FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 35209

FusionGeneSummary for SNRPN_ARHGEF7

check button Fusion gene summary
Fusion gene informationFusion gene name: SNRPN_ARHGEF7
Fusion gene ID: 35209
HgeneTgene
Gene symbol

SNRPN

ARHGEF7

Gene ID

6638

8874

Gene namesmall nuclear ribonucleoprotein polypeptide NRho guanine nucleotide exchange factor 7
SynonymsHCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-NBETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB
Cytomap

15q11.2

13q34

Type of geneprotein-codingprotein-coding
Descriptionsmall nuclear ribonucleoprotein-associated protein NSM protein Nsm protein Dtissue-specific splicing proteinrho guanine nucleotide exchange factor 7PAK-interacting exchange factor betaRho guanine nucleotide exchange factor (GEF) 7SH3 domain-containing proline-rich protein
Modification date2018052320180522
UniProtAcc

P63162

Q14155

Ensembl transtripts involved in fusion geneENST00000400098, ENST00000400100, 
ENST00000400097, ENST00000553597, 
ENST00000390687, ENST00000346403, 
ENST00000554227, ENST00000577565, 
ENST00000444203, 
ENST00000317133, 
ENST00000375741, ENST00000375739, 
ENST00000370623, ENST00000544132, 
ENST00000218789, ENST00000375736, 
ENST00000426073, ENST00000375737, 
ENST00000375723, ENST00000478679, 
ENST00000483189, 
Fusion gene scores* DoF score10 X 13 X 2=2606 X 7 X 4=168
# samples 147
** MAII scorelog2(14/260*10)=-0.893084796083488
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/168*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SNRPN [Title/Abstract] AND ARHGEF7 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneARHGEF7

GO:0043547

positive regulation of GTPase activity

21048939


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AI675348SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-intronENST00000400098ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400098ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400098ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400098ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400098ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400098ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400098ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400098ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400098ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400098ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400098ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400098ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400100ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400100ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400100ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400100ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400100ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400100ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400100ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400100ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400100ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400100ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400100ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400100ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400097ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400097ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400097ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400097ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400097ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400097ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400097ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000400097ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400097ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400097ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400097ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000400097ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-intronENST00000553597ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-intronENST00000553597ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-intronENST00000553597ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-3UTRENST00000553597ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-intronENST00000553597ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-3UTRENST00000553597ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-3UTRENST00000553597ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-3UTRENST00000553597ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-intronENST00000553597ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-intronENST00000553597ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-intronENST00000553597ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
intron-intronENST00000553597ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000390687ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000390687ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000390687ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000390687ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000390687ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000390687ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000390687ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000390687ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000390687ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000390687ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000390687ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000390687ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000346403ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000346403ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000346403ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000346403ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000346403ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000346403ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000346403ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000346403ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000346403ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000346403ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000346403ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000346403ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000554227ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000554227ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000554227ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000554227ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000554227ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000554227ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000554227ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000554227ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000554227ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000554227ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000554227ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000554227ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000577565ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000577565ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000577565ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000577565ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000577565ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000577565ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000577565ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000577565ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000577565ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000577565ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000577565ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000577565ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000444203ENST00000317133SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000444203ENST00000375741SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000444203ENST00000375739SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000444203ENST00000370623SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000444203ENST00000544132SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000444203ENST00000218789SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000444203ENST00000375736SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-3UTRENST00000444203ENST00000426073SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000444203ENST00000375737SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000444203ENST00000375723SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000444203ENST00000478679SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-
3UTR-intronENST00000444203ENST00000483189SNRPNchr15

25223627

-ARHGEF7chr13

111957250

-

Top

FusionProtFeatures for SNRPN_ARHGEF7


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
SNRPN

P63162

ARHGEF7

Q14155

May be involved in tissue-specific alternative RNAprocessing events.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for SNRPN_ARHGEF7


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for SNRPN_ARHGEF7


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for SNRPN_ARHGEF7


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for SNRPN_ARHGEF7


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource