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Fusion gene ID: 35280 |
FusionGeneSummary for SNX27_CDKN3 |
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Fusion gene information | Fusion gene name: SNX27_CDKN3 | Fusion gene ID: 35280 | Hgene | Tgene | Gene symbol | SNX27 | CDKN3 | Gene ID | 81609 | 1033 |
Gene name | sorting nexin family member 27 | cyclin dependent kinase inhibitor 3 | |
Synonyms | MRT1|MY014 | CDI1|CIP2|KAP|KAP1 | |
Cytomap | 1q21.3 | 14q22.2 | |
Type of gene | protein-coding | protein-coding | |
Description | sorting nexin-27methamphetamine-responsive transcript 1 | cyclin-dependent kinase inhibitor 3CDK2-associated dual specificity phosphataseCdk-associated protein phosphatasecyclin-dependent kinase inhibitorcyclin-dependent kinase interacting protein 2cyclin-dependent kinase interactor 1kinase-associated phos | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q96L92 | Q16667 | |
Ensembl transtripts involved in fusion gene | ENST00000458013, ENST00000368843, ENST00000368838, ENST00000482791, | ENST00000335183, ENST00000543789, ENST00000442975, ENST00000458126, ENST00000556102, ENST00000541304, ENST00000556305, ENST00000395577, | |
Fusion gene scores | * DoF score | 11 X 6 X 9=594 | 4 X 4 X 4=64 |
# samples | 11 | 4 | |
** MAII score | log2(11/594*10)=-2.43295940727611 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/64*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SNX27 [Title/Abstract] AND CDKN3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CDKN3 | GO:0007050 | cell cycle arrest | 8242750 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | OV | TCGA-61-1918-01A | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000458013 | ENST00000335183 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000458013 | ENST00000543789 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000458013 | ENST00000442975 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000458013 | ENST00000458126 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000458013 | ENST00000556102 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000458013 | ENST00000541304 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-3UTR | ENST00000458013 | ENST00000556305 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-3UTR | ENST00000458013 | ENST00000395577 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
In-frame | ENST00000368843 | ENST00000335183 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000368843 | ENST00000543789 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000368843 | ENST00000442975 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000368843 | ENST00000458126 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000368843 | ENST00000556102 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-intron | ENST00000368843 | ENST00000541304 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-3UTR | ENST00000368843 | ENST00000556305 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
5CDS-3UTR | ENST00000368843 | ENST00000395577 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-3CDS | ENST00000368838 | ENST00000335183 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000368838 | ENST00000543789 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000368838 | ENST00000442975 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000368838 | ENST00000458126 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000368838 | ENST00000556102 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000368838 | ENST00000541304 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-3UTR | ENST00000368838 | ENST00000556305 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-3UTR | ENST00000368838 | ENST00000395577 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-3CDS | ENST00000482791 | ENST00000335183 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000482791 | ENST00000543789 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000482791 | ENST00000442975 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000482791 | ENST00000458126 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000482791 | ENST00000556102 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-intron | ENST00000482791 | ENST00000541304 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-3UTR | ENST00000482791 | ENST00000556305 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
intron-3UTR | ENST00000482791 | ENST00000395577 | SNX27 | chr1 | 151584988 | + | CDKN3 | chr14 | 54882617 | + |
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FusionProtFeatures for SNX27_CDKN3 |
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Hgene | Tgene |
SNX27 | CDKN3 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368838 | + | 1 | 11 | 161_269 | 0 | 436 | Domain | PX |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368838 | + | 1 | 11 | 43_136 | 0 | 436 | Domain | PDZ |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368843 | + | 1 | 12 | 161_269 | 103 | 529 | Domain | PX |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368843 | + | 1 | 12 | 43_136 | 103 | 529 | Domain | PDZ |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000458013 | + | 1 | 12 | 161_269 | 103 | 542 | Domain | PX |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000458013 | + | 1 | 12 | 43_136 | 103 | 542 | Domain | PDZ |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368838 | + | 1 | 11 | 273_362 | 0 | 436 | Region | Note=FERM-like region F1 |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368838 | + | 1 | 11 | 373_421 | 0 | 436 | Region | Note=FERM-like region F2 |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368838 | + | 1 | 11 | 425_525 | 0 | 436 | Region | Note=FERM-like region F3 |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368843 | + | 1 | 12 | 273_362 | 103 | 529 | Region | Note=FERM-like region F1 |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368843 | + | 1 | 12 | 373_421 | 103 | 529 | Region | Note=FERM-like region F2 |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000368843 | + | 1 | 12 | 425_525 | 103 | 529 | Region | Note=FERM-like region F3 |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000458013 | + | 1 | 12 | 273_362 | 103 | 542 | Region | Note=FERM-like region F1 |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000458013 | + | 1 | 12 | 373_421 | 103 | 542 | Region | Note=FERM-like region F2 |
Hgene | >SNX27 | chr1:151584988 | chr14:54882617 | ENST00000458013 | + | 1 | 12 | 425_525 | 103 | 542 | Region | Note=FERM-like region F3 |
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FusionGeneSequence for SNX27_CDKN3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SNX27_ENST00000458013_chr1_151584988_+_CDKN3_ENST00000335183_chr14_54882617_+_178aa MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAA >In-frame_SNX27_ENST00000368843_chr1_151584988_+_CDKN3_ENST00000335183_chr14_54882617_+_178aa MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAA |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SNX27_ENST00000458013_chr1_151584988_+_CDKN3_ENST00000335183_chr14_54882617_+_534nt ATGGCGGACGAGGACGGGGAAGGGATTCATCCCTCAGCCCCTCACAGGAACGGAGGTGGCGGCGGCGGCGGGGGGTCTGGGCTCCACTGC GCCGGGAACGGCGGCGGGGGAGGCGGCGGCCCGCGGGTCGTGCGCATCGTCAAGTCCGAGTCCGGCTACGGCTTCAACGTGCGGGGCCAA GTGAGCGAGGGCGGGCAACTGCGGAGCATCAACGGGGAGCTGTACGCGCCGCTGCAGCATGTGAGCGCCGTGCTGCCCGGGGGGGCGGCC GATCGGGCCGGGGTGCGCAAGGGGGACCGCATCCTGGAGGTCTGCTATGGAGGACTTGGGAGATCTTGTCTTGTAGCTGCTTGTCTCCTA CTATACCTGTCTGACACAATATCACCAGAGCAAGCCATAGACAGCCTGCGAGACCTAAGAGGATCCGGGGCAATACAGACCATCAAGCAA >In-frame_SNX27_ENST00000368843_chr1_151584988_+_CDKN3_ENST00000335183_chr14_54882617_+_534nt ATGGCGGACGAGGACGGGGAAGGGATTCATCCCTCAGCCCCTCACAGGAACGGAGGTGGCGGCGGCGGCGGGGGGTCTGGGCTCCACTGC GCCGGGAACGGCGGCGGGGGAGGCGGCGGCCCGCGGGTCGTGCGCATCGTCAAGTCCGAGTCCGGCTACGGCTTCAACGTGCGGGGCCAA GTGAGCGAGGGCGGGCAACTGCGGAGCATCAACGGGGAGCTGTACGCGCCGCTGCAGCATGTGAGCGCCGTGCTGCCCGGGGGGGCGGCC GATCGGGCCGGGGTGCGCAAGGGGGACCGCATCCTGGAGGTCTGCTATGGAGGACTTGGGAGATCTTGTCTTGTAGCTGCTTGTCTCCTA CTATACCTGTCTGACACAATATCACCAGAGCAAGCCATAGACAGCCTGCGAGACCTAAGAGGATCCGGGGCAATACAGACCATCAAGCAA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SNX27_ENST00000458013_chr1_151584988_+_CDKN3_ENST00000335183_chr14_54882617_+_794nt TCCCGCGGCCGGCGGATCGGGCGCGCGCGTCGGGGGTCGTCCGGCTGCCAGGCAGGGCGAGCACGCGCCGGGAGGCCTTGGAGGCGTAGG GGGCGGGGGTACGGCTCGCCTGCTCGCAAGATGGCGGACGAGGACGGGGAAGGGATTCATCCCTCAGCCCCTCACAGGAACGGAGGTGGC GGCGGCGGCGGGGGGTCTGGGCTCCACTGCGCCGGGAACGGCGGCGGGGGAGGCGGCGGCCCGCGGGTCGTGCGCATCGTCAAGTCCGAG TCCGGCTACGGCTTCAACGTGCGGGGCCAAGTGAGCGAGGGCGGGCAACTGCGGAGCATCAACGGGGAGCTGTACGCGCCGCTGCAGCAT GTGAGCGCCGTGCTGCCCGGGGGGGCGGCCGATCGGGCCGGGGTGCGCAAGGGGGACCGCATCCTGGAGGTCTGCTATGGAGGACTTGGG AGATCTTGTCTTGTAGCTGCTTGTCTCCTACTATACCTGTCTGACACAATATCACCAGAGCAAGCCATAGACAGCCTGCGAGACCTAAGA GGATCCGGGGCAATACAGACCATCAAGCAATACAATTATCTTCATGAGTTTCGGGACAAATTAGCTGCACATCTATCATCAAGAGATTCA CAATCAAGATCTGTATCAAGATAAAGGAATTCAAATAGCATATATATGACCATGTCTGAAATGTCAGTTCTCTAGCATAATTTGTATTGA >In-frame_SNX27_ENST00000368843_chr1_151584988_+_CDKN3_ENST00000335183_chr14_54882617_+_794nt TCCCGCGGCCGGCGGATCGGGCGCGCGCGTCGGGGGTCGTCCGGCTGCCAGGCAGGGCGAGCACGCGCCGGGAGGCCTTGGAGGCGTAGG GGGCGGGGGTACGGCTCGCCTGCTCGCAAGATGGCGGACGAGGACGGGGAAGGGATTCATCCCTCAGCCCCTCACAGGAACGGAGGTGGC GGCGGCGGCGGGGGGTCTGGGCTCCACTGCGCCGGGAACGGCGGCGGGGGAGGCGGCGGCCCGCGGGTCGTGCGCATCGTCAAGTCCGAG TCCGGCTACGGCTTCAACGTGCGGGGCCAAGTGAGCGAGGGCGGGCAACTGCGGAGCATCAACGGGGAGCTGTACGCGCCGCTGCAGCAT GTGAGCGCCGTGCTGCCCGGGGGGGCGGCCGATCGGGCCGGGGTGCGCAAGGGGGACCGCATCCTGGAGGTCTGCTATGGAGGACTTGGG AGATCTTGTCTTGTAGCTGCTTGTCTCCTACTATACCTGTCTGACACAATATCACCAGAGCAAGCCATAGACAGCCTGCGAGACCTAAGA GGATCCGGGGCAATACAGACCATCAAGCAATACAATTATCTTCATGAGTTTCGGGACAAATTAGCTGCACATCTATCATCAAGAGATTCA CAATCAAGATCTGTATCAAGATAAAGGAATTCAAATAGCATATATATGACCATGTCTGAAATGTCAGTTCTCTAGCATAATTTGTATTGA |
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FusionGenePPI for SNX27_CDKN3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SNX27 | PHLPP2, PHLPP1, ELAVL1, PNPLA3, AKT2, HLCS, ABCC4, SELP, INSR, NTRK1, APP, VPS26B, RASSF1, CDK16, MSH2, CENPJ, USB1, TIGD6, APOA1, CDS1, CP, HP, C3, IGHA2, BPIFA1, C4A, IGHG3, LTF, PRR4, FIG4, SERPINA1, PIGR, FGB, LACRT, ORM1, FGA, FGG, AHSG, SCGB2A1, IGHM, LRRC36, GPR156, IGHG2, MRAP2, APOA4, BPIFB1, IGHG4, IGLC2, TF, LCN2, PROSER2, C6orf58, HPX, FAM19A3, SERPINA3, CST1, IGHA1, DMBT1, TTR, ZG16B, IGJ, KNG1, SCGB1D1, CHRDL1, IGLL5, ALB, LYZ, LCN1, CST4, IGHG1, PTPRQ, PIBF1, EEA1, TRIM25 | CDKN3 | CDK2, CDK1, MS4A3, NCOA3, BMI1, ROCK2, ROCK1, CDC42BPB, PPP1R12A, CDKN3, RAD23B, CLPB, GOPC, RAD23A, HAX1, BAG6, ARHGEF28, CECR5, DLAT, NAP1L4, DIS3L, SEC63 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | CDKN3 | chr1:151584988 | chr14:54882617 | ENST00000335183 | + | 4 | 8 | 1_34 | 138 | 213 | CDK2 |
Tgene | CDKN3 | chr1:151584988 | chr14:54882617 | ENST00000442975 | + | 3 | 7 | 1_34 | 98 | 173 | CDK2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SNX27_CDKN3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SNX27_CDKN3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CDKN3 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | CDKN3 | C2239176 | Liver carcinoma | 1 | UNIPROT |