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Fusion gene ID: 35088 |
FusionGeneSummary for SND1_MIR548AI |
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Fusion gene information | Fusion gene name: SND1_MIR548AI | Fusion gene ID: 35088 | Hgene | Tgene | Gene symbol | SND1 | MIR548AI | Gene ID | 27044 | 100616347 |
Gene name | staphylococcal nuclease and tudor domain containing 1 | microRNA 548ai | |
Synonyms | TDRD11|Tudor-SN|p100 | - | |
Cytomap | 7q32.1 | 6q16.2 | |
Type of gene | protein-coding | ncRNA | |
Description | staphylococcal nuclease domain-containing protein 1EBNA2 coactivator p100testis tissue sperm-binding protein Li 82Ptudor domain-containing protein 11 | hsa-mir-548ai | |
Modification date | 20180523 | 20180329 | |
UniProtAcc | Q7KZF4 | ||
Ensembl transtripts involved in fusion gene | ENST00000354725, ENST00000467238, | ENST00000579940, | |
Fusion gene scores | * DoF score | 13 X 14 X 7=1274 | 2 X 2 X 1=4 |
# samples | 20 | 2 | |
** MAII score | log2(20/1274*10)=-2.67129337248158 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: SND1 [Title/Abstract] AND MIR548AI [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | CN412384 | SND1 | chr7 | 127723842 | + | MIR548AI | chr14 | 30106010 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000354725 | ENST00000579940 | SND1 | chr7 | 127723842 | + | MIR548AI | chr14 | 30106010 | - |
intron-intron | ENST00000467238 | ENST00000579940 | SND1 | chr7 | 127723842 | + | MIR548AI | chr14 | 30106010 | - |
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FusionProtFeatures for SND1_MIR548AI |
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Hgene | Tgene |
SND1 | MIR548AI |
Functions as a bridging factor between STAT6 and thebasal transcription factor. Plays a role in PIM1 regulation of MYBactivity. Functions as a transcriptional coactivator for theEpstein-Barr virus nuclear antigen 2 (EBNA2).{ECO:0000269|PubMed:7651391}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SND1_MIR548AI |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SND1_MIR548AI |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SND1_MIR548AI |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SND1_MIR548AI |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SND1 | C0004352 | Autistic Disorder | 1 | CTD_human |
Hgene | SND1 | C0024121 | Lung Neoplasms | 1 | CTD_human |