![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 35178 |
FusionGeneSummary for SNRNP48_NISCH |
![]() |
Fusion gene information | Fusion gene name: SNRNP48_NISCH | Fusion gene ID: 35178 | Hgene | Tgene | Gene symbol | SNRNP48 | NISCH | Gene ID | 154007 | 11188 |
Gene name | small nuclear ribonucleoprotein U11/U12 subunit 48 | nischarin | |
Synonyms | C6orf151|dJ336K20B.1|dJ512B11.2 | I-1|IR1|IRAS|hIRAS | |
Cytomap | 6p24.3 | 3p21.1 | |
Type of gene | protein-coding | protein-coding | |
Description | U11/U12 small nuclear ribonucleoprotein 48 kDa proteinU11-48KU11/U12 snRNP 48 kDa proteinU11/U12 snRNP 48KU11/U12-48Ksmall nuclear ribonucleoprotein 48kDa (U11/U12)small nuclear ribonucleoprotein, U11/U12 48KDa subunit | nischarinI-1 receptor candidate proteinI1R candidate proteinimidazoline receptor 1imidazoline receptor antisera selected | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q6IEG0 | Q9Y2I1 | |
Ensembl transtripts involved in fusion gene | ENST00000342415, | ENST00000479054, ENST00000345716, ENST00000488380, ENST00000420808, ENST00000464280, | |
Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 7 X 6 X 4=168 |
# samples | 2 | 7 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(7/168*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SNRNP48 [Title/Abstract] AND NISCH [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-E2-A10A-01A | SNRNP48 | chr6 | 7595334 | + | NISCH | chr3 | 52518529 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000342415 | ENST00000479054 | SNRNP48 | chr6 | 7595334 | + | NISCH | chr3 | 52518529 | + |
In-frame | ENST00000342415 | ENST00000345716 | SNRNP48 | chr6 | 7595334 | + | NISCH | chr3 | 52518529 | + |
5CDS-intron | ENST00000342415 | ENST00000488380 | SNRNP48 | chr6 | 7595334 | + | NISCH | chr3 | 52518529 | + |
5CDS-intron | ENST00000342415 | ENST00000420808 | SNRNP48 | chr6 | 7595334 | + | NISCH | chr3 | 52518529 | + |
5CDS-intron | ENST00000342415 | ENST00000464280 | SNRNP48 | chr6 | 7595334 | + | NISCH | chr3 | 52518529 | + |
Top |
FusionProtFeatures for SNRNP48_NISCH |
![]() |
Hgene | Tgene |
SNRNP48 | NISCH |
Likely involved in U12-type 5' splice site recognition.{ECO:0000269|PubMed:19217400}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SNRNP48 | chr6:7595334 | chr3:52518529 | ENST00000342415 | + | 4 | 9 | 55_82 | 135 | 340 | Zinc finger | CHHC U11-48K-type |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 634_695 | 509 | 1505 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 634_695 | -9 | 516 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 634_695 | 509 | 1505 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 1048_1104 | 509 | 1505 | Compositional bias | Note=Ala/Pro-rich |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 629_691 | 509 | 1505 | Compositional bias | Note=Glu-rich |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 1048_1104 | -9 | 516 | Compositional bias | Note=Ala/Pro-rich |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 629_691 | -9 | 516 | Compositional bias | Note=Glu-rich |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 1048_1104 | 509 | 1505 | Compositional bias | Note=Ala/Pro-rich |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 629_691 | 509 | 1505 | Compositional bias | Note=Glu-rich |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 11_121 | -9 | 516 | Domain | PX |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 120_695 | -9 | 516 | Region | Note=Necessary for homooligomerization and targeting to endosomes |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 2_133 | -9 | 516 | Region | Note=Necessary for binding to phosphoinositide-3-P%3B not sufficient for targeting to endosomes |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 288_309 | -9 | 516 | Repeat | Note=LRR 1 |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 311_332 | -9 | 516 | Repeat | Note=LRR 2 |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 333_354 | -9 | 516 | Repeat | Note=LRR 3 |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 356_377 | -9 | 516 | Repeat | Note=LRR 4 |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 378_399 | -9 | 516 | Repeat | Note=LRR 5 |
Tgene | >NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 403_424 | -9 | 516 | Repeat | Note=LRR 6 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SNRNP48 | chr6:7595334 | chr3:52518529 | ENST00000342415 | + | 4 | 9 | 294_335 | 135 | 340 | Compositional bias | Note=Arg-rich |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 11_121 | 509 | 1505 | Domain | PX |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 11_121 | 509 | 1505 | Domain | PX |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 120_695 | 509 | 1505 | Region | Note=Necessary for homooligomerization and targeting to endosomes |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 2_133 | 509 | 1505 | Region | Note=Necessary for binding to phosphoinositide-3-P%3B not sufficient for targeting to endosomes |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 120_695 | 509 | 1505 | Region | Note=Necessary for homooligomerization and targeting to endosomes |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 2_133 | 509 | 1505 | Region | Note=Necessary for binding to phosphoinositide-3-P%3B not sufficient for targeting to endosomes |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 288_309 | 509 | 1505 | Repeat | Note=LRR 1 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 311_332 | 509 | 1505 | Repeat | Note=LRR 2 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 333_354 | 509 | 1505 | Repeat | Note=LRR 3 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 356_377 | 509 | 1505 | Repeat | Note=LRR 4 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 378_399 | 509 | 1505 | Repeat | Note=LRR 5 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 403_424 | 509 | 1505 | Repeat | Note=LRR 6 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 288_309 | 509 | 1505 | Repeat | Note=LRR 1 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 311_332 | 509 | 1505 | Repeat | Note=LRR 2 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 333_354 | 509 | 1505 | Repeat | Note=LRR 3 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 356_377 | 509 | 1505 | Repeat | Note=LRR 4 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 378_399 | 509 | 1505 | Repeat | Note=LRR 5 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 403_424 | 509 | 1505 | Repeat | Note=LRR 6 |
Top |
FusionGeneSequence for SNRNP48_NISCH |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000479054_chr3_52518529_+_1131aa MEGEPPPVEERRRLQEELNEFVESGCRTLEEVTASLGWDLDSLDPGEEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEE DEMYNPEFFYENVKIPSITLNKDSQFQIIKQARTAVGKDSDCYNQRIMFVQEEALASSLSSTDSLTPEHQPIAQGCSDSLESIPAGQAAS DDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEE EEEDVAENRYFEMGPPDVEEEEGGGQGEEEEEEEEDEEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQGSIRQFAACLVLTDF GIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCLVLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPIL YGSHTSLQEFLRQLLTFYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEAVKSAAIPYWLLLTP QHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCTQPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRAS LQDLKTVVIAKTPGTGGSPQGSFADGQPAERRASNDQRPQEVPAEALAPAPAEVPAPAPAAASASGPAKTPAPAEASTSALVPEETPVEA PAPPPAEAPAQYPSEHLIQATSEENQIPSHLPACPSLRHVASLRGSAIIELFHSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLST KAVYFVLHDGLRRYFSEPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTRDSYLTHCFLQHLMV VLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYPSEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCC RGPLRPKTLLLTSSEIFLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDDVQGHDLMGSVTLDHFGEV >In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000345716_chr3_52518529_+_1131aa MEGEPPPVEERRRLQEELNEFVESGCRTLEEVTASLGWDLDSLDPGEEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEE DEMYNPEFFYENVKIPSITLNKDSQFQIIKQARTAVGKDSDCYNQRIMFVQEEALASSLSSTDSLTPEHQPIAQGCSDSLESIPAGQAAS DDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEE EEEDVAENRYFEMGPPDVEEEEGGGQGEEEEEEEEDEEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQGSIRQFAACLVLTDF GIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCLVLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPIL YGSHTSLQEFLRQLLTFYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEAVKSAAIPYWLLLTP QHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCTQPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRAS LQDLKTVVIAKTPGTGGSPQGSFADGQPAERRASNDQRPQEVPAEALAPAPAEVPAPAPAAASASGPAKTPAPAEASTSALVPEETPVEA PAPPPAEAPAQYPSEHLIQATSEENQIPSHLPACPSLRHVASLRGSAIIELFHSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLST KAVYFVLHDGLRRYFSEPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTRDSYLTHCFLQHLMV VLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYPSEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCC RGPLRPKTLLLTSSEIFLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDDVQGHDLMGSVTLDHFGEV |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000479054_chr3_52518529_+_3393nt ATGGAGGGCGAGCCTCCACCTGTGGAGGAGCGGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACGTTGGAG GAGGTGACCGCGTCCCTGGGCTGGGACCTAGATAGTCTGGATCCCGGGGAAGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATAC GATTCCAATCATCACATGCCTAAATCATCTTTGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAG GATGAAATGTATAATCCTGAGTTTTTCTATGAAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCAGATAATTAAA CAAGCTAGAACTGCAGTTGGGAAAGACAGTGATTGTTATAATCAAAGAATCATGTTCGTTCAGGAGGAGGCCCTGGCCAGCAGCCTCTCG TCCACTGACAGTCTGACTCCCGAGCACCAGCCCATTGCCCAGGGATGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCC GATGATTTAAGGGACGTGCCAGGAGCTGTTGGTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGGTGCCGGGGTCTGGCCAG ATCATCTTCCTGCCCTTCACCTGCATTGGCTACACGGCCACCAATCAGGACTTCATCCAGCGCCTGAGCACACTGATCCGGCAGGCCATC GAGCGGCAGCTGCCTGCCTGGATCGAGGCTGCCAACCAGCGGGAGGAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAA GAAGAGGAGGACGTGGCTGAGAACCGCTACTTTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAG GAGGAGGAAGAGGAGGATGAAGAGGCCGAGGAGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAGCAC ATCCGCATCCTCAAGGTGCTGTGGTGCTTCCTGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTGCCTTGTGCTCACCGACTTC GGCATCGCAGTCTTCGAGATCCCGCACCAGGAGTCTCGGGGCAGCAGCCAGCACATCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCG CATGGCGACCTCACCGAGTTTGGCTTCCTCATGCCGGAGCTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATC TCGGACGCCGCCAACCTGCACGAGTTCCACGCGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTC TACGGCAGCCACACCAGCCTGCAGGAGTTCCTGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGCAGCCAGGGC TGCTTCCCCGTCTACCTGGTCTACAGTGACAAGCGCATGGTGCAGACGGCCGCCGGGGACTACTCAGGCAACATCGAGTGGGCCAGCTGC ACACTCTGTTCAGCCGTGCGGCGCTCCTGCTGCGCGCCCTCTGAGGCCGTCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCC CAGCACCTCAACGTCATCAAGGCCGACTTCAACCCCATGCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGC CGTGTGCCGCTCTCCACCGTGCTGCTGGACCCCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTG CTCGTGGGGTACCGCTTTGTCACTGCCATCTTCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAACCAGCTGCGGGCCTCG CTGCAGGACCTGAAGACTGTGGTCATCGCCAAGACCCCCGGGACGGGAGGCAGCCCCCAGGGCTCCTTTGCGGATGGCCAGCCTGCCGAG CGCAGGGCCAGCAATGACCAGCGTCCCCAGGAGGTCCCAGCAGAGGCTCTGGCCCCGGCCCCAGCGGAAGTCCCAGCTCCAGCCCCTGCA GCAGCCTCAGCCTCAGGCCCAGCGAAGACTCCGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCT CCAGCCCCACCCCCAGCCGAGGCCCCTGCCCAGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCTCGCAC TTGCCTGCCTGCCCGTCGCTCCGGCACGTCGCCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGTTGAA AACGAGGAGCTGAGGCACCTCATGTGGTCCTCGGTGGTGTTCTACCAGACCCCAGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACC AAGGCTGTGTACTTTGTGCTCCACGACGGCCTCCGCCGCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTAC AACAACAGCCCTTTCCACATCTCCCAGTGCTTCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTC CGGCTGACGGGTTCCACCCCGATGCAGGTGGTCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGCACCTCATGGTC GTGCTGTCCTCTCTGGAACGCACGCCCTCGCCGGAGCCTGTTGACAAGGACTTCTACTCCGAGTTTGGGAACAAGACCACAGGGAAGATG GAGAACTACGAGCTGATCCACTCTAGTCGCGTCAAGTTTACCTACCCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAA AAGATGGCTGAGCCAGAGAAGGCCCCAGCCCTCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGC AGGGGCCCCCTGCGCCCCAAGACACTCCTGCTCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGAG TTTGCCAAAGAGCCGCCGCAGAGAGACAGGTACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAGTGCTCATGGGCTACCAG ACCTACCCGCAGGCCCTCACCCTCGTCTTCGATGACGTGCAAGGTCATGACCTCATGGGCAGTGTCACCCTGGACCACTTTGGGGAGGTG CCAGGTGGCCCGGCTAGAGCCAGCCAGGGCCGTGAAGTCCAGTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCG >In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000345716_chr3_52518529_+_3393nt ATGGAGGGCGAGCCTCCACCTGTGGAGGAGCGGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACGTTGGAG GAGGTGACCGCGTCCCTGGGCTGGGACCTAGATAGTCTGGATCCCGGGGAAGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATAC GATTCCAATCATCACATGCCTAAATCATCTTTGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAG GATGAAATGTATAATCCTGAGTTTTTCTATGAAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCAGATAATTAAA CAAGCTAGAACTGCAGTTGGGAAAGACAGTGATTGTTATAATCAAAGAATCATGTTCGTTCAGGAGGAGGCCCTGGCCAGCAGCCTCTCG TCCACTGACAGTCTGACTCCCGAGCACCAGCCCATTGCCCAGGGATGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCC GATGATTTAAGGGACGTGCCAGGAGCTGTTGGTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGGTGCCGGGGTCTGGCCAG ATCATCTTCCTGCCCTTCACCTGCATTGGCTACACGGCCACCAATCAGGACTTCATCCAGCGCCTGAGCACACTGATCCGGCAGGCCATC GAGCGGCAGCTGCCTGCCTGGATCGAGGCTGCCAACCAGCGGGAGGAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAA GAAGAGGAGGACGTGGCTGAGAACCGCTACTTTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAG GAGGAGGAAGAGGAGGATGAAGAGGCCGAGGAGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAGCAC ATCCGCATCCTCAAGGTGCTGTGGTGCTTCCTGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTGCCTTGTGCTCACCGACTTC GGCATCGCAGTCTTCGAGATCCCGCACCAGGAGTCTCGGGGCAGCAGCCAGCACATCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCG CATGGCGACCTCACCGAGTTTGGCTTCCTCATGCCGGAGCTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATC TCGGACGCCGCCAACCTGCACGAGTTCCACGCGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTC TACGGCAGCCACACCAGCCTGCAGGAGTTCCTGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGCAGCCAGGGC TGCTTCCCCGTCTACCTGGTCTACAGTGACAAGCGCATGGTGCAGACGGCCGCCGGGGACTACTCAGGCAACATCGAGTGGGCCAGCTGC ACACTCTGTTCAGCCGTGCGGCGCTCCTGCTGCGCGCCCTCTGAGGCCGTCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCC CAGCACCTCAACGTCATCAAGGCCGACTTCAACCCCATGCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGC CGTGTGCCGCTCTCCACCGTGCTGCTGGACCCCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTG CTCGTGGGGTACCGCTTTGTCACTGCCATCTTCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAACCAGCTGCGGGCCTCG CTGCAGGACCTGAAGACTGTGGTCATCGCCAAGACCCCCGGGACGGGAGGCAGCCCCCAGGGCTCCTTTGCGGATGGCCAGCCTGCCGAG CGCAGGGCCAGCAATGACCAGCGTCCCCAGGAGGTCCCAGCAGAGGCTCTGGCCCCGGCCCCAGCGGAAGTCCCAGCTCCAGCCCCTGCA GCAGCCTCAGCCTCAGGCCCAGCGAAGACTCCGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCT CCAGCCCCACCCCCAGCCGAGGCCCCTGCCCAGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCTCGCAC TTGCCTGCCTGCCCGTCGCTCCGGCACGTCGCCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGTTGAA AACGAGGAGCTGAGGCACCTCATGTGGTCCTCGGTGGTGTTCTACCAGACCCCAGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACC AAGGCTGTGTACTTTGTGCTCCACGACGGCCTCCGCCGCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTAC AACAACAGCCCTTTCCACATCTCCCAGTGCTTCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTC CGGCTGACGGGTTCCACCCCGATGCAGGTGGTCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGCACCTCATGGTC GTGCTGTCCTCTCTGGAACGCACGCCCTCGCCGGAGCCTGTTGACAAGGACTTCTACTCCGAGTTTGGGAACAAGACCACAGGGAAGATG GAGAACTACGAGCTGATCCACTCTAGTCGCGTCAAGTTTACCTACCCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAA AAGATGGCTGAGCCAGAGAAGGCCCCAGCCCTCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGC AGGGGCCCCCTGCGCCCCAAGACACTCCTGCTCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGAG TTTGCCAAAGAGCCGCCGCAGAGAGACAGGTACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAGTGCTCATGGGCTACCAG ACCTACCCGCAGGCCCTCACCCTCGTCTTCGATGACGTGCAAGGTCATGACCTCATGGGCAGTGTCACCCTGGACCACTTTGGGGAGGTG CCAGGTGGCCCGGCTAGAGCCAGCCAGGGCCGTGAAGTCCAGTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000479054_chr3_52518529_+_4038nt GAGGCCTGCGCGTGCGGTCTGCAGTTCGGCCGCTTCCTCTTGGCGGGTGGGCTGCAGCTATGGAGGGCGAGCCTCCACCTGTGGAGGAGC GGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACGTTGGAGGAGGTGACCGCGTCCCTGGGCTGGGACCTAG ATAGTCTGGATCCCGGGGAAGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATACGATTCCAATCATCACATGCCTAAATCATCTT TGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGATGAAATGTATAATCCTGAGTTTTTCTATG AAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCAGATAATTAAACAAGCTAGAACTGCAGTTGGGAAAGACAGTG ATTGTTATAATCAAAGAATCATGTTCGTTCAGGAGGAGGCCCTGGCCAGCAGCCTCTCGTCCACTGACAGTCTGACTCCCGAGCACCAGC CCATTGCCCAGGGATGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCCGATGATTTAAGGGACGTGCCAGGAGCTGTTG GTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGGTGCCGGGGTCTGGCCAGATCATCTTCCTGCCCTTCACCTGCATTGGCT ACACGGCCACCAATCAGGACTTCATCCAGCGCCTGAGCACACTGATCCGGCAGGCCATCGAGCGGCAGCTGCCTGCCTGGATCGAGGCTG CCAACCAGCGGGAGGAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAAGAAGAGGAGGACGTGGCTGAGAACCGCTACT TTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAGGAGGAGGAAGAGGAGGATGAAGAGGCCGAGG AGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAGCACATCCGCATCCTCAAGGTGCTGTGGTGCTTCC TGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTGCCTTGTGCTCACCGACTTCGGCATCGCAGTCTTCGAGATCCCGCACCAGG AGTCTCGGGGCAGCAGCCAGCACATCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCGCATGGCGACCTCACCGAGTTTGGCTTCCTCA TGCCGGAGCTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATCTCGGACGCCGCCAACCTGCACGAGTTCCACG CGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTCTACGGCAGCCACACCAGCCTGCAGGAGTTCC TGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGCAGCCAGGGCTGCTTCCCCGTCTACCTGGTCTACAGTGACA AGCGCATGGTGCAGACGGCCGCCGGGGACTACTCAGGCAACATCGAGTGGGCCAGCTGCACACTCTGTTCAGCCGTGCGGCGCTCCTGCT GCGCGCCCTCTGAGGCCGTCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCCCAGCACCTCAACGTCATCAAGGCCGACTTCA ACCCCATGCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGCCGTGTGCCGCTCTCCACCGTGCTGCTGGACC CCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTGCTCGTGGGGTACCGCTTTGTCACTGCCATCT TCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAACCAGCTGCGGGCCTCGCTGCAGGACCTGAAGACTGTGGTCATCGCCA AGACCCCCGGGACGGGAGGCAGCCCCCAGGGCTCCTTTGCGGATGGCCAGCCTGCCGAGCGCAGGGCCAGCAATGACCAGCGTCCCCAGG AGGTCCCAGCAGAGGCTCTGGCCCCGGCCCCAGCGGAAGTCCCAGCTCCAGCCCCTGCAGCAGCCTCAGCCTCAGGCCCAGCGAAGACTC CGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCTCCAGCCCCACCCCCAGCCGAGGCCCCTGCCC AGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCTCGCACTTGCCTGCCTGCCCGTCGCTCCGGCACGTCG CCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGTTGAAAACGAGGAGCTGAGGCACCTCATGTGGTCCT CGGTGGTGTTCTACCAGACCCCAGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACCAAGGCTGTGTACTTTGTGCTCCACGACGGCC TCCGCCGCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTACAACAACAGCCCTTTCCACATCTCCCAGTGCT TCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTCCGGCTGACGGGTTCCACCCCGATGCAGGTGG TCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGCACCTCATGGTCGTGCTGTCCTCTCTGGAACGCACGCCCTCGC CGGAGCCTGTTGACAAGGACTTCTACTCCGAGTTTGGGAACAAGACCACAGGGAAGATGGAGAACTACGAGCTGATCCACTCTAGTCGCG TCAAGTTTACCTACCCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAAAAGATGGCTGAGCCAGAGAAGGCCCCAGCCC TCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGCAGGGGCCCCCTGCGCCCCAAGACACTCCTGC TCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGAGTTTGCCAAAGAGCCGCCGCAGAGAGACAGGT ACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAGTGCTCATGGGCTACCAGACCTACCCGCAGGCCCTCACCCTCGTCTTCG ATGACGTGCAAGGTCATGACCTCATGGGCAGTGTCACCCTGGACCACTTTGGGGAGGTGCCAGGTGGCCCGGCTAGAGCCAGCCAGGGCC GTGAAGTCCAGTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCGCTGTTGGCTCGCCAGTGGGAGGCCCTGTGTG GCCGTGAGCTGCCTGTCGAGCTCACCGGCTAGCCCAGGCCACAGCCAGCCTGTCGTGTCCAGCCTGACGCCTACTGGGGCAGGGCAGCAG GCTTTTGTGTTCTCTAAAAATGTTTTATCCTCCCTTTGGTACCTTAATTTGACTGTCCTCGCAGAGAATGTGAACATGTGTGTGTGTTGT GTTAATTCTTTCTCATGTTGGGAGTGAGAATGCCGGGCCCCTCAGGGCTGTCGGTGTGCTGTCAGCCTCCCACAGGTGGTACAGCCGTGC ACACCAGTGTCGTGTCTGCTGTTGTGGGACCGTTGTTAACACGTGACACTGTGGGTCTGACTTTCTCTTCTACACGTCCTTTCCTGAAGT GTCGAGTCCAGTCCTTTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGGCATCTTGCTGCTAATCCTGAGGCTGGTAGCAG AATGCACATTGGAAGCTCCCACCCCATATTGTTCTTCAAAGTGGAGGTCTCCCCTGATCCAGACAAGTGGGAGAGCCCGTGGGGGCAGGG >In-frame_SNRNP48_ENST00000342415_chr6_7595334_+_NISCH_ENST00000345716_chr3_52518529_+_4041nt GAGGCCTGCGCGTGCGGTCTGCAGTTCGGCCGCTTCCTCTTGGCGGGTGGGCTGCAGCTATGGAGGGCGAGCCTCCACCTGTGGAGGAGC GGCGGCGGCTGCAGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACGTTGGAGGAGGTGACCGCGTCCCTGGGCTGGGACCTAG ATAGTCTGGATCCCGGGGAAGAGGAGGCGGCGGAGGATGAAGTTGTGATATGTCCATACGATTCCAATCATCACATGCCTAAATCATCTT TGGCAAAGCACATGGCATCTTGTAGATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGATGAAATGTATAATCCTGAGTTTTTCTATG AAAATGTGAAGATACCTTCGATTACTTTGAATAAGGACTCACAATTCCAGATAATTAAACAAGCTAGAACTGCAGTTGGGAAAGACAGTG ATTGTTATAATCAAAGAATCATGTTCGTTCAGGAGGAGGCCCTGGCCAGCAGCCTCTCGTCCACTGACAGTCTGACTCCCGAGCACCAGC CCATTGCCCAGGGATGTTCTGATTCCTTGGAGTCCATCCCTGCGGGACAGGCAGCTTCCGATGATTTAAGGGACGTGCCAGGAGCTGTTG GTGGTGCAAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGGTGCCGGGGTCTGGCCAGATCATCTTCCTGCCCTTCACCTGCATTGGCT ACACGGCCACCAATCAGGACTTCATCCAGCGCCTGAGCACACTGATCCGGCAGGCCATCGAGCGGCAGCTGCCTGCCTGGATCGAGGCTG CCAACCAGCGGGAGGAGGGCCAGGGTGAACAGGGCGAGGAGGAGGATGAGGAGGAGGAAGAAGAGGAGGACGTGGCTGAGAACCGCTACT TTGAAATGGGGCCCCCAGACGTGGAGGAGGAGGAGGGAGGAGGCCAGGGGGAGGAAGAGGAGGAGGAAGAGGAGGATGAAGAGGCCGAGG AGGAGCGCCTGGCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCTGGAGCACATCCGCATCCTCAAGGTGCTGTGGTGCTTCC TGATCCATGTGCAGGGCAGTATCCGCCAGTTCGCCGCCTGCCTTGTGCTCACCGACTTCGGCATCGCAGTCTTCGAGATCCCGCACCAGG AGTCTCGGGGCAGCAGCCAGCACATCCTCTCCTCCCTGCGCTTTGTCTTTTGCTTCCCGCATGGCGACCTCACCGAGTTTGGCTTCCTCA TGCCGGAGCTGTGTCTGGTGCTCAAGGTACGGCACAGTGAGAACACGCTCTTCATTATCTCGGACGCCGCCAACCTGCACGAGTTCCACG CGGACCTGCGCTCATGCTTTGCACCCCAGCACATGGCCATGCTGTGTAGCCCCATCCTCTACGGCAGCCACACCAGCCTGCAGGAGTTCC TGCGCCAGCTGCTCACCTTCTACAAGGTGGCTGGCGGCTGCCAGGAGCGCAGCCAGGGCTGCTTCCCCGTCTACCTGGTCTACAGTGACA AGCGCATGGTGCAGACGGCCGCCGGGGACTACTCAGGCAACATCGAGTGGGCCAGCTGCACACTCTGTTCAGCCGTGCGGCGCTCCTGCT GCGCGCCCTCTGAGGCCGTCAAGTCCGCCGCCATCCCCTACTGGCTGTTGCTCACGCCCCAGCACCTCAACGTCATCAAGGCCGACTTCA ACCCCATGCCCAACCGTGGCACCCACAACTGTCGCAACCGCAACAGCTTCAAGCTCAGCCGTGTGCCGCTCTCCACCGTGCTGCTGGACC CCACACGCAGCTGTACCCAGCCTCGGGGCGCCTTTGCTGATGGCCACGTGCTAGAGCTGCTCGTGGGGTACCGCTTTGTCACTGCCATCT TCGTGCTGCCCCACGAGAAGTTCCACTTCCTGCGCGTCTACAACCAGCTGCGGGCCTCGCTGCAGGACCTGAAGACTGTGGTCATCGCCA AGACCCCCGGGACGGGAGGCAGCCCCCAGGGCTCCTTTGCGGATGGCCAGCCTGCCGAGCGCAGGGCCAGCAATGACCAGCGTCCCCAGG AGGTCCCAGCAGAGGCTCTGGCCCCGGCCCCAGCGGAAGTCCCAGCTCCAGCCCCTGCAGCAGCCTCAGCCTCAGGCCCAGCGAAGACTC CGGCCCCAGCAGAGGCCTCAACTTCAGCTTTGGTCCCAGAGGAGACGCCAGTGGAAGCTCCAGCCCCACCCCCAGCCGAGGCCCCTGCCC AGTACCCGAGTGAGCACCTCATCCAGGCCACCTCGGAGGAGAATCAGATCCCCTCGCACTTGCCTGCCTGCCCGTCGCTCCGGCACGTCG CCAGCCTGCGGGGCAGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGTTGAAAACGAGGAGCTGAGGCACCTCATGTGGTCCT CGGTGGTGTTCTACCAGACCCCAGGGCTGGAGGTGACTGCCTGCGTGCTGCTCTCCACCAAGGCTGTGTACTTTGTGCTCCACGACGGCC TCCGCCGCTACTTCTCAGAGCCACTGCAGGATTTCTGGCATCAGAAAAACACCGACTACAACAACAGCCCTTTCCACATCTCCCAGTGCT TCGTGCTAAAGCTTAGTGACCTGCAGTCAGTCAATGTGGGGCTTTTCGACCAGCATTTCCGGCTGACGGGTTCCACCCCGATGCAGGTGG TCACGTGCTTGACGCGGGACAGCTACCTGACGCACTGCTTCCTCCAGCACCTCATGGTCGTGCTGTCCTCTCTGGAACGCACGCCCTCGC CGGAGCCTGTTGACAAGGACTTCTACTCCGAGTTTGGGAACAAGACCACAGGGAAGATGGAGAACTACGAGCTGATCCACTCTAGTCGCG TCAAGTTTACCTACCCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGCCCAAAAGATGGCTGAGCCAGAGAAGGCCCCAGCCC TCAGCATCCTGCTGTACGTGCAGGCCTTCCAGGTGGGCATGCCACCCCCTGGGTGCTGCAGGGGCCCCCTGCGCCCCAAGACACTCCTGC TCACCAGCTCCGAGATCTTCCTCCTGGATGAGGACTGTGTCCACTACCCACTGCCCGAGTTTGCCAAAGAGCCGCCGCAGAGAGACAGGT ACCGGCTGGACGATGGCCGCCGCGTCCGGGACCTGGACCGAGTGCTCATGGGCTACCAGACCTACCCGCAGGCCCTCACCCTCGTCTTCG ATGACGTGCAAGGTCATGACCTCATGGGCAGTGTCACCCTGGACCACTTTGGGGAGGTGCCAGGTGGCCCGGCTAGAGCCAGCCAGGGCC GTGAAGTCCAGTGGCAGGTGTTTGTCCCCAGTGCTGAGAGCAGAGAGAAGCTCATCTCGCTGTTGGCTCGCCAGTGGGAGGCCCTGTGTG GCCGTGAGCTGCCTGTCGAGCTCACCGGCTAGCCCAGGCCACAGCCAGCCTGTCGTGTCCAGCCTGACGCCTACTGGGGCAGGGCAGCAG GCTTTTGTGTTCTCTAAAAATGTTTTATCCTCCCTTTGGTACCTTAATTTGACTGTCCTCGCAGAGAATGTGAACATGTGTGTGTGTTGT GTTAATTCTTTCTCATGTTGGGAGTGAGAATGCCGGGCCCCTCAGGGCTGTCGGTGTGCTGTCAGCCTCCCACAGGTGGTACAGCCGTGC ACACCAGTGTCGTGTCTGCTGTTGTGGGACCGTTGTTAACACGTGACACTGTGGGTCTGACTTTCTCTTCTACACGTCCTTTCCTGAAGT GTCGAGTCCAGTCCTTTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGGCATCTTGCTGCTAATCCTGAGGCTGGTAGCAG AATGCACATTGGAAGCTCCCACCCCATATTGTTCTTCAAAGTGGAGGTCTCCCCTGATCCAGACAAGTGGGAGAGCCCGTGGGGGCAGGG |
Top |
FusionGenePPI for SNRNP48_NISCH |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SNRNP48 | RNU11, ELAVL1, ZRSR2, RNU12, SNRPG, SNRPN, ZCRB1, SNRPF, SNRPE, ZMAT5, SNRNP35 | NISCH | IRS4, IRS1, IRS2, CUL3, GRB2, LGR4, FOXH1, HAVCR2, PIK3R3, CNKSR3, UBE2M, CSNK1G2, ODAM, UNC119, MANSC1, KIAA0430, HELZ, PCGF5, SOWAHA, CTBP1, PAN2, EIF4ENIF1, KIAA1671, PIK3R1, CREBBP, ARID3A, PCGF3, ERF, POM121C, NUP50, UBE2A |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 709_807 | 509 | 1505 | ITGA5 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 709_807 | -9 | 516 | ITGA5 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 709_807 | 509 | 1505 | ITGA5 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 660_869 | 509 | 1505 | LIMK |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 660_869 | -9 | 516 | LIMK |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 660_869 | 509 | 1505 | LIMK |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000420808 | + | 0 | 14 | 245_869 | -9 | 516 | PAK1 |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000345716 | + | 12 | 21 | 245_869 | 509 | 1505 | PAK1 |
Tgene | NISCH | chr6:7595334 | chr3:52518529 | ENST00000479054 | + | 13 | 22 | 245_869 | 509 | 1505 | PAK1 |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for SNRNP48_NISCH |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | NISCH | Q9Y2I1 | DB00697 | Tizanidine | Nischarin | small molecule | approved|investigational |
Tgene | NISCH | Q9Y2I1 | DB09242 | Moxonidine | Nischarin | small molecule | approved|investigational |
Top |
RelatedDiseases for SNRNP48_NISCH |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | NISCH | C0020649 | Hypotension | 2 | CTD_human |
Tgene | NISCH | C0428977 | Bradycardia | 1 | CTD_human |