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Fusion gene ID: 3494 |
FusionGeneSummary for ATP7B_KLF5 |
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Fusion gene information | Fusion gene name: ATP7B_KLF5 | Fusion gene ID: 3494 | Hgene | Tgene | Gene symbol | ATP7B | KLF5 | Gene ID | 540 | 688 |
Gene name | ATPase copper transporting beta | Kruppel like factor 5 | |
Synonyms | PWD|WC1|WD|WND | BTEB2|CKLF|IKLF | |
Cytomap | 13q14.3 | 13q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | copper-transporting ATPase 2ATPase, Cu(2+)- transporting, beta polypeptideATPase, Cu++ transporting, beta polypeptideWilson disease-associated proteincopper pump 2 | Krueppel-like factor 5(intestinal Kruppel-like factorBTE-binding protein 2GC box binding protein 2Klf5C isoformKruppel-like factor 5 (intestinal)basic transcription element binding protein 2colon krueppel-like factorcolon kruppel-like factorintes | |
Modification date | 20180523 | 20180527 | |
UniProtAcc | P35670 | Q13887 | |
Ensembl transtripts involved in fusion gene | ENST00000242839, ENST00000400366, ENST00000344297, ENST00000400370, ENST00000448424, ENST00000418097, ENST00000417240, ENST00000482841, ENST00000542656, | ENST00000477333, ENST00000539231, ENST00000377687, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 4 X 2 X 3=24 |
# samples | 1 | 4 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: ATP7B [Title/Abstract] AND KLF5 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ATP7B | GO:0006825 | copper ion transport | 26004889 |
Hgene | ATP7B | GO:0015677 | copper ion import | 16472602 |
Hgene | ATP7B | GO:0046688 | response to copper ion | 15269005|16472602|16939419 |
Hgene | ATP7B | GO:0051208 | sequestering of calcium ion | 16472602 |
Tgene | KLF5 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 16595680 |
Tgene | KLF5 | GO:0099156 | cell-cell signaling via exosome | 28408180 |
Tgene | KLF5 | GO:1902895 | positive regulation of pri-miRNA transcription by RNA polymerase II | 28408180 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | ESCA | TCGA-LN-A7HX-01A | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000242839 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000242839 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000242839 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-3UTR | ENST00000400366 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000400366 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000400366 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-3UTR | ENST00000344297 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000344297 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000344297 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-3UTR | ENST00000400370 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000400370 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000400370 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-3UTR | ENST00000448424 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000448424 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000448424 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-3UTR | ENST00000418097 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000418097 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
5CDS-5UTR | ENST00000418097 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-3UTR | ENST00000417240 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-5UTR | ENST00000417240 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-5UTR | ENST00000417240 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-3UTR | ENST00000482841 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-5UTR | ENST00000482841 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-5UTR | ENST00000482841 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-3UTR | ENST00000542656 | ENST00000477333 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-5UTR | ENST00000542656 | ENST00000539231 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
intron-5UTR | ENST00000542656 | ENST00000377687 | ATP7B | chr13 | 52585423 | - | KLF5 | chr13 | 73635999 | + |
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FusionProtFeatures for ATP7B_KLF5 |
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Hgene | Tgene |
ATP7B | KLF5 |
Copper ion transmembrane transporter involved in theexport of copper out of the cells, such as the efflux of hepaticcopper into the bile. {ECO:0000269|PubMed:18203200,ECO:0000269|PubMed:22240481, ECO:0000269|PubMed:24706876,ECO:0000269|PubMed:26004889}. | Transcription factor that binds to GC box promoterelements. Activates the transcription of these genes. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ATP7B_KLF5 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ATP7B_KLF5 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ATP7B | GLRX, ATOX1, DCTN4, ELAVL1, COMMD1, ZBTB16, HP, CLU, NRG1, DNAJB2, MANSC1, CLEC2D, PCDHGB1, ITM2A, TMEM223, NTRK3, GRPR | KLF5 | SET, EP300, NFKB1, PRKCA, CREBBP, GTF2B, TBP, WWP1, ESR1, HDAC1, FBXW7, GSK3B, HDAC2, RARA, TRIM25, ESR2, SMURF2, WWTR1, ELAVL1, YAP1, SMAD2, RRBP1, SMAD4, SMAD3, ZBTB17, CTNNB1, SREBF1, SUMO1, UBE2I, NCOR2, NCOR1, PPARG, ANP32B, PARP1, TP53, GTF2E2, GTF2F2, ATXN3L, XPO1, ACTR5, RXRA, CEBPB, CEBPG, CSRP3, CEBPA, JUN, BAP1, HCFC1, OGT, ACTA2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ATP7B_KLF5 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ATP7B_KLF5 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ATP7B | C0019202 | Hepatolenticular Degeneration | 96 | CTD_human;ORPHANET;UNIPROT |
Hgene | ATP7B | C0019158 | Hepatitis | 2 | CTD_human |
Hgene | ATP7B | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
Hgene | ATP7B | C0015695 | Fatty Liver | 1 | CTD_human |
Hgene | ATP7B | C0021368 | Inflammation | 1 | CTD_human |
Hgene | ATP7B | C0022665 | Kidney Neoplasm | 1 | CTD_human |
Hgene | ATP7B | C0023890 | Liver Cirrhosis | 1 | CTD_human;HPO |
Hgene | ATP7B | C0023895 | Liver diseases | 1 | CTD_human |
Hgene | ATP7B | C0023903 | Liver neoplasms | 1 | CTD_human |
Hgene | ATP7B | C0023904 | Liver Neoplasms, Experimental | 1 | CTD_human |
Hgene | ATP7B | C0026640 | Mouth Neoplasms | 1 | CTD_human |
Hgene | ATP7B | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Hgene | ATP7B | C0041696 | Unipolar Depression | 1 | PSYGENET |
Hgene | ATP7B | C0162557 | Liver Failure, Acute | 1 | CTD_human;HPO |
Hgene | ATP7B | C0242339 | Dyslipidemias | 1 | CTD_human |
Hgene | ATP7B | C0919267 | ovarian neoplasm | 1 | CTD_human |
Hgene | ATP7B | C1168401 | Squamous cell carcinoma of the head and neck | 1 | CTD_human |
Hgene | ATP7B | C1269683 | Major Depressive Disorder | 1 | PSYGENET |
Hgene | ATP7B | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Tgene | KLF5 | C0007137 | Squamous cell carcinoma | 1 | CTD_human |
Tgene | KLF5 | C0030297 | Pancreatic Neoplasm | 1 | CTD_human |
Tgene | KLF5 | C0036341 | Schizophrenia | 1 | PSYGENET |
Tgene | KLF5 | C0152013 | Adenocarcinoma of lung (disorder) | 1 | CTD_human |
Tgene | KLF5 | C2936380 | Neointima | 1 | CTD_human |