCTCCAGGTTCCCTGCCTCCTAGCGCTCTC CTCGCCTTCAGCTCTTGCTCCCTTCCTCGTTCATCACCCTCAGTCAGTGCCCAAGAGTGGCCAAACCGCTTCACATCTGCAGTGCTTCCC CAGGGTTGACAAGGGGCCGTCCTTTCCACACAGGCCAGAAGAGGTCTTCAGGCGAACCGACCTTCCCCCTTCTGGCATTTCAGATTCCCC TTGCTCTGGTTAAAAGGTCTTTCCCTCGTGGCCTTTGCACTTGCGGCAGCAACGTGTACTACACTGCAGAAGGGTTCAGTATGCACCTTG TGTTGAGAGAGAGGCAACCCTGGGGGCCAGTTCAGGTGGTCCCCAACCATAAGCTAGGTCTGAAAGTTACACAGCCAAGTTTGAGCTCTT AAAAGTTGATGAACAGCCTCATTTCCCCAGCTTCCCTGATTTCTTCCAGATGGGACGTTTTATTTGTGTGCTCTCCCTTGACTGTCAGAT TGAAGTAAGAGCAGTTCTCTCCGTTGCCTCTCGAGGAGGAGGTGCGAAGTCCTGGAGTATTGTTTGGGTCTCGGAATGGGCGCATAACCT GCGCTGACCAGTTTAGGGGCTTAGCAGATGCCTGCCAGCTGACCTCGTTGGCAGGAGGGTTGGGTGGAGATGTTTTTAGCAGAGCTTCCA TTAGTGTAGACCTGTAGCCACCTGTCAGAAGGTGGGTGGCATATTGGGGACCTGGGAATGTGTGAAGGAGGAGATCAAATTTCAGTGGCT TTGGACAGAAAAGAAGGCTCTGGATTTAAGCGGGTGGTCACCTGTGAGACCAGGTCTACCTTGGGACTGTTATTTAACTGAATCAGTTAT TTCCTTGAAATTTCACAGTAGTGGGTGGGCCTGTTTTAAGGCTCTGACAGATACCACGAAACATGAAGCACGTGGAACTACAAGACCCCC GGGGTCTTTCTGAGTGCAAGGCTGAAATGGACAAGGGCTCCTCACGGGGGTGGAGGGAGCCGGAGCCTGCCTTGTGTTCCTTTTTTGACT |
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FusionGenePPI for SREBF1_MED9 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SREBF1 | LMNA, TWIST2, UBE2I, CREBBP, YY1, SP1, NR0B1, MAPK3, MAPK1, FBXW7, KLF13, EP300, AR, MED15, MED23, MED7, MED13, MED12, MED1, MED14, MED24, MED26, MED6, HNF4A, TRRAP, KAT2A, ATM, GCN1L1, TADA2B, TADA3, RUVBL2, SIRT1, MED25, MED17, MED21, CDK8, USF1, GSK3B, ZBTB7C, SREBF2, SREBF1, ZBTB7A, SCAP, INSIG1, INSIG2, EGF, ATXN1, ATXN1L, HSP90AA1, SMARCD3, ERLIN2, KLF5, ID2, ID3, PRMT5, PVALB, SORL1, MTNR1B, PLK1, TRIM25, POLR2A | MED9 | MED10, MED13L, MED13, MED12, MED14, MED23, MED15, MED24, MED16, MED25, MED17, MED26, CDK8, CDK19, MED27, MED4, MED19, MED6, MED7, MED8, MED18, MED20, MED29, MED30, MED28, MED21, MED22, MED11, MED31, MED1, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2J, ZC3H13, OBFC1, APP, FBXW7, ESR1, CCNC, NRGN, TCL1B, SPAG9, CARM1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000261646 | - | 1 | 19 | 234_497 | 30 | 1148 | LMNA |
Hgene | SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000338854 | - | 1 | 19 | 234_497 | 30 | 1072 | LMNA |
Hgene | SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000355815 | - | 1 | 20 | 234_497 | 30 | 1178 | LMNA |
Hgene | SREBF1 | chr17:17740041 | chr17:17394593 | ENST00000435530 | - | 1 | 8 | 234_497 | 30 | 471 | LMNA |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SREBF1_MED9 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SREBF1_MED9 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SREBF1 | C0011853 | Diabetes Mellitus, Experimental | 2 | CTD_human |
Hgene | SREBF1 | C0400966 | Non-alcoholic Fatty Liver Disease | 2 | CTD_human |
Hgene | SREBF1 | C2239176 | Liver carcinoma | 2 | CTD_human |
Hgene | SREBF1 | C0015695 | Fatty Liver | 1 | CTD_human |
Hgene | SREBF1 | C0021655 | Insulin Resistance | 1 | CTD_human |
Hgene | SREBF1 | C0022661 | Kidney Failure, Chronic | 1 | CTD_human |
Hgene | SREBF1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Hgene | SREBF1 | C0028754 | Obesity | 1 | CTD_human |
Hgene | SREBF1 | C0036341 | Schizophrenia | 1 | PSYGENET |