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Fusion gene ID: 3557 |
FusionGeneSummary for ATXN10_COL16A1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ATXN10_COL16A1 | Fusion gene ID: 3557 | Hgene | Tgene | Gene symbol | ATXN10 | COL16A1 | Gene ID | 25814 | 1307 |
| Gene name | ataxin 10 | collagen type XVI alpha 1 chain | |
| Synonyms | E46L|HUMEEP|SCA10 | 447AA|FP1572 | |
| Cytomap | 22q13.31 | 1p35.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | ataxin-10brain protein E46 homologspinocerebellar ataxia type 10 protein | collagen alpha-1(XVI) chainalpha 1 type XVI collagencollagen XVI, alpha-1 polypeptidecollagen, type XVI, alpha 1 | |
| Modification date | 20180522 | 20180523 | |
| UniProtAcc | Q9UBB4 | Q07092 | |
| Ensembl transtripts involved in fusion gene | ENST00000381061, ENST00000252934, ENST00000498009, ENST00000402380, | ENST00000271069, ENST00000373672, ENST00000461217, ENST00000373668, | |
| Fusion gene scores | * DoF score | 10 X 4 X 9=360 | 2 X 2 X 2=8 |
| # samples | 10 | 3 | |
| ** MAII score | log2(10/360*10)=-1.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/8*10)=1.90689059560852 | |
| Context | PubMed: ATXN10 [Title/Abstract] AND COL16A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | ATXN10 | GO:0031175 | neuron projection development | 16498633 |
| Tgene | COL16A1 | GO:0007155 | cell adhesion | 16754661 |
| Tgene | COL16A1 | GO:0033622 | integrin activation | 16754661 |
| Tgene | COL16A1 | GO:0033627 | cell adhesion mediated by integrin | 16754661 |
| Tgene | COL16A1 | GO:0051894 | positive regulation of focal adhesion assembly | 24466237 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | THYM | TCGA-X7-A8D9-01A | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000381061 | ENST00000271069 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| Frame-shift | ENST00000381061 | ENST00000373672 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| 5CDS-intron | ENST00000381061 | ENST00000461217 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| 5CDS-intron | ENST00000381061 | ENST00000373668 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| Frame-shift | ENST00000252934 | ENST00000271069 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| Frame-shift | ENST00000252934 | ENST00000373672 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| 5CDS-intron | ENST00000252934 | ENST00000461217 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| 5CDS-intron | ENST00000252934 | ENST00000373668 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| intron-3CDS | ENST00000498009 | ENST00000271069 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| intron-3CDS | ENST00000498009 | ENST00000373672 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| intron-intron | ENST00000498009 | ENST00000461217 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| intron-intron | ENST00000498009 | ENST00000373668 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| intron-3CDS | ENST00000402380 | ENST00000271069 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| intron-3CDS | ENST00000402380 | ENST00000373672 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| intron-intron | ENST00000402380 | ENST00000461217 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
| intron-intron | ENST00000402380 | ENST00000373668 | ATXN10 | chr22 | 46068059 | + | COL16A1 | chr1 | 32158110 | - |
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FusionProtFeatures for ATXN10_COL16A1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ATXN10 | COL16A1 |
| Necessary for the survival of cerebellar neurons.Induces neuritogenesis by activating the Ras-MAP kinase pathway.May play a role in the maintenance of a critical intracellularglycosylation level and homeostasis. {ECO:0000250}. | Involved in mediating cell attachment and inducingintegrin-mediated cellular reactions, such as cell spreading andalterations in cell morphology. {ECO:0000269|PubMed:16754661}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ATXN10_COL16A1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ATXN10_COL16A1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ATXN10 | BSG, STYXL1, MAGED1, GSTK1, CUL3, PPP1R12A, GNB1, GNB2, FN1, MRPS16, GLS, GOLGA1, ABCA1, CA9, VCP, EGFR, SERPINH1, HSPA1A, HSPA8, CCDC8, ABCE1, HTR6, HSPB1, CEP162, CEP152, CEP128, SCLT1, CENPJ, LAMB3, MYC, UBE2A, TUBA1C, MTMR14, DUSP22, PTPRN, STOM, DLD | COL16A1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ATXN10_COL16A1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ATXN10_COL16A1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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