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FusionGeneSummary

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FusionGeneSequence

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Fusion gene ID: 35178

FusionGeneSummary for SNRNP48_NISCH

check button Fusion gene summary
Fusion gene informationFusion gene name: SNRNP48_NISCH
Fusion gene ID: 35178
HgeneTgene
Gene symbol

SNRNP48

NISCH

Gene ID

154007

11188

Gene namesmall nuclear ribonucleoprotein U11/U12 subunit 48nischarin
SynonymsC6orf151|dJ336K20B.1|dJ512B11.2I-1|IR1|IRAS|hIRAS
Cytomap

6p24.3

3p21.1

Type of geneprotein-codingprotein-coding
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa proteinU11-48KU11/U12 snRNP 48 kDa proteinU11/U12 snRNP 48KU11/U12-48Ksmall nuclear ribonucleoprotein 48kDa (U11/U12)small nuclear ribonucleoprotein, U11/U12 48KDa subunitnischarinI-1 receptor candidate proteinI1R candidate proteinimidazoline receptor 1imidazoline receptor antisera selected
Modification date2018052320180523
UniProtAcc

Q6IEG0

Q9Y2I1

Ensembl transtripts involved in fusion geneENST00000342415, ENST00000479054, 
ENST00000345716, ENST00000488380, 
ENST00000420808, ENST00000464280, 
Fusion gene scores* DoF score2 X 2 X 1=47 X 6 X 4=168
# samples 27
** MAII scorelog2(2/4*10)=2.32192809488736log2(7/168*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: SNRNP48 [Title/Abstract] AND NISCH [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-E2-A10A-01ASNRNP48chr6

7595334

+NISCHchr3

52518529

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000342415ENST00000479054SNRNP48chr6

7595334

+NISCHchr3

52518529

+
In-frameENST00000342415ENST00000345716SNRNP48chr6

7595334

+NISCHchr3

52518529

+
5CDS-intronENST00000342415ENST00000488380SNRNP48chr6

7595334

+NISCHchr3

52518529

+
5CDS-intronENST00000342415ENST00000420808SNRNP48chr6

7595334

+NISCHchr3

52518529

+
5CDS-intronENST00000342415ENST00000464280SNRNP48chr6

7595334

+NISCHchr3

52518529

+

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FusionProtFeatures for SNRNP48_NISCH


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
SNRNP48

Q6IEG0

NISCH

Q9Y2I1

Likely involved in U12-type 5' splice site recognition.{ECO:0000269|PubMed:19217400}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>>>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSNRNP48chr6:7595334chr3:52518529ENST00000342415+4955_82135340Zinc fingerCHHC U11-48K-type
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221634_6955091505Coiled coilOntology_term=ECO:0000255
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014634_695-9516Coiled coilOntology_term=ECO:0000255
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322634_6955091505Coiled coilOntology_term=ECO:0000255
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+12211048_11045091505Compositional biasNote=Ala/Pro-rich
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221629_6915091505Compositional biasNote=Glu-rich
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+0141048_1104-9516Compositional biasNote=Ala/Pro-rich
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014629_691-9516Compositional biasNote=Glu-rich
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+13221048_11045091505Compositional biasNote=Ala/Pro-rich
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322629_6915091505Compositional biasNote=Glu-rich
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+01411_121-9516DomainPX
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014120_695-9516RegionNote=Necessary for homooligomerization and targeting to endosomes
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+0142_133-9516RegionNote=Necessary for binding to phosphoinositide-3-P%3B not sufficient for targeting to endosomes
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014288_309-9516RepeatNote=LRR 1
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014311_332-9516RepeatNote=LRR 2
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014333_354-9516RepeatNote=LRR 3
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014356_377-9516RepeatNote=LRR 4
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014378_399-9516RepeatNote=LRR 5
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014403_424-9516RepeatNote=LRR 6

- In-frame and not-retained protein feature among the 13 regional features.
>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneSNRNP48chr6:7595334chr3:52518529ENST00000342415+49294_335135340Compositional biasNote=Arg-rich
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+122111_1215091505DomainPX
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+132211_1215091505DomainPX
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221120_6955091505RegionNote=Necessary for homooligomerization and targeting to endosomes
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+12212_1335091505RegionNote=Necessary for binding to phosphoinositide-3-P%3B not sufficient for targeting to endosomes
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322120_6955091505RegionNote=Necessary for homooligomerization and targeting to endosomes
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+13222_1335091505RegionNote=Necessary for binding to phosphoinositide-3-P%3B not sufficient for targeting to endosomes
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221288_3095091505RepeatNote=LRR 1
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221311_3325091505RepeatNote=LRR 2
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221333_3545091505RepeatNote=LRR 3
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221356_3775091505RepeatNote=LRR 4
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221378_3995091505RepeatNote=LRR 5
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221403_4245091505RepeatNote=LRR 6
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322288_3095091505RepeatNote=LRR 1
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322311_3325091505RepeatNote=LRR 2
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322333_3545091505RepeatNote=LRR 3
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322356_3775091505RepeatNote=LRR 4
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322378_3995091505RepeatNote=LRR 5
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322403_4245091505RepeatNote=LRR 6


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FusionGeneSequence for SNRNP48_NISCH


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000479054_chr3_52518529_+_1131aa
MEGEPPPVEERRRLQEELNEFVESGCRTLEEVTASLGWDLDSLDPGEEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEE
DEMYNPEFFYENVKIPSITLNKDSQFQIIKQARTAVGKDSDCYNQRIMFVQEEALASSLSSTDSLTPEHQPIAQGCSDSLESIPAGQAAS
DDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEE
EEEDVAENRYFEMGPPDVEEEEGGGQGEEEEEEEEDEEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQGSIRQFAACLVLTDF
GIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCLVLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPIL
YGSHTSLQEFLRQLLTFYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEAVKSAAIPYWLLLTP
QHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCTQPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRAS
LQDLKTVVIAKTPGTGGSPQGSFADGQPAERRASNDQRPQEVPAEALAPAPAEVPAPAPAAASASGPAKTPAPAEASTSALVPEETPVEA
PAPPPAEAPAQYPSEHLIQATSEENQIPSHLPACPSLRHVASLRGSAIIELFHSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLST
KAVYFVLHDGLRRYFSEPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTRDSYLTHCFLQHLMV
VLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYPSEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCC
RGPLRPKTLLLTSSEIFLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDDVQGHDLMGSVTLDHFGEV

>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000345716_chr3_52518529_+_1131aa
MEGEPPPVEERRRLQEELNEFVESGCRTLEEVTASLGWDLDSLDPGEEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEE
DEMYNPEFFYENVKIPSITLNKDSQFQIIKQARTAVGKDSDCYNQRIMFVQEEALASSLSSTDSLTPEHQPIAQGCSDSLESIPAGQAAS
DDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEE
EEEDVAENRYFEMGPPDVEEEEGGGQGEEEEEEEEDEEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQGSIRQFAACLVLTDF
GIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCLVLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPIL
YGSHTSLQEFLRQLLTFYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEAVKSAAIPYWLLLTP
QHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCTQPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRAS
LQDLKTVVIAKTPGTGGSPQGSFADGQPAERRASNDQRPQEVPAEALAPAPAEVPAPAPAAASASGPAKTPAPAEASTSALVPEETPVEA
PAPPPAEAPAQYPSEHLIQATSEENQIPSHLPACPSLRHVASLRGSAIIELFHSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLST
KAVYFVLHDGLRRYFSEPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTRDSYLTHCFLQHLMV
VLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYPSEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCC
RGPLRPKTLLLTSSEIFLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDDVQGHDLMGSVTLDHFGEV


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000479054_chr3_52518529_+_3393nt
ATGGAGGGCGAGCCTCCACCTGTGGAGGAGCGGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACGTTGGAG
GAGGTGACCGCGTCCCTGGGCTGGGACCTAGATAGTCTGGATCCCGGGGAAGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATAC
GATTCCAATCATCACATGCCTAAATCATCTTTGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAG
GATGAAATGTATAATCCTGAGTTTTTCTATGAAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCAGATAATTAAA
CAAGCTAGAACTGCAGTTGGGAAAGACAGTGATTGTTATAATCAAAGAATCATGTTCGTTCAGGAGGAGGCCCTGGCCAGCAGCCTCTCG
TCCACTGACAGTCTGACTCCCGAGCACCAGCCCATTGCCCAGGGATGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCC
GATGATTTAAGGGACGTGCCAGGAGCTGTTGGTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGGTGCCGGGGTCTGGCCAG
ATCATCTTCCTGCCCTTCACCTGCATTGGCTACACGGCCACCAATCAGGACTTCATCCAGCGCCTGAGCACACTGATCCGGCAGGCCATC
GAGCGGCAGCTGCCTGCCTGGATCGAGGCTGCCAACCAGCGGGAGGAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAA
GAAGAGGAGGACGTGGCTGAGAACCGCTACTTTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAG
GAGGAGGAAGAGGAGGATGAAGAGGCCGAGGAGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAGCAC
ATCCGCATCCTCAAGGTGCTGTGGTGCTTCCTGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTGCCTTGTGCTCACCGACTTC
GGCATCGCAGTCTTCGAGATCCCGCACCAGGAGTCTCGGGGCAGCAGCCAGCACATCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCG
CATGGCGACCTCACCGAGTTTGGCTTCCTCATGCCGGAGCTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATC
TCGGACGCCGCCAACCTGCACGAGTTCCACGCGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTC
TACGGCAGCCACACCAGCCTGCAGGAGTTCCTGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGCAGCCAGGGC
TGCTTCCCCGTCTACCTGGTCTACAGTGACAAGCGCATGGTGCAGACGGCCGCCGGGGACTACTCAGGCAACATCGAGTGGGCCAGCTGC
ACACTCTGTTCAGCCGTGCGGCGCTCCTGCTGCGCGCCCTCTGAGGCCGTCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCC
CAGCACCTCAACGTCATCAAGGCCGACTTCAACCCCATGCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGC
CGTGTGCCGCTCTCCACCGTGCTGCTGGACCCCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTG
CTCGTGGGGTACCGCTTTGTCACTGCCATCTTCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAACCAGCTGCGGGCCTCG
CTGCAGGACCTGAAGACTGTGGTCATCGCCAAGACCCCCGGGACGGGAGGCAGCCCCCAGGGCTCCTTTGCGGATGGCCAGCCTGCCGAG
CGCAGGGCCAGCAATGACCAGCGTCCCCAGGAGGTCCCAGCAGAGGCTCTGGCCCCGGCCCCAGCGGAAGTCCCAGCTCCAGCCCCTGCA
GCAGCCTCAGCCTCAGGCCCAGCGAAGACTCCGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCT
CCAGCCCCACCCCCAGCCGAGGCCCCTGCCCAGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCTCGCAC
TTGCCTGCCTGCCCGTCGCTCCGGCACGTCGCCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGTTGAA
AACGAGGAGCTGAGGCACCTCATGTGGTCCTCGGTGGTGTTCTACCAGACCCCAGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACC
AAGGCTGTGTACTTTGTGCTCCACGACGGCCTCCGCCGCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTAC
AACAACAGCCCTTTCCACATCTCCCAGTGCTTCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTC
CGGCTGACGGGTTCCACCCCGATGCAGGTGGTCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGCACCTCATGGTC
GTGCTGTCCTCTCTGGAACGCACGCCCTCGCCGGAGCCTGTTGACAAGGACTTCTACTCCGAGTTTGGGAACAAGACCACAGGGAAGATG
GAGAACTACGAGCTGATCCACTCTAGTCGCGTCAAGTTTACCTACCCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAA
AAGATGGCTGAGCCAGAGAAGGCCCCAGCCCTCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGC
AGGGGCCCCCTGCGCCCCAAGACACTCCTGCTCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGAG
TTTGCCAAAGAGCCGCCGCAGAGAGACAGGTACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAGTGCTCATGGGCTACCAG
ACCTACCCGCAGGCCCTCACCCTCGTCTTCGATGACGTGCAAGGTCATGACCTCATGGGCAGTGTCACCCTGGACCACTTTGGGGAGGTG
CCAGGTGGCCCGGCTAGAGCCAGCCAGGGCCGTGAAGTCCAGTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCG

>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000345716_chr3_52518529_+_3393nt
ATGGAGGGCGAGCCTCCACCTGTGGAGGAGCGGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACGTTGGAG
GAGGTGACCGCGTCCCTGGGCTGGGACCTAGATAGTCTGGATCCCGGGGAAGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATAC
GATTCCAATCATCACATGCCTAAATCATCTTTGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAG
GATGAAATGTATAATCCTGAGTTTTTCTATGAAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCAGATAATTAAA
CAAGCTAGAACTGCAGTTGGGAAAGACAGTGATTGTTATAATCAAAGAATCATGTTCGTTCAGGAGGAGGCCCTGGCCAGCAGCCTCTCG
TCCACTGACAGTCTGACTCCCGAGCACCAGCCCATTGCCCAGGGATGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCC
GATGATTTAAGGGACGTGCCAGGAGCTGTTGGTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGGTGCCGGGGTCTGGCCAG
ATCATCTTCCTGCCCTTCACCTGCATTGGCTACACGGCCACCAATCAGGACTTCATCCAGCGCCTGAGCACACTGATCCGGCAGGCCATC
GAGCGGCAGCTGCCTGCCTGGATCGAGGCTGCCAACCAGCGGGAGGAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAA
GAAGAGGAGGACGTGGCTGAGAACCGCTACTTTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAG
GAGGAGGAAGAGGAGGATGAAGAGGCCGAGGAGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAGCAC
ATCCGCATCCTCAAGGTGCTGTGGTGCTTCCTGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTGCCTTGTGCTCACCGACTTC
GGCATCGCAGTCTTCGAGATCCCGCACCAGGAGTCTCGGGGCAGCAGCCAGCACATCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCG
CATGGCGACCTCACCGAGTTTGGCTTCCTCATGCCGGAGCTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATC
TCGGACGCCGCCAACCTGCACGAGTTCCACGCGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTC
TACGGCAGCCACACCAGCCTGCAGGAGTTCCTGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGCAGCCAGGGC
TGCTTCCCCGTCTACCTGGTCTACAGTGACAAGCGCATGGTGCAGACGGCCGCCGGGGACTACTCAGGCAACATCGAGTGGGCCAGCTGC
ACACTCTGTTCAGCCGTGCGGCGCTCCTGCTGCGCGCCCTCTGAGGCCGTCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCC
CAGCACCTCAACGTCATCAAGGCCGACTTCAACCCCATGCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGC
CGTGTGCCGCTCTCCACCGTGCTGCTGGACCCCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTG
CTCGTGGGGTACCGCTTTGTCACTGCCATCTTCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAACCAGCTGCGGGCCTCG
CTGCAGGACCTGAAGACTGTGGTCATCGCCAAGACCCCCGGGACGGGAGGCAGCCCCCAGGGCTCCTTTGCGGATGGCCAGCCTGCCGAG
CGCAGGGCCAGCAATGACCAGCGTCCCCAGGAGGTCCCAGCAGAGGCTCTGGCCCCGGCCCCAGCGGAAGTCCCAGCTCCAGCCCCTGCA
GCAGCCTCAGCCTCAGGCCCAGCGAAGACTCCGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCT
CCAGCCCCACCCCCAGCCGAGGCCCCTGCCCAGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCTCGCAC
TTGCCTGCCTGCCCGTCGCTCCGGCACGTCGCCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGTTGAA
AACGAGGAGCTGAGGCACCTCATGTGGTCCTCGGTGGTGTTCTACCAGACCCCAGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACC
AAGGCTGTGTACTTTGTGCTCCACGACGGCCTCCGCCGCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTAC
AACAACAGCCCTTTCCACATCTCCCAGTGCTTCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTC
CGGCTGACGGGTTCCACCCCGATGCAGGTGGTCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGCACCTCATGGTC
GTGCTGTCCTCTCTGGAACGCACGCCCTCGCCGGAGCCTGTTGACAAGGACTTCTACTCCGAGTTTGGGAACAAGACCACAGGGAAGATG
GAGAACTACGAGCTGATCCACTCTAGTCGCGTCAAGTTTACCTACCCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAA
AAGATGGCTGAGCCAGAGAAGGCCCCAGCCCTCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGC
AGGGGCCCCCTGCGCCCCAAGACACTCCTGCTCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGAG
TTTGCCAAAGAGCCGCCGCAGAGAGACAGGTACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAGTGCTCATGGGCTACCAG
ACCTACCCGCAGGCCCTCACCCTCGTCTTCGATGACGTGCAAGGTCATGACCTCATGGGCAGTGTCACCCTGGACCACTTTGGGGAGGTG
CCAGGTGGCCCGGCTAGAGCCAGCCAGGGCCGTGAAGTCCAGTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCG


* Fusion transcript sequences (Full-length transcript).
>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000479054_chr3_52518529_+_4038nt
GAGGCCTGCGCGTGCGGTCTGCAGTTCGGCCGCTTCCTCTTGGCGGGTGGGCTGCAGCTATGGAGGGCGAGCCTCCACCTGTGGAGGAGC
GGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACGTTGGAGGAGGTGACCGCGTCCCTGGGCTGGGACCTAG
ATAGTCTGGATCCCGGGGAAGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATACGATTCCAATCATCACATGCCTAAATCATCTT
TGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGATGAAATGTATAATCCTGAGTTTTTCTATG
AAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCAGATAATTAAACAAGCTAGAACTGCAGTTGGGAAAGACAGTG
ATTGTTATAATCAAAGAATCATGTTCGTTCAGGAGGAGGCCCTGGCCAGCAGCCTCTCGTCCACTGACAGTCTGACTCCCGAGCACCAGC
CCATTGCCCAGGGATGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCCGATGATTTAAGGGACGTGCCAGGAGCTGTTG
GTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGGTGCCGGGGTCTGGCCAGATCATCTTCCTGCCCTTCACCTGCATTGGCT
ACACGGCCACCAATCAGGACTTCATCCAGCGCCTGAGCACACTGATCCGGCAGGCCATCGAGCGGCAGCTGCCTGCCTGGATCGAGGCTG
CCAACCAGCGGGAGGAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAAGAAGAGGAGGACGTGGCTGAGAACCGCTACT
TTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAGGAGGAGGAAGAGGAGGATGAAGAGGCCGAGG
AGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAGCACATCCGCATCCTCAAGGTGCTGTGGTGCTTCC
TGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTGCCTTGTGCTCACCGACTTCGGCATCGCAGTCTTCGAGATCCCGCACCAGG
AGTCTCGGGGCAGCAGCCAGCACATCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCGCATGGCGACCTCACCGAGTTTGGCTTCCTCA
TGCCGGAGCTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATCTCGGACGCCGCCAACCTGCACGAGTTCCACG
CGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTCTACGGCAGCCACACCAGCCTGCAGGAGTTCC
TGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGCAGCCAGGGCTGCTTCCCCGTCTACCTGGTCTACAGTGACA
AGCGCATGGTGCAGACGGCCGCCGGGGACTACTCAGGCAACATCGAGTGGGCCAGCTGCACACTCTGTTCAGCCGTGCGGCGCTCCTGCT
GCGCGCCCTCTGAGGCCGTCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCCCAGCACCTCAACGTCATCAAGGCCGACTTCA
ACCCCATGCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGCCGTGTGCCGCTCTCCACCGTGCTGCTGGACC
CCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTGCTCGTGGGGTACCGCTTTGTCACTGCCATCT
TCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAACCAGCTGCGGGCCTCGCTGCAGGACCTGAAGACTGTGGTCATCGCCA
AGACCCCCGGGACGGGAGGCAGCCCCCAGGGCTCCTTTGCGGATGGCCAGCCTGCCGAGCGCAGGGCCAGCAATGACCAGCGTCCCCAGG
AGGTCCCAGCAGAGGCTCTGGCCCCGGCCCCAGCGGAAGTCCCAGCTCCAGCCCCTGCAGCAGCCTCAGCCTCAGGCCCAGCGAAGACTC
CGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCTCCAGCCCCACCCCCAGCCGAGGCCCCTGCCC
AGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCTCGCACTTGCCTGCCTGCCCGTCGCTCCGGCACGTCG
CCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGTTGAAAACGAGGAGCTGAGGCACCTCATGTGGTCCT
CGGTGGTGTTCTACCAGACCCCAGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACCAAGGCTGTGTACTTTGTGCTCCACGACGGCC
TCCGCCGCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTACAACAACAGCCCTTTCCACATCTCCCAGTGCT
TCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTCCGGCTGACGGGTTCCACCCCGATGCAGGTGG
TCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGCACCTCATGGTCGTGCTGTCCTCTCTGGAACGCACGCCCTCGC
CGGAGCCTGTTGACAAGGACTTCTACTCCGAGTTTGGGAACAAGACCACAGGGAAGATGGAGAACTACGAGCTGATCCACTCTAGTCGCG
TCAAGTTTACCTACCCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAAAAGATGGCTGAGCCAGAGAAGGCCCCAGCCC
TCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGCAGGGGCCCCCTGCGCCCCAAGACACTCCTGC
TCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGAGTTTGCCAAAGAGCCGCCGCAGAGAGACAGGT
ACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAGTGCTCATGGGCTACCAGACCTACCCGCAGGCCCTCACCCTCGTCTTCG
ATGACGTGCAAGGTCATGACCTCATGGGCAGTGTCACCCTGGACCACTTTGGGGAGGTGCCAGGTGGCCCGGCTAGAGCCAGCCAGGGCC
GTGAAGTCCAGTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCGCTGTTGGCTCGCCAGTGGGAGGCCCTGTGTG
GCCGTGAGCTGCCTGTCGAGCTCACCGGCTAGCCCAGGCCACAGCCAGCCTGTCGTGTCCAGCCTGACGCCTACTGGGGCAGGGCAGCAG
GCTTTTGTGTTCTCTAAAAATGTTTTATCCTCCCTTTGGTACCTTAATTTGACTGTCCTCGCAGAGAATGTGAACATGTGTGTGTGTTGT
GTTAATTCTTTCTCATGTTGGGAGTGAGAATGCCGGGCCCCTCAGGGCTGTCGGTGTGCTGTCAGCCTCCCACAGGTGGTACAGCCGTGC
ACACCAGTGTCGTGTCTGCTGTTGTGGGACCGTTGTTAACACGTGACACTGTGGGTCTGACTTTCTCTTCTACACGTCCTTTCCTGAAGT
GTCGAGTCCAGTCCTTTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGGCATCTTGCTGCTAATCCTGAGGCTGGTAGCAG
AATGCACATTGGAAGCTCCCACCCCATATTGTTCTTCAAAGTGGAGGTCTCCCCTGATCCAGACAAGTGGGAGAGCCCGTGGGGGCAGGG

>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000345716_chr3_52518529_+_4041nt
GAGGCCTGCGCGTGCGGTCTGCAGTTCGGCCGCTTCCTCTTGGCGGGTGGGCTGCAGCTATGGAGGGCGAGCCTCCACCTGTGGAGGAGC
GGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACGTTGGAGGAGGTGACCGCGTCCCTGGGCTGGGACCTAG
ATAGTCTGGATCCCGGGGAAGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATACGATTCCAATCATCACATGCCTAAATCATCTT
TGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGATGAAATGTATAATCCTGAGTTTTTCTATG
AAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCAGATAATTAAACAAGCTAGAACTGCAGTTGGGAAAGACAGTG
ATTGTTATAATCAAAGAATCATGTTCGTTCAGGAGGAGGCCCTGGCCAGCAGCCTCTCGTCCACTGACAGTCTGACTCCCGAGCACCAGC
CCATTGCCCAGGGATGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCCGATGATTTAAGGGACGTGCCAGGAGCTGTTG
GTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGGTGCCGGGGTCTGGCCAGATCATCTTCCTGCCCTTCACCTGCATTGGCT
ACACGGCCACCAATCAGGACTTCATCCAGCGCCTGAGCACACTGATCCGGCAGGCCATCGAGCGGCAGCTGCCTGCCTGGATCGAGGCTG
CCAACCAGCGGGAGGAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAAGAAGAGGAGGACGTGGCTGAGAACCGCTACT
TTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAGGAGGAGGAAGAGGAGGATGAAGAGGCCGAGG
AGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAGCACATCCGCATCCTCAAGGTGCTGTGGTGCTTCC
TGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTGCCTTGTGCTCACCGACTTCGGCATCGCAGTCTTCGAGATCCCGCACCAGG
AGTCTCGGGGCAGCAGCCAGCACATCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCGCATGGCGACCTCACCGAGTTTGGCTTCCTCA
TGCCGGAGCTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATCTCGGACGCCGCCAACCTGCACGAGTTCCACG
CGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTCTACGGCAGCCACACCAGCCTGCAGGAGTTCC
TGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGCAGCCAGGGCTGCTTCCCCGTCTACCTGGTCTACAGTGACA
AGCGCATGGTGCAGACGGCCGCCGGGGACTACTCAGGCAACATCGAGTGGGCCAGCTGCACACTCTGTTCAGCCGTGCGGCGCTCCTGCT
GCGCGCCCTCTGAGGCCGTCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCCCAGCACCTCAACGTCATCAAGGCCGACTTCA
ACCCCATGCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGCCGTGTGCCGCTCTCCACCGTGCTGCTGGACC
CCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTGCTCGTGGGGTACCGCTTTGTCACTGCCATCT
TCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAACCAGCTGCGGGCCTCGCTGCAGGACCTGAAGACTGTGGTCATCGCCA
AGACCCCCGGGACGGGAGGCAGCCCCCAGGGCTCCTTTGCGGATGGCCAGCCTGCCGAGCGCAGGGCCAGCAATGACCAGCGTCCCCAGG
AGGTCCCAGCAGAGGCTCTGGCCCCGGCCCCAGCGGAAGTCCCAGCTCCAGCCCCTGCAGCAGCCTCAGCCTCAGGCCCAGCGAAGACTC
CGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCTCCAGCCCCACCCCCAGCCGAGGCCCCTGCCC
AGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCTCGCACTTGCCTGCCTGCCCGTCGCTCCGGCACGTCG
CCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGTTGAAAACGAGGAGCTGAGGCACCTCATGTGGTCCT
CGGTGGTGTTCTACCAGACCCCAGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACCAAGGCTGTGTACTTTGTGCTCCACGACGGCC
TCCGCCGCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTACAACAACAGCCCTTTCCACATCTCCCAGTGCT
TCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTCCGGCTGACGGGTTCCACCCCGATGCAGGTGG
TCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGCACCTCATGGTCGTGCTGTCCTCTCTGGAACGCACGCCCTCGC
CGGAGCCTGTTGACAAGGACTTCTACTCCGAGTTTGGGAACAAGACCACAGGGAAGATGGAGAACTACGAGCTGATCCACTCTAGTCGCG
TCAAGTTTACCTACCCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAAAAGATGGCTGAGCCAGAGAAGGCCCCAGCCC
TCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGCAGGGGCCCCCTGCGCCCCAAGACACTCCTGC
TCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGAGTTTGCCAAAGAGCCGCCGCAGAGAGACAGGT
ACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAGTGCTCATGGGCTACCAGACCTACCCGCAGGCCCTCACCCTCGTCTTCG
ATGACGTGCAAGGTCATGACCTCATGGGCAGTGTCACCCTGGACCACTTTGGGGAGGTGCCAGGTGGCCCGGCTAGAGCCAGCCAGGGCC
GTGAAGTCCAGTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCGCTGTTGGCTCGCCAGTGGGAGGCCCTGTGTG
GCCGTGAGCTGCCTGTCGAGCTCACCGGCTAGCCCAGGCCACAGCCAGCCTGTCGTGTCCAGCCTGACGCCTACTGGGGCAGGGCAGCAG
GCTTTTGTGTTCTCTAAAAATGTTTTATCCTCCCTTTGGTACCTTAATTTGACTGTCCTCGCAGAGAATGTGAACATGTGTGTGTGTTGT
GTTAATTCTTTCTCATGTTGGGAGTGAGAATGCCGGGCCCCTCAGGGCTGTCGGTGTGCTGTCAGCCTCCCACAGGTGGTACAGCCGTGC
ACACCAGTGTCGTGTCTGCTGTTGTGGGACCGTTGTTAACACGTGACACTGTGGGTCTGACTTTCTCTTCTACACGTCCTTTCCTGAAGT
GTCGAGTCCAGTCCTTTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGGCATCTTGCTGCTAATCCTGAGGCTGGTAGCAG
AATGCACATTGGAAGCTCCCACCCCATATTGTTCTTCAAAGTGGAGGTCTCCCCTGATCCAGACAAGTGGGAGAGCCCGTGGGGGCAGGG


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FusionGenePPI for SNRNP48_NISCH


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
SNRNP48RNU11, ELAVL1, ZRSR2, RNU12, SNRPG, SNRPN, ZCRB1, SNRPF, SNRPE, ZMAT5, SNRNP35NISCHIRS4, IRS1, IRS2, CUL3, GRB2, LGR4, FOXH1, HAVCR2, PIK3R3, CNKSR3, UBE2M, CSNK1G2, ODAM, UNC119, MANSC1, KIAA0430, HELZ, PCGF5, SOWAHA, CTBP1, PAN2, EIF4ENIF1, KIAA1671, PIK3R1, CREBBP, ARID3A, PCGF3, ERF, POM121C, NUP50, UBE2A


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221709_8075091505ITGA5
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014709_807-9516ITGA5
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322709_8075091505ITGA5
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221660_8695091505LIMK
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014660_869-9516LIMK
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322660_8695091505LIMK
TgeneNISCHchr6:7595334chr3:52518529ENST00000420808+014245_869-9516PAK1


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
TgeneNISCHchr6:7595334chr3:52518529ENST00000345716+1221245_8695091505PAK1
TgeneNISCHchr6:7595334chr3:52518529ENST00000479054+1322245_8695091505PAK1


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for SNRNP48_NISCH


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneNISCHQ9Y2I1DB00697TizanidineNischarinsmall moleculeapproved|investigational
TgeneNISCHQ9Y2I1DB09242MoxonidineNischarinsmall moleculeapproved|investigational

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RelatedDiseases for SNRNP48_NISCH


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneNISCHC0020649Hypotension2CTD_human
TgeneNISCHC0428977Bradycardia1CTD_human