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Fusion gene ID: 35385 |
FusionGeneSummary for SORBS2_CCDC34 |
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Fusion gene information | Fusion gene name: SORBS2_CCDC34 | Fusion gene ID: 35385 | Hgene | Tgene | Gene symbol | SORBS2 | CCDC34 | Gene ID | 8470 | 91057 |
Gene name | sorbin and SH3 domain containing 2 | coiled-coil domain containing 34 | |
Synonyms | ARGBP2|PRO0618 | L15|NY-REN-41|RAMA3 | |
Cytomap | 4q35.1 | 11p14.1 | |
Type of gene | protein-coding | protein-coding | |
Description | sorbin and SH3 domain-containing protein 2Arg binding protein 2Arg/Abl-interacting protein 2arg-binding protein 2 | coiled-coil domain-containing protein 34NY-REN-41 antigenrenal carcinoma antigen NY-REN-41 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | O94875 | Q96HJ3 | |
Ensembl transtripts involved in fusion gene | ENST00000448662, ENST00000431808, ENST00000284776, ENST00000437304, ENST00000319471, ENST00000449407, ENST00000355634, ENST00000393528, ENST00000418609, ENST00000498125, | ENST00000529615, ENST00000328697, ENST00000317945, | |
Fusion gene scores | * DoF score | 14 X 16 X 6=1344 | 2 X 4 X 1=8 |
# samples | 18 | 4 | |
** MAII score | log2(18/1344*10)=-2.90046432644909 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/8*10)=2.32192809488736 | |
Context | PubMed: SORBS2 [Title/Abstract] AND CCDC34 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BM721595 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-5UTR | ENST00000448662 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000448662 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000448662 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000431808 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000431808 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000431808 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000284776 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000284776 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000284776 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000437304 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000437304 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000437304 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000319471 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000319471 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000319471 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000449407 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000449407 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000449407 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000355634 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000355634 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000355634 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000393528 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000393528 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000393528 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000418609 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000418609 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000418609 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000498125 | ENST00000529615 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-5UTR | ENST00000498125 | ENST00000328697 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
intron-intron | ENST00000498125 | ENST00000317945 | SORBS2 | chr4 | 186615839 | - | CCDC34 | chr11 | 27362387 | - |
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FusionProtFeatures for SORBS2_CCDC34 |
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Hgene | Tgene |
SORBS2 | CCDC34 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SORBS2_CCDC34 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SORBS2_CCDC34 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SORBS2_CCDC34 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SORBS2_CCDC34 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SORBS2 | C0043094 | Weight Gain | 1 | CTD_human |