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Fusion gene ID: 34682 |
FusionGeneSummary for SLIRP_RAP2C |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SLIRP_RAP2C | Fusion gene ID: 34682 | Hgene | Tgene | Gene symbol | SLIRP | RAP2C | Gene ID | 81892 | 57826 |
| Gene name | SRA stem-loop interacting RNA binding protein | RAP2C, member of RAS oncogene family | |
| Synonyms | C14orf156|DC50|PD04872 | - | |
| Cytomap | 14q24.3 | Xq26.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | SRA stem-loop-interacting RNA-binding protein, mitochondrial | ras-related protein Rap-2csmall GTPase RAP2C | |
| Modification date | 20180523 | 20180522 | |
| UniProtAcc | Q9GZT3 | Q9Y3L5 | |
| Ensembl transtripts involved in fusion gene | ENST00000557342, ENST00000238688, ENST00000557623, ENST00000557431, | ENST00000342983, ENST00000370874, ENST00000460462, | |
| Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 2 X 3 X 1=6 |
| # samples | 2 | 4 | |
| ** MAII score | log2(2/4*10)=2.32192809488736 | log2(4/6*10)=2.73696559416621 | |
| Context | PubMed: SLIRP [Title/Abstract] AND RAP2C [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | DB310659 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-intron | ENST00000557342 | ENST00000342983 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| 5UTR-intron | ENST00000557342 | ENST00000370874 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| 5UTR-intron | ENST00000557342 | ENST00000460462 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| 5UTR-intron | ENST00000238688 | ENST00000342983 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| 5UTR-intron | ENST00000238688 | ENST00000370874 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| 5UTR-intron | ENST00000238688 | ENST00000460462 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| intron-intron | ENST00000557623 | ENST00000342983 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| intron-intron | ENST00000557623 | ENST00000370874 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| intron-intron | ENST00000557623 | ENST00000460462 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| intron-intron | ENST00000557431 | ENST00000342983 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| intron-intron | ENST00000557431 | ENST00000370874 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
| intron-intron | ENST00000557431 | ENST00000460462 | SLIRP | chr14 | 78174450 | - | RAP2C | chrX | 131343035 | + |
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FusionProtFeatures for SLIRP_RAP2C |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SLIRP | RAP2C |
| RNA-binding protein that acts as a nuclear receptorcorepressor. Probably acts by binding the SRA RNA, and repressingthe SRA-mediated nuclear receptor coactivation. Binds the STR7loop of SRA RNA. Also able to repress glucocorticoid (GR),androgen (AR), thyroid (TR) and VDR-mediated transactivation.{ECO:0000269|PubMed:16762838}. | Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. May play a role incytoskeletal rearrangements and regulate cell spreading throughactivation of the effector TNIK. May play a role in SRE-mediatedgene transcription. {ECO:0000269|PubMed:17447155}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SLIRP_RAP2C |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SLIRP_RAP2C |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SLIRP_RAP2C |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLIRP_RAP2C |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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