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Fusion gene ID: 35642 |
FusionGeneSummary for SPEN_C1orf64 |
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Fusion gene information | Fusion gene name: SPEN_C1orf64 | Fusion gene ID: 35642 | Hgene | Tgene | Gene symbol | SPEN | C1orf64 | Gene ID | 64783 |
Gene name | RNA binding motif protein 15 | ||
Synonyms | OTT|OTT1|SPEN | ||
Cytomap | 1p13.3 | ||
Type of gene | protein-coding | ||
Description | putative RNA-binding protein 15one twenty two proteinone twenty-twoone-twenty two protein 1 | ||
Modification date | 20180523 | ||
UniProtAcc | Q96T58 | ||
Ensembl transtripts involved in fusion gene | ENST00000375759, ENST00000471538, | ENST00000329454, | |
Fusion gene scores | * DoF score | 15 X 10 X 12=1800 | 1 X 1 X 1=1 |
# samples | 22 | 1 | |
** MAII score | log2(22/1800*10)=-3.03242147769238 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: SPEN [Title/Abstract] AND C1orf64 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SPEN | GO:0045892 | negative regulation of transcription, DNA-templated | 16129689 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | HNSC | TCGA-CN-6024-01A | SPEN | chr1 | 16174645 | + | C1orf64 | chr1 | 16332414 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000375759 | ENST00000329454 | SPEN | chr1 | 16174645 | + | C1orf64 | chr1 | 16332414 | + |
intron-3CDS | ENST00000471538 | ENST00000329454 | SPEN | chr1 | 16174645 | + | C1orf64 | chr1 | 16332414 | + |
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FusionProtFeatures for SPEN_C1orf64 |
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Hgene | Tgene |
SPEN | C1orf64 |
May serve as a nuclear matrix platform that organizesand integrates transcriptional responses. In osteoblasts, supportstranscription activation: synergizes with RUNX2 to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element(OCFRE) (By similarity). Has also been shown to be an essentialcorepressor protein, which probably regulates different keypathways such as the Notch pathway. Negative regulator of theNotch pathway via its interaction with RBPSUH, which prevents theassociation between NOTCH1 and RBPSUH, and therefore suppressesthe transactivation activity of Notch signaling. Blocks thedifferentiation of precursor B-cells into marginal zone B-cells.Probably represses transcription via the recruitment of largecomplexes containing histone deacetylase proteins. May bind bothto DNA and RNA. {ECO:0000250, ECO:0000269|PubMed:11331609,ECO:0000269|PubMed:12374742}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 1170_1191 | 27 | 3665 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 1408_1428 | 27 | 3665 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 1496_1529 | 27 | 3665 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 1592_1612 | 27 | 3665 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 1928_1944 | 27 | 3665 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 688_715 | 27 | 3665 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 977_1004 | 27 | 3665 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 125_277 | 27 | 3665 | Compositional bias | Note=Arg-rich |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 240_325 | 27 | 3665 | Compositional bias | Note=Ser-rich |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 2428_2520 | 27 | 3665 | Compositional bias | Note=Pro-rich |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 3220_3482 | 27 | 3665 | Compositional bias | Note=Pro-rich |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 616_810 | 27 | 3665 | Compositional bias | Note=Arg-rich |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 624_697 | 27 | 3665 | Compositional bias | Note=Tyr-rich |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 1_573 | 27 | 3665 | DNA binding | Ontology_term=ECO:0000250 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 2201_2707 | 27 | 3665 | Domain | Note=RID |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 335_415 | 27 | 3665 | Domain | RRM 2 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 3498_3664 | 27 | 3665 | Domain | SPOC |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 438_513 | 27 | 3665 | Domain | RRM 3 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 517_589 | 27 | 3665 | Domain | RRM 4 |
Hgene | >SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 6_81 | 27 | 3665 | Domain | RRM 1 |
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FusionGeneSequence for SPEN_C1orf64 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SPEN_ENST00000375759_chr1_16174645_+_C1orf64_ENST00000329454_chr1_16332414_+_170aa MVRETRHLWVGNLPENVREEKIIEHFKRWEAGWPSEDRPHGSPDFCYXLHPREAALPGSNRITTPSPQSQSRACHPTNEDLHRVLWGKLA |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SPEN_ENST00000375759_chr1_16174645_+_C1orf64_ENST00000329454_chr1_16332414_+_511nt ATGGTCCGGGAAACCAGGCATCTCTGGGTGGGCAACTTACCCGAGAACGTGCGGGAAGAGAAGATCATCGAGCATTTCAAACGGTGGGAA GCTGGCTGGCCATCAGAAGACCGTCCCCACGGCTCACCTGACTTTTGTTATTGACTGCACCCACGGGAAGCAGCTCTCCCTGGCAGCAAC CGCATCACCACCCCAAGCCCCCAGTCCCAATCGAGGGCTTGTCACCCCACCAATGAAGACCTACATCGTGTTCTGTGGGGAAAACTGGCC CCATCTGACTCGGGTGACCCCCATGGGTGGGGGATGCCTTGCCCAGGCCAGGGCCACCCTGCCGCTCTGCAGAGGGTCTGTGGCCTCAGC TTCCTTCCCAGTCAGCCCGCTCTGCCCCCAGGAGGTTCCCGAGGCTAAGGGGAAACCCGTGAAGGCTGCGCCTGTGAGGTCTTCAACTTG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SPEN_ENST00000375759_chr1_16174645_+_C1orf64_ENST00000329454_chr1_16332414_+_3176nt TGAGCTGCGAGGCCCGAGAGTCAGAACCTGGGGGAGAGGGATGGTCTCTGCACGGGGGGGAGCCGGAGGAGCCGCCGCCGCTGCCGACGC CACCGCCGCAGCCGCCGCCGCCGCCGCCCCGGCACCCGCCTCCCGGCGCTGACGGTCTCGTACGAAGCCGGCGAGGGGGAGCCAGCAGCG GCGGTCGCCGGCACGCCGCCCAGCATGGTCCGGGAAACCAGGCATCTCTGGGTGGGCAACTTACCCGAGAACGTGCGGGAAGAGAAGATC ATCGAGCATTTCAAACGGTGGGAAGCTGGCTGGCCATCAGAAGACCGTCCCCACGGCTCACCTGACTTTTGTTATTGACTGCACCCACGG GAAGCAGCTCTCCCTGGCAGCAACCGCATCACCACCCCAAGCCCCCAGTCCCAATCGAGGGCTTGTCACCCCACCAATGAAGACCTACAT CGTGTTCTGTGGGGAAAACTGGCCCCATCTGACTCGGGTGACCCCCATGGGTGGGGGATGCCTTGCCCAGGCCAGGGCCACCCTGCCGCT CTGCAGAGGGTCTGTGGCCTCAGCTTCCTTCCCAGTCAGCCCGCTCTGCCCCCAGGAGGTTCCCGAGGCTAAGGGGAAACCCGTGAAGGC TGCGCCTGTGAGGTCTTCAACTTGGGGAACAGTCAAGGACTCACTGAAAGCCCTCTCCTCTTGTGTCTGTGGGCAGGCCGATTAGCTGGA AGGGCCGGGCTCTGATGCCCAGAGGCTGCAATTCCCAGGGCCTGGCCCTGCTTCCCCAGCTAAGCAGGAGTCTTTTGTGCTTGAGCCAAG GAAACATCATTAGATCCGCTAAGGGGCATCTGAAACATCCGTCGAGTGGCAGAGGCAGGATAAGTCACCTGCACATGAAGAGACTCATTC ATTCATACAGCAAATATTACTGGTACATCTTCCACATGCCAGGCCCTGCAAAGTGCTGGGGAGATACCATGGTTTTCCTGGAGCTGGTAT TTTTGGGGTGGAGGGAACCCACCCTGAATAAATAAAGTAACCCAATAAATAAAGAAGATGATTTTGAACAGCGATGAATGCTCTGCAGGA ACTGAAACAGGATGCTAGAGGGAGAGTGATTGGGGTGAAGACCTTTCCTGATGCAGTGCTTGGTAAGGGCCTCTCTGCGCAGGCAACAAA GTGTGATCTAAAAGATGAGAAGGGGCCAGCCCTGAGAAAATCCACCCTCCCCAGGGCCACCTGCTGTCATCTTACCCCAGGGCAGGCCAG AGCAGTGGTCAGAATGCCCCAGCATGACGGGGAGGGGCAACGGGTTTCTTGCTGCCATCTTGGCTCAGAGGCGAGTGTGTAGGTCACTGC AAAGGCAGGGGATACCACGTGGGGAGACTCGAGGGCCATGCCAGTTGGGGCTGGGAGGCTCAGGGAAGTTGGCTCCAGGAGACTCCATCC CATAAGGCAGCCCAGGTGGGACCTGGGGATCTGAGATGGGAAATAAGGGGATCTGGCTTCTCAAAAGGGAGGGAGGTACTCAAAAATAGA GTATCATGTTTGAACGAATGAAAACAAGACATGTTATTTATTGAGCATCTACTGCATACCAGGCTCATGCTGCCCTCTAGGGATAGCAAA AAAAAAAAAAAAAGGTGGGGGGAGGAGGTTCACCCCTCAGGGCAATCGTGTTCCCTGAGCAGGAGGTGGAGTTACTGGTGTGGGTGTGAA GGTGTCTGTGAGTCTAAGGCATGCACAGCACTGTGAGAAACCCTAAAGCAACCTATTTAAGGAAGTCAGTCTCAAAGCTCCCAGATAAAA ATCACTGGGTTTTTCTGTATTTATTTTAGAGACAGAGTCTCACTCTATCACCCAGGCTGGAGTGCAGTGGAACAATCACAGCTCACTGCA GCCTCAAACTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGAGACTATAGGTGCACCACTACGCCCAGCTTGACTTC TTTTAGTAGAGAAGAGGTCTCACTGTGCTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGCTATCCTCCCGCTTCAGCTTCCCTAAGTG CTTGGATTATAGGTGTGAGCCACCGTATCTGGTCATTAATTTATTCAATGACTATTTTACTAGGTTCCTACAAATACTAGCTGCTAACAT TTAACATGTAATTGACCATTTACTCTGTGTCAGAGAAACAACATGGGCACTGTATTTGTGACCATTTTATAGATTAGAGAGCTGAGGCAC AGAGAGGTTGAAGAATGGACTCAAAGTTCCATAGACTGGTACCATTGAGATTAGAACTCAGGCAAGTCTGGTGCCCATATTCTTGCTTGT AACTGTAAGGTATATACCCTCTCATCCTGGTAGCGTCTCTTCTAGGCAGAGGGGACACACAGAGGATAAATGTAACCCTGTCCTCAAGGA GCTCACAGCCAGGTGGGGGAGGCCAGAAAGAAAGCACACAATTGCCATAGCTTCTGAGAAGTGCAACAGTAAGGGCAACACAGAATGATG CTGGAGGACAACCAGCCCACTCTAGAGAGAGGAGATCAGGGAGGACTTCCTGCAGGAAGTGATGCCGAAAATGAGATCTGACCGGTGACT AAGCTATACAAAAGGGTGGGGTGGGGGAGCAAGTGGGGAGTGCTCTGGGCAGAAGGACCAGTCGTTCAGTCTGGCTAGGGTAATTGTCAT TCATTCATTTATTCACCAAGTATTTATTGGGCATCCACTGAATGCCAGGCTTTGGGCTAAACCATGAGATGGAGCAATGAATAAGACAAT GAGGCCCAGCCACAAAATAGTTTATCCTCTAGTTGGGGGAGACAGGCAATGCACACACACAAAACAAACAGATCAGAAAGGTGGCAGGAG GCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGAGGGGGAGGCGGGGGGAGATCACCTGAGGTCAGGAGTTC GAGACCAGCCTGGCCAACTTGGCGAAAACCCGTCTCTACTAAAAATATAAAAATTAGCTGGGCGTGGTGGTGGGCACCTATAATCCCAGC TACTTGGGAAGCTGAGGTGAGAGAATTGCTTGAACCTAGAAGGCAGAGGTTGCAGTGAGCCGAGATCTCGCCACTGCACTCCGGCCTGGG |
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FusionGenePPI for SPEN_C1orf64 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SPEN | NCOR2, PPARD, HDAC1, SRA1, RBPJ, NCOR1, CTBP1, RBBP8, RUNX1T1, RUNX1, SIRT7, UBE2E2, UBE2L6, ATXN1, NOTCH2, BPGM, TTN, PRDX3, PCBP3, NUP54, PIR, SCYL2, SOX2, HRSP12, SERTAD1, CUL7, OBSL1, EED, BMI1, CCNC, WRAP73, MED23, SRPK2, CLK1, DYNLT1, BCLAF1, FERMT3, USP37, DPPA4, EGFR, TRIML2, CAMKV, PIP4K2A, NR3C1 | C1orf64 | APP, SLC4A2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 2130_2464 | 27 | 3665 | MSX2 |
Hgene | SPEN | chr1:16174645 | chr1:16332414 | ENST00000375759 | + | 1 | 15 | 2709_2870 | 27 | 3665 | RBPSUH |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SPEN_C1orf64 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SPEN_C1orf64 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |