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Fusion gene ID: 35321 |
FusionGeneSummary for SNX5_SLC35C2 |
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Fusion gene information | Fusion gene name: SNX5_SLC35C2 | Fusion gene ID: 35321 | Hgene | Tgene | Gene symbol | SNX5 | SLC35C2 | Gene ID | 27131 | 51006 |
Gene name | sorting nexin 5 | solute carrier family 35 member C2 | |
Synonyms | - | BA394O2.1|C20orf5|CGI-15|OVCOV1 | |
Cytomap | 20p11.23 | 20q13.12 | |
Type of gene | protein-coding | protein-coding | |
Description | sorting nexin-5 | solute carrier family 35 member C2ovarian cancer-overexpressed gene 1 proteinsolute carrier family 35 (GDP-fucose transporter), member C2 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q9Y5X3 | Q9NQQ7 | |
Ensembl transtripts involved in fusion gene | ENST00000483485, ENST00000377759, ENST00000377768, ENST00000606557, ENST00000606602, ENST00000481323, ENST00000486039, | ENST00000493599, ENST00000372227, ENST00000372229, ENST00000372230, ENST00000243896, ENST00000317734, ENST00000543605, | |
Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 1 X 1 X 1=1 |
# samples | 3 | 1 | |
** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: SNX5 [Title/Abstract] AND SLC35C2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SNX5 | GO:0006907 | pinocytosis | 18854019 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DA789110 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000483485 | ENST00000493599 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000483485 | ENST00000372227 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000483485 | ENST00000372229 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000483485 | ENST00000372230 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000483485 | ENST00000243896 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000483485 | ENST00000317734 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000483485 | ENST00000543605 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377759 | ENST00000493599 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377759 | ENST00000372227 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377759 | ENST00000372229 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377759 | ENST00000372230 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377759 | ENST00000243896 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377759 | ENST00000317734 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377759 | ENST00000543605 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377768 | ENST00000493599 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377768 | ENST00000372227 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377768 | ENST00000372229 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377768 | ENST00000372230 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377768 | ENST00000243896 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377768 | ENST00000317734 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000377768 | ENST00000543605 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606557 | ENST00000493599 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606557 | ENST00000372227 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606557 | ENST00000372229 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606557 | ENST00000372230 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606557 | ENST00000243896 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606557 | ENST00000317734 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606557 | ENST00000543605 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606602 | ENST00000493599 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606602 | ENST00000372227 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606602 | ENST00000372229 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606602 | ENST00000372230 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606602 | ENST00000243896 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606602 | ENST00000317734 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000606602 | ENST00000543605 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000481323 | ENST00000493599 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000481323 | ENST00000372227 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000481323 | ENST00000372229 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000481323 | ENST00000372230 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000481323 | ENST00000243896 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000481323 | ENST00000317734 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000481323 | ENST00000543605 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000486039 | ENST00000493599 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000486039 | ENST00000372227 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000486039 | ENST00000372229 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000486039 | ENST00000372230 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000486039 | ENST00000243896 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000486039 | ENST00000317734 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
intron-intron | ENST00000486039 | ENST00000543605 | SNX5 | chr20 | 17943351 | - | SLC35C2 | chr20 | 44993053 | - |
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FusionProtFeatures for SNX5_SLC35C2 |
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Hgene | Tgene |
SNX5 | SLC35C2 |
Involved in several stages of intracellular trafficking.Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,4-bisphosphate(PtdIns(3,4)P2) (PubMed:15561769). Acts in part as component ofthe retromer membrane-deforming SNX-BAR subcomplex. The SNX-BARretromer mediates retrograde transport of cargo proteins fromendosomes to the trans-Golgi network (TGN) and is involved inendosome-to-plasma membrane transport for cargo protein recycling.The SNX-BAR subcomplex functions to deform the donor membrane intoa tubular profile called endosome-to-TGN transport carrier (ETC)(Probable). Does not have in vitro vesicle-to-membrane remodelingactivity (PubMed:23085988). Involved in retrograde transport oflysosomal enzyme receptor IGF2R (PubMed:17148574,PubMed:18596235). May function as link between endosomal transportvesicles and dynactin (Probable). Plays a role in theinternalization of EGFR after EGF stimulation (Probable). Involvedin EGFR endosomal sorting and degradation; the function involvesPIP5K1C isoform 3 and is retromer-independent (PubMed:23602387).Together with PIP5K1C isoform 3 facilitates HGS interaction withubiquitinated EGFR, which initiates EGFR sorting to intraluminalvesicles (ILVs) of the multivesicular body for subsequentlysosomal degradation (Probable). Involved in E-cadherin sortingand degradation; inhibits PIP5K1C isoform 3-mediated E-cadherindegradation (PubMed:24610942). Plays a role in macropinocytosis(PubMed:18854019, PubMed:21048941). {ECO:0000269|PubMed:18854019,ECO:0000269|PubMed:21048941, ECO:0000269|PubMed:24610942,ECO:0000303|PubMed:15561769, ECO:0000303|PubMed:19619496,ECO:0000303|PubMed:23085988}. | May play an important role in the cellular response totissue hypoxia. May be either a GDP-fucose transporter thatcompetes with SLC35C1 for GDP-fucose, or a factor that otherwiseenhances the fucosylation of Notch and is required for optimalNotch signaling in mammalian cells. {ECO:0000269|PubMed:20837470}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SNX5_SLC35C2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SNX5_SLC35C2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SNX5_SLC35C2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SNX5_SLC35C2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SNX5 | C0038356 | Stomach Neoplasms | 1 | CTD_human |