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Fusion gene ID: 35027 |
FusionGeneSummary for SMYD2_PTP4A1 |
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Fusion gene information | Fusion gene name: SMYD2_PTP4A1 | Fusion gene ID: 35027 | Hgene | Tgene | Gene symbol | SMYD2 | PTP4A1 | Gene ID | 56950 | 7803 |
Gene name | SET and MYND domain containing 2 | protein tyrosine phosphatase type IVA, member 1 | |
Synonyms | HSKM-B|KMT3C|ZMYND14 | HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 | |
Cytomap | 1q32.3 | 6q12 | |
Type of gene | protein-coding | protein-coding | |
Description | N-lysine methyltransferase SMYD2SET and MYND domain-containing protein 2histone methyltransferase SMYD2lysine N-methyltransferase 3Czinc finger, MYND domain containing 14 | protein tyrosine phosphatase type IVA 1PVT1/PTP4A1 fusionphosphatase of regenerating liver 1protein tyrosine phosphatase type IVA protein 1protein-tyrosine phosphatase 4a1protein-tyrosine phosphatase of regenerating liver 1 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q9NRG4 | Q93096 | |
Ensembl transtripts involved in fusion gene | ENST00000491455, ENST00000415093, ENST00000366957, | ENST00000370651, ENST00000370650, ENST00000578299, ENST00000473334, | |
Fusion gene scores | * DoF score | 9 X 6 X 7=378 | 4 X 2 X 3=24 |
# samples | 9 | 4 | |
** MAII score | log2(9/378*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SMYD2 [Title/Abstract] AND PTP4A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SMYD2 | GO:0018026 | peptidyl-lysine monomethylation | 17108971|20870719 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-XF-AAMT-01A | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-5UTR | ENST00000491455 | ENST00000370651 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
3UTR-5UTR | ENST00000491455 | ENST00000370650 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
3UTR-5UTR | ENST00000491455 | ENST00000578299 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
3UTR-3UTR | ENST00000491455 | ENST00000473334 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
5CDS-5UTR | ENST00000415093 | ENST00000370651 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
5CDS-5UTR | ENST00000415093 | ENST00000370650 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
5CDS-5UTR | ENST00000415093 | ENST00000578299 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
5CDS-3UTR | ENST00000415093 | ENST00000473334 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
5CDS-5UTR | ENST00000366957 | ENST00000370651 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
5CDS-5UTR | ENST00000366957 | ENST00000370650 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
5CDS-5UTR | ENST00000366957 | ENST00000578299 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
5CDS-3UTR | ENST00000366957 | ENST00000473334 | SMYD2 | chr1 | 214454770 | + | PTP4A1 | chr6 | 64286341 | + |
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FusionProtFeatures for SMYD2_PTP4A1 |
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Hgene | Tgene |
SMYD2 | PTP4A1 |
Protein-lysine N-methyltransferase that methylates bothhistones and non-histone proteins, including p53/TP53 and RB1.Specifically methylates histone H3 'Lys-4' (H3K4me) anddimethylates histone H3 'Lys-36' (H3K36me2). Shows even highermethyltransferase activity on p53/TP53. Monomethylates 'Lys-370'of p53/TP53, leading to decreased DNA-binding activity andsubsequent transcriptional regulation activity of p53/TP53.Monomethylates RB1 at 'Lys-860'. {ECO:0000269|PubMed:17108971,ECO:0000269|PubMed:17805299, ECO:0000269|PubMed:18065756,ECO:0000269|PubMed:20870719, ECO:0000269|PubMed:21782458,ECO:0000269|PubMed:21880715}. | Protein tyrosine phosphatase which stimulatesprogression from G1 into S phase during mitosis. May play a rolein the development and maintenance of differentiating epithelialtissues. Enhances cell proliferation, cell motility and invasiveactivity, and promotes cancer metastasis.{ECO:0000269|PubMed:12235145, ECO:0000269|PubMed:12782572,ECO:0000269|PubMed:14643450}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SMYD2_PTP4A1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SMYD2_PTP4A1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SMYD2 | GSK3B, EPB41L3, CLASP2, AKAP11, CDC37, IGF2BP1, AXIN1, TP53, HSP90AA1, RB1, HIST2H3C, MOV10, NXF1, ESR1, GOLGA4, SNX1, CPSF4, ZFC3H1, TXNDC9, CCSER1, ZNF408, NPPA, CELA1, FOXP3, JPH4, ICK | PTP4A1 | TNFAIP8, PTP4A2, ATF7, ELAVL1, APP, LAMP1, GNL1, CREB3L2, ZNF212, RABGGTB, LRRC39, PDHB, AUP1, ISLR, FNTB, BLMH, CNNM1, CNNM3, CNNM4, FDFT1, NUDT12, CDC25A, PTP4A1, MACROD1, RPS12, POLDIP2, CMSS1, EIF3M, MRTO4, RPS19BP1, SSB, RPS10P5, PA2G4, NUDT16, RPL36AL, GRSF1, GADD45GIP1, ACOT8, MRPS28, NIFK, RPL3L, SND1, MBLAC2, EIF3L, PTPRE |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SMYD2_PTP4A1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SMYD2_PTP4A1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | PTP4A1 | C0001973 | Alcoholic Intoxication, Chronic | 2 | PSYGENET |