![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 35089 |
FusionGeneSummary for SND1_MYOG |
![]() |
Fusion gene information | Fusion gene name: SND1_MYOG | Fusion gene ID: 35089 | Hgene | Tgene | Gene symbol | SND1 | MYOG | Gene ID | 27044 | 4656 |
Gene name | staphylococcal nuclease and tudor domain containing 1 | myogenin | |
Synonyms | TDRD11|Tudor-SN|p100 | MYF4|bHLHc3|myf-4 | |
Cytomap | 7q32.1 | 1q32.1 | |
Type of gene | protein-coding | protein-coding | |
Description | staphylococcal nuclease domain-containing protein 1EBNA2 coactivator p100testis tissue sperm-binding protein Li 82Ptudor domain-containing protein 11 | myogeninclass C basic helix-loop-helix protein 3myogenic factor 4 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q7KZF4 | P15173 | |
Ensembl transtripts involved in fusion gene | ENST00000354725, ENST00000467238, | ENST00000241651, | |
Fusion gene scores | * DoF score | 13 X 14 X 7=1274 | 1 X 1 X 1=1 |
# samples | 20 | 4 | |
** MAII score | log2(20/1274*10)=-2.67129337248158 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/1*10)=5.32192809488736 | |
Context | PubMed: SND1 [Title/Abstract] AND MYOG [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | MYOG | GO:0045944 | positive regulation of transcription by RNA polymerase II | 11076940 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BC006347 | SND1 | chr7 | 127527996 | - | MYOG | chr1 | 203055113 | - | ||
ChiTaRS3.1 | BF308961 | SND1 | chr7 | 127527996 | - | MYOG | chr1 | 203055113 | - | ||
ChiTaRS3.1 | BF309401 | SND1 | chr7 | 127527996 | - | MYOG | chr1 | 203055113 | - | ||
ChiTaRS3.1 | BF204429 | SND1 | chr7 | 127527996 | - | MYOG | chr1 | 203055113 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000354725 | ENST00000241651 | SND1 | chr7 | 127527996 | - | MYOG | chr1 | 203055113 | - |
intron-5UTR | ENST00000467238 | ENST00000241651 | SND1 | chr7 | 127527996 | - | MYOG | chr1 | 203055113 | - |
Top |
FusionProtFeatures for SND1_MYOG |
![]() |
Hgene | Tgene |
SND1 | MYOG |
Functions as a bridging factor between STAT6 and thebasal transcription factor. Plays a role in PIM1 regulation of MYBactivity. Functions as a transcriptional coactivator for theEpstein-Barr virus nuclear antigen 2 (EBNA2).{ECO:0000269|PubMed:7651391}. | Acts as a transcriptional activator that promotestranscription of muscle-specific target genes and plays a role inmuscle differentiation, cell cycle exit and muscle atrophy.Essential for the development of functional embryonic skeletalfiber muscle differentiation. However is dispensable for postnatalskeletal muscle growth; phosphorylation by CAMK2G inhibits itstranscriptional activity in respons to muscle activity. Requiredfor the recruitment of the FACT complex to muscle-specificpromoter regions, thus promoting gene expression initiation.During terminal myoblast differentiation, plays a role as a strongactivator of transcription at loci with an open chromatinstructure previously initiated by MYOD1. Together with MYF5 andMYOD1, co-occupies muscle-specific gene promoter core regionsduring myogenesis. Cooperates also with myocyte-specific enhancerfactor MEF2D and BRG1-dependent recruitment of SWI/SNF chromatin-remodeling enzymes to alter chromatin structure at myogenic lategene promoters. Facilitates cell cycle exit during terminal muscledifferentiation through the up-regulation of miR-20a expression,which in turn represses genes involved in cell cycle progression.Binds to the E-box containing (E1) promoter region of the miR-20agene. Plays also a role in preventing reversal of muscle celldifferentiation. Contributes to the atrophy-related geneexpression in adult denervated muscles. Induces fibroblasts todifferentiate into myoblasts (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for SND1_MYOG |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for SND1_MYOG |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for SND1_MYOG |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for SND1_MYOG |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SND1 | C0004352 | Autistic Disorder | 1 | CTD_human |
Hgene | SND1 | C0024121 | Lung Neoplasms | 1 | CTD_human |