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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 35642

FusionGeneSummary for SPEN_C1orf64

check button Fusion gene summary
Fusion gene informationFusion gene name: SPEN_C1orf64
Fusion gene ID: 35642
HgeneTgene
Gene symbol

SPEN

C1orf64

Gene ID

64783

Gene nameRNA binding motif protein 15
SynonymsOTT|OTT1|SPEN
Cytomap

1p13.3

Type of geneprotein-coding
Descriptionputative RNA-binding protein 15one twenty two proteinone twenty-twoone-twenty two protein 1
Modification date20180523
UniProtAcc

Q96T58

Ensembl transtripts involved in fusion geneENST00000375759, ENST00000471538, 
ENST00000329454, 
Fusion gene scores* DoF score15 X 10 X 12=18001 X 1 X 1=1
# samples 221
** MAII scorelog2(22/1800*10)=-3.03242147769238
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: SPEN [Title/Abstract] AND C1orf64 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneSPEN

GO:0045892

negative regulation of transcription, DNA-templated

16129689


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDHNSCTCGA-CN-6024-01ASPENchr1

16174645

+C1orf64chr1

16332414

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000375759ENST00000329454SPENchr1

16174645

+C1orf64chr1

16332414

+
intron-3CDSENST00000471538ENST00000329454SPENchr1

16174645

+C1orf64chr1

16332414

+

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FusionProtFeatures for SPEN_C1orf64


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
SPEN

Q96T58

C1orf64

May serve as a nuclear matrix platform that organizesand integrates transcriptional responses. In osteoblasts, supportstranscription activation: synergizes with RUNX2 to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element(OCFRE) (By similarity). Has also been shown to be an essentialcorepressor protein, which probably regulates different keypathways such as the Notch pathway. Negative regulator of theNotch pathway via its interaction with RBPSUH, which prevents theassociation between NOTCH1 and RBPSUH, and therefore suppressesthe transactivation activity of Notch signaling. Blocks thedifferentiation of precursor B-cells into marginal zone B-cells.Probably represses transcription via the recruitment of largecomplexes containing histone deacetylase proteins. May bind bothto DNA and RNA. {ECO:0000250, ECO:0000269|PubMed:11331609,ECO:0000269|PubMed:12374742}. Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1151170_1191273665Coiled coilOntology_term=ECO:0000255
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1151408_1428273665Coiled coilOntology_term=ECO:0000255
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1151496_1529273665Coiled coilOntology_term=ECO:0000255
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1151592_1612273665Coiled coilOntology_term=ECO:0000255
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1151928_1944273665Coiled coilOntology_term=ECO:0000255
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115688_715273665Coiled coilOntology_term=ECO:0000255
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115977_1004273665Coiled coilOntology_term=ECO:0000255
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115125_277273665Compositional biasNote=Arg-rich
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115240_325273665Compositional biasNote=Ser-rich
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1152428_2520273665Compositional biasNote=Pro-rich
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1153220_3482273665Compositional biasNote=Pro-rich
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115616_810273665Compositional biasNote=Arg-rich
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115624_697273665Compositional biasNote=Tyr-rich
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1151_573273665DNA bindingOntology_term=ECO:0000250
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1152201_2707273665DomainNote=RID
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115335_415273665DomainRRM 2
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1153498_3664273665DomainSPOC
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115438_513273665DomainRRM 3
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+115517_589273665DomainRRM 4
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1156_81273665DomainRRM 1


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FusionGeneSequence for SPEN_C1orf64


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_SPEN_ENST00000375759_chr1_16174645_+_C1orf64_ENST00000329454_chr1_16332414_+_170aa
MVRETRHLWVGNLPENVREEKIIEHFKRWEAGWPSEDRPHGSPDFCYXLHPREAALPGSNRITTPSPQSQSRACHPTNEDLHRVLWGKLA


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_SPEN_ENST00000375759_chr1_16174645_+_C1orf64_ENST00000329454_chr1_16332414_+_511nt
ATGGTCCGGGAAACCAGGCATCTCTGGGTGGGCAACTTACCCGAGAACGTGCGGGAAGAGAAGATCATCGAGCATTTCAAACGGTGGGAA
GCTGGCTGGCCATCAGAAGACCGTCCCCACGGCTCACCTGACTTTTGTTATTGACTGCACCCACGGGAAGCAGCTCTCCCTGGCAGCAAC
CGCATCACCACCCCAAGCCCCCAGTCCCAATCGAGGGCTTGTCACCCCACCAATGAAGACCTACATCGTGTTCTGTGGGGAAAACTGGCC
CCATCTGACTCGGGTGACCCCCATGGGTGGGGGATGCCTTGCCCAGGCCAGGGCCACCCTGCCGCTCTGCAGAGGGTCTGTGGCCTCAGC
TTCCTTCCCAGTCAGCCCGCTCTGCCCCCAGGAGGTTCCCGAGGCTAAGGGGAAACCCGTGAAGGCTGCGCCTGTGAGGTCTTCAACTTG


* Fusion transcript sequences (Full-length transcript).
>In-frame_SPEN_ENST00000375759_chr1_16174645_+_C1orf64_ENST00000329454_chr1_16332414_+_3176nt
TGAGCTGCGAGGCCCGAGAGTCAGAACCTGGGGGAGAGGGATGGTCTCTGCACGGGGGGGAGCCGGAGGAGCCGCCGCCGCTGCCGACGC
CACCGCCGCAGCCGCCGCCGCCGCCGCCCCGGCACCCGCCTCCCGGCGCTGACGGTCTCGTACGAAGCCGGCGAGGGGGAGCCAGCAGCG
GCGGTCGCCGGCACGCCGCCCAGCATGGTCCGGGAAACCAGGCATCTCTGGGTGGGCAACTTACCCGAGAACGTGCGGGAAGAGAAGATC
ATCGAGCATTTCAAACGGTGGGAAGCTGGCTGGCCATCAGAAGACCGTCCCCACGGCTCACCTGACTTTTGTTATTGACTGCACCCACGG
GAAGCAGCTCTCCCTGGCAGCAACCGCATCACCACCCCAAGCCCCCAGTCCCAATCGAGGGCTTGTCACCCCACCAATGAAGACCTACAT
CGTGTTCTGTGGGGAAAACTGGCCCCATCTGACTCGGGTGACCCCCATGGGTGGGGGATGCCTTGCCCAGGCCAGGGCCACCCTGCCGCT
CTGCAGAGGGTCTGTGGCCTCAGCTTCCTTCCCAGTCAGCCCGCTCTGCCCCCAGGAGGTTCCCGAGGCTAAGGGGAAACCCGTGAAGGC
TGCGCCTGTGAGGTCTTCAACTTGGGGAACAGTCAAGGACTCACTGAAAGCCCTCTCCTCTTGTGTCTGTGGGCAGGCCGATTAGCTGGA
AGGGCCGGGCTCTGATGCCCAGAGGCTGCAATTCCCAGGGCCTGGCCCTGCTTCCCCAGCTAAGCAGGAGTCTTTTGTGCTTGAGCCAAG
GAAACATCATTAGATCCGCTAAGGGGCATCTGAAACATCCGTCGAGTGGCAGAGGCAGGATAAGTCACCTGCACATGAAGAGACTCATTC
ATTCATACAGCAAATATTACTGGTACATCTTCCACATGCCAGGCCCTGCAAAGTGCTGGGGAGATACCATGGTTTTCCTGGAGCTGGTAT
TTTTGGGGTGGAGGGAACCCACCCTGAATAAATAAAGTAACCCAATAAATAAAGAAGATGATTTTGAACAGCGATGAATGCTCTGCAGGA
ACTGAAACAGGATGCTAGAGGGAGAGTGATTGGGGTGAAGACCTTTCCTGATGCAGTGCTTGGTAAGGGCCTCTCTGCGCAGGCAACAAA
GTGTGATCTAAAAGATGAGAAGGGGCCAGCCCTGAGAAAATCCACCCTCCCCAGGGCCACCTGCTGTCATCTTACCCCAGGGCAGGCCAG
AGCAGTGGTCAGAATGCCCCAGCATGACGGGGAGGGGCAACGGGTTTCTTGCTGCCATCTTGGCTCAGAGGCGAGTGTGTAGGTCACTGC
AAAGGCAGGGGATACCACGTGGGGAGACTCGAGGGCCATGCCAGTTGGGGCTGGGAGGCTCAGGGAAGTTGGCTCCAGGAGACTCCATCC
CATAAGGCAGCCCAGGTGGGACCTGGGGATCTGAGATGGGAAATAAGGGGATCTGGCTTCTCAAAAGGGAGGGAGGTACTCAAAAATAGA
GTATCATGTTTGAACGAATGAAAACAAGACATGTTATTTATTGAGCATCTACTGCATACCAGGCTCATGCTGCCCTCTAGGGATAGCAAA
AAAAAAAAAAAAAGGTGGGGGGAGGAGGTTCACCCCTCAGGGCAATCGTGTTCCCTGAGCAGGAGGTGGAGTTACTGGTGTGGGTGTGAA
GGTGTCTGTGAGTCTAAGGCATGCACAGCACTGTGAGAAACCCTAAAGCAACCTATTTAAGGAAGTCAGTCTCAAAGCTCCCAGATAAAA
ATCACTGGGTTTTTCTGTATTTATTTTAGAGACAGAGTCTCACTCTATCACCCAGGCTGGAGTGCAGTGGAACAATCACAGCTCACTGCA
GCCTCAAACTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGAGACTATAGGTGCACCACTACGCCCAGCTTGACTTC
TTTTAGTAGAGAAGAGGTCTCACTGTGCTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGCTATCCTCCCGCTTCAGCTTCCCTAAGTG
CTTGGATTATAGGTGTGAGCCACCGTATCTGGTCATTAATTTATTCAATGACTATTTTACTAGGTTCCTACAAATACTAGCTGCTAACAT
TTAACATGTAATTGACCATTTACTCTGTGTCAGAGAAACAACATGGGCACTGTATTTGTGACCATTTTATAGATTAGAGAGCTGAGGCAC
AGAGAGGTTGAAGAATGGACTCAAAGTTCCATAGACTGGTACCATTGAGATTAGAACTCAGGCAAGTCTGGTGCCCATATTCTTGCTTGT
AACTGTAAGGTATATACCCTCTCATCCTGGTAGCGTCTCTTCTAGGCAGAGGGGACACACAGAGGATAAATGTAACCCTGTCCTCAAGGA
GCTCACAGCCAGGTGGGGGAGGCCAGAAAGAAAGCACACAATTGCCATAGCTTCTGAGAAGTGCAACAGTAAGGGCAACACAGAATGATG
CTGGAGGACAACCAGCCCACTCTAGAGAGAGGAGATCAGGGAGGACTTCCTGCAGGAAGTGATGCCGAAAATGAGATCTGACCGGTGACT
AAGCTATACAAAAGGGTGGGGTGGGGGAGCAAGTGGGGAGTGCTCTGGGCAGAAGGACCAGTCGTTCAGTCTGGCTAGGGTAATTGTCAT
TCATTCATTTATTCACCAAGTATTTATTGGGCATCCACTGAATGCCAGGCTTTGGGCTAAACCATGAGATGGAGCAATGAATAAGACAAT
GAGGCCCAGCCACAAAATAGTTTATCCTCTAGTTGGGGGAGACAGGCAATGCACACACACAAAACAAACAGATCAGAAAGGTGGCAGGAG
GCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGAGGGGGAGGCGGGGGGAGATCACCTGAGGTCAGGAGTTC
GAGACCAGCCTGGCCAACTTGGCGAAAACCCGTCTCTACTAAAAATATAAAAATTAGCTGGGCGTGGTGGTGGGCACCTATAATCCCAGC
TACTTGGGAAGCTGAGGTGAGAGAATTGCTTGAACCTAGAAGGCAGAGGTTGCAGTGAGCCGAGATCTCGCCACTGCACTCCGGCCTGGG


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FusionGenePPI for SPEN_C1orf64


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
SPENNCOR2, PPARD, HDAC1, SRA1, RBPJ, NCOR1, CTBP1, RBBP8, RUNX1T1, RUNX1, SIRT7, UBE2E2, UBE2L6, ATXN1, NOTCH2, BPGM, TTN, PRDX3, PCBP3, NUP54, PIR, SCYL2, SOX2, HRSP12, SERTAD1, CUL7, OBSL1, EED, BMI1, CCNC, WRAP73, MED23, SRPK2, CLK1, DYNLT1, BCLAF1, FERMT3, USP37, DPPA4, EGFR, TRIML2, CAMKV, PIP4K2A, NR3C1C1orf64APP, SLC4A2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1152130_2464273665MSX2
HgeneSPENchr1:16174645chr1:16332414ENST00000375759+1152709_2870273665RBPSUH


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for SPEN_C1orf64


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SPEN_C1orf64


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource