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Fusion gene ID: 34201 |
FusionGeneSummary for SLC25A21_FOXA1 |
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Fusion gene information | Fusion gene name: SLC25A21_FOXA1 | Fusion gene ID: 34201 | Hgene | Tgene | Gene symbol | SLC25A21 | FOXA1 | Gene ID | 89874 | 3169 |
Gene name | solute carrier family 25 member 21 | forkhead box A1 | |
Synonyms | ODC|ODC1 | HNF3A|TCF3A | |
Cytomap | 14q13.3 | 14q21.1 | |
Type of gene | protein-coding | protein-coding | |
Description | mitochondrial 2-oxodicarboxylate carrieroxodicarboxylate carriersolute carrier family 25 (mitochondrial oxoadipate carrier), member 21solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 | hepatocyte nuclear factor 3-alphaHNF-3-alphaHNF-3ATCF-3Aforkhead box protein A1transcription factor 3A | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9BQT8 | P55317 | |
Ensembl transtripts involved in fusion gene | ENST00000555449, ENST00000331299, ENST00000557611, | ENST00000250448, ENST00000540786, ENST00000545425, | |
Fusion gene scores | * DoF score | 2 X 3 X 3=18 | 5 X 4 X 3=60 |
# samples | 3 | 5 | |
** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SLC25A21 [Title/Abstract] AND FOXA1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. Tissue-specifically expressed gene involved fusion gene, inframe and retained their domain. Transcription factor involved fusion gene, inframe and retained DNA-binding domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | FOXA1 | GO:0032355 | response to estradiol | 16087863 |
Tgene | FOXA1 | GO:0043065 | positive regulation of apoptotic process | 19127412 |
Tgene | FOXA1 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 16331276|19127412|20160041 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-G9-6366-01A | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000555449 | ENST00000250448 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
5CDS-5UTR | ENST00000555449 | ENST00000540786 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
5CDS-5UTR | ENST00000555449 | ENST00000545425 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
In-frame | ENST00000331299 | ENST00000250448 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
5CDS-5UTR | ENST00000331299 | ENST00000540786 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
5CDS-5UTR | ENST00000331299 | ENST00000545425 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
5UTR-3CDS | ENST00000557611 | ENST00000250448 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
5UTR-5UTR | ENST00000557611 | ENST00000540786 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
5UTR-5UTR | ENST00000557611 | ENST00000545425 | SLC25A21 | chr14 | 37344160 | - | FOXA1 | chr14 | 38061915 | - |
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FusionProtFeatures for SLC25A21_FOXA1 |
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Hgene | Tgene |
SLC25A21 | FOXA1 |
Transports C5-C7 oxodicarboxylates across the innermembranes of mitochondria. Can transport 2-oxoadipate, 2-oxoglutarate, adipate, glutarate, and to a lesser extent,pimelate, 2-oxopimelate, 2-aminoadipate, oxaloacetate, andcitrate. | Transcription factor that is involved in embryonicdevelopment, establishment of tissue-specific gene expression andregulation of gene expression in differentiated tissues. Isthought to act as a 'pioneer' factor opening the compactedchromatin for other proteins through interactions with nucleosomalcore histones and thereby replacing linker histones at targetenhancer and/or promoter sites. Binds DNA with the consensussequence 5'-[AC]A[AT]T[AG]TT[GT][AG][CT]T[CT]-3' (By similarity).Proposed to play a role in translating the epigenetic signaturesinto cell type-specific enhancer-driven transcriptional programs.Its differential recruitment to chromatin is dependent ondistribution of histone H3 methylated at 'Lys-5' (H3K4me2) inestrogen-regulated genes. Involved in the development of multipleendoderm-derived organ systems such as liver, pancreas, lung andprostate; FOXA1 and FOXA2 seem to have at least in part redundantroles (By similarity). Modulates the transcriptional activity ofnuclear hormone receptors. Is involved in ESR1-mediatedtranscription; required for ESR1 binding to the NKX2-1 promoter inbreast cancer cells; binds to the RPRM promoter and is requiredfor the estrogen-induced repression of RPRM. Involved inregulation of apoptosis by inhibiting the expression of BCL2.Involved in cell cycle regulation by activating expression ofCDKN1B, alone or in conjunction with BRCA1. Originally describedas a transcription activator for a number of liver genes such asAFP, albumin, tyrosine aminotransferase, PEPCK, etc. Interactswith the cis-acting regulatory regions of these genes. Involved inglucose homeostasis. {ECO:0000250, ECO:0000269|PubMed:16087863,ECO:0000269|PubMed:16331276, ECO:0000269|PubMed:18358809,ECO:0000269|PubMed:19127412, ECO:0000269|PubMed:19917725}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 17_37 | 39 | 300 | Transmembrane | Helical%3B Name%3D1 |
Hgene | SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 17_37 | 39 | 299 | Transmembrane | Helical%3B Name%3D1 |
Tgene | >FOXA1 | chr14:37344160 | chr14:38061915 | ENST00000250448 | - | 0 | 2 | 169_260 | 24 | 473 | DNA binding | Fork-head |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 107_196 | 39 | 300 | Repeat | Note=Solcar 2 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 11_100 | 39 | 300 | Repeat | Note=Solcar 1 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 205_294 | 39 | 300 | Repeat | Note=Solcar 3 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 107_196 | 39 | 299 | Repeat | Note=Solcar 2 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 11_100 | 39 | 299 | Repeat | Note=Solcar 1 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 205_294 | 39 | 299 | Repeat | Note=Solcar 3 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 113_133 | 39 | 300 | Transmembrane | Helical%3B Name%3D3 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 167_187 | 39 | 300 | Transmembrane | Helical%3B Name%3D4 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 205_225 | 39 | 300 | Transmembrane | Helical%3B Name%3D5 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 277_297 | 39 | 300 | Transmembrane | Helical%3B Name%3D6 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000331299 | - | 2 | 10 | 70_89 | 39 | 300 | Transmembrane | Helical%3B Name%3D2 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 113_133 | 39 | 299 | Transmembrane | Helical%3B Name%3D3 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 167_187 | 39 | 299 | Transmembrane | Helical%3B Name%3D4 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 205_225 | 39 | 299 | Transmembrane | Helical%3B Name%3D5 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 277_297 | 39 | 299 | Transmembrane | Helical%3B Name%3D6 |
Hgene | >SLC25A21 | chr14:37344160 | chr14:38061915 | ENST00000555449 | - | 2 | 11 | 70_89 | 39 | 299 | Transmembrane | Helical%3B Name%3D2 |
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FusionGeneSequence for SLC25A21_FOXA1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SLC25A21_ENST00000555449_chr14_37344160_-_FOXA1_ENST00000250448_chr14_38061915_-_488aa MSAKPEVSLVREASRQIVAGGSAGLVEICLMHPLDVVKTRPTPPSRSATXTQAWAPXTPXTPTXPXTPXLRAATXPRRPSTCPMPTRAXG PAXVPAQXPACRGARRAPXTAXLRPAXRPWVRRXARAAWAPWVRSRRPPXMAWAPTRPPXTRAXAPWRTRRPTWAAAARAAAATPRRSSA ATRTPSRPTRTSRSSPWPSSRRPARCSRXARSTSGSWTSSPITGRTSSAGRTPSATRCPSMTASSRWHAPRTSRARAPTGRCTRTPATCS RTAATCAARSASSARSSRGPAAGAGAEAGAAAPRAALRAARTPLAPLTPAPTRPSIGVCTGRPASXRARRPPGPPPAPRLWTTVGRRRQG APRSXRLQPPQLRPPXAPGPGRWPLCPPLTRHTAWHPTSPSCTXKGTPTTPSTTRSPSTTSCPPRSSSISWTSRHTNRHCNTRLTALRCP >In-frame_SLC25A21_ENST00000331299_chr14_37344160_-_FOXA1_ENST00000250448_chr14_38061915_-_488aa MSAKPEVSLVREASRQIVAGGSAGLVEICLMHPLDVVKTRPTPPSRSATXTQAWAPXTPXTPTXPXTPXLRAATXPRRPSTCPMPTRAXG PAXVPAQXPACRGARRAPXTAXLRPAXRPWVRRXARAAWAPWVRSRRPPXMAWAPTRPPXTRAXAPWRTRRPTWAAAARAAAATPRRSSA ATRTPSRPTRTSRSSPWPSSRRPARCSRXARSTSGSWTSSPITGRTSSAGRTPSATRCPSMTASSRWHAPRTSRARAPTGRCTRTPATCS RTAATCAARSASSARSSRGPAAGAGAEAGAAAPRAALRAARTPLAPLTPAPTRPSIGVCTGRPASXRARRPPGPPPAPRLWTTVGRRRQG APRSXRLQPPQLRPPXAPGPGRWPLCPPLTRHTAWHPTSPSCTXKGTPTTPSTTRSPSTTSCPPRSSSISWTSRHTNRHCNTRLTALRCP |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SLC25A21_ENST00000555449_chr14_37344160_-_FOXA1_ENST00000250448_chr14_38061915_-_1466nt ATGTCCGCCAAGCCTGAAGTCAGCTTAGTGCGCGAGGCTTCTCGGCAGATCGTGGCCGGTGGTTCTGCAGGTCTTGTAGAAATTTGCCTG ATGCACCCCCTAGATGTGGTGAAAACCAGGCCTACTCCTCCGTCCCGGTCAGCAACATGAACTCAGGCCTGGGCTCCATGAACTCCATGA ACACCTACATGACCATGAACACCATGACTACGAGCGGCAACATGACCCCGGCGTCCTTCAACATGTCCTATGCCAACCCGGGCCTAGGGG CCGGCCTGAGTCCCGGCGCAGTAGCCGGCATGCCGGGGGGCTCGGCGGGCGCCATGAACAGCATGACTGCGGCCGGCGTGACGGCCATGG GTACGGCGCTGAGCCCGAGCGGCATGGGCGCCATGGGTGCGCAGCAGGCGGCCTCCATGAATGGCCTGGGCCCCTACGCGGCCGCCATGA ACCCGTGCATGAGCCCCATGGCGTACGCGCCGTCCAACCTGGGCCGCAGCCGCGCGGGCGGCGGCGGCGACGCCAAGACGTTCAAGCGCA GCTACCCGCACGCCAAGCCGCCCTACTCGTACATCTCGCTCATCACCATGGCCATCCAGCAGGCGCCCAGCAAGATGCTCACGCTGAGCG AGATCTACCAGTGGATCATGGACCTCTTCCCCTATTACCGGCAGAACCAGCAGCGCTGGCAGAACTCCATCCGCCACTCGCTGTCCTTCA ATGACTGCTTCGTCAAGGTGGCACGCTCCCCGGACAAGCCGGGCAAGGGCTCCTACTGGACGCTGCACCCGGACTCCGGCAACATGTTCG AGAACGGCTGCTACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCA GCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCCTCTGGCGCCTCTAACCCCAGCGCCGACTCGCCCCTCCATCGGGGTGTGCACG GGAAGACCGGCCAGCTAGAGGGCGCGCCGGCCCCCGGGCCCGCCGCCAGCCCCCAGACTCTGGACCACAGTGGGGCGACGGCGACAGGGG GCGCCTCGGAGTTGAAGACTCCAGCCTCCTCAACTGCGCCCCCCATAAGCTCCGGGCCCGGGGCGCTGGCCTCTGTGCCCGCCTCTCACC CGGCACACGGCTTGGCACCCCACGAGTCCCAGCTGCACCTGAAAGGGGACCCCCACTACTCCTTCAACCACCCGTTCTCCATCAACAACC TCATGTCCTCCTCGGAGCAGCAGCATAAGCTGGACTTCAAGGCATACGAACAGGCACTGCAATACTCGCCTTACGGCTCTACGTTGCCCG CCAGCCTGCCTCTAGGCAGCGCCTCGGTGACCACCAGGAGCCCCATCGAGCCCTCAGCCCTGGAGCCGGCGTACTACCAAGGTGTGTATT >In-frame_SLC25A21_ENST00000331299_chr14_37344160_-_FOXA1_ENST00000250448_chr14_38061915_-_1466nt ATGTCCGCCAAGCCTGAAGTCAGCTTAGTGCGCGAGGCTTCTCGGCAGATCGTGGCCGGTGGTTCTGCAGGTCTTGTAGAAATTTGCCTG ATGCACCCCCTAGATGTGGTGAAAACCAGGCCTACTCCTCCGTCCCGGTCAGCAACATGAACTCAGGCCTGGGCTCCATGAACTCCATGA ACACCTACATGACCATGAACACCATGACTACGAGCGGCAACATGACCCCGGCGTCCTTCAACATGTCCTATGCCAACCCGGGCCTAGGGG CCGGCCTGAGTCCCGGCGCAGTAGCCGGCATGCCGGGGGGCTCGGCGGGCGCCATGAACAGCATGACTGCGGCCGGCGTGACGGCCATGG GTACGGCGCTGAGCCCGAGCGGCATGGGCGCCATGGGTGCGCAGCAGGCGGCCTCCATGAATGGCCTGGGCCCCTACGCGGCCGCCATGA ACCCGTGCATGAGCCCCATGGCGTACGCGCCGTCCAACCTGGGCCGCAGCCGCGCGGGCGGCGGCGGCGACGCCAAGACGTTCAAGCGCA GCTACCCGCACGCCAAGCCGCCCTACTCGTACATCTCGCTCATCACCATGGCCATCCAGCAGGCGCCCAGCAAGATGCTCACGCTGAGCG AGATCTACCAGTGGATCATGGACCTCTTCCCCTATTACCGGCAGAACCAGCAGCGCTGGCAGAACTCCATCCGCCACTCGCTGTCCTTCA ATGACTGCTTCGTCAAGGTGGCACGCTCCCCGGACAAGCCGGGCAAGGGCTCCTACTGGACGCTGCACCCGGACTCCGGCAACATGTTCG AGAACGGCTGCTACTTGCGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCA GCGGCGCCAAGGGCGGCCCTGAGAGCCGCAAGGACCCCTCTGGCGCCTCTAACCCCAGCGCCGACTCGCCCCTCCATCGGGGTGTGCACG GGAAGACCGGCCAGCTAGAGGGCGCGCCGGCCCCCGGGCCCGCCGCCAGCCCCCAGACTCTGGACCACAGTGGGGCGACGGCGACAGGGG GCGCCTCGGAGTTGAAGACTCCAGCCTCCTCAACTGCGCCCCCCATAAGCTCCGGGCCCGGGGCGCTGGCCTCTGTGCCCGCCTCTCACC CGGCACACGGCTTGGCACCCCACGAGTCCCAGCTGCACCTGAAAGGGGACCCCCACTACTCCTTCAACCACCCGTTCTCCATCAACAACC TCATGTCCTCCTCGGAGCAGCAGCATAAGCTGGACTTCAAGGCATACGAACAGGCACTGCAATACTCGCCTTACGGCTCTACGTTGCCCG CCAGCCTGCCTCTAGGCAGCGCCTCGGTGACCACCAGGAGCCCCATCGAGCCCTCAGCCCTGGAGCCGGCGTACTACCAAGGTGTGTATT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SLC25A21_ENST00000555449_chr14_37344160_-_FOXA1_ENST00000250448_chr14_38061915_-_2920nt ATCAGTAGGCTGTGCAGGCTGCGAGCTCGTTGACGCATCTCAGCCCACTCCCTTGTCCTCCCGCCTGGCGAAGATGTCCGCCAAGCCTGA AGTCAGCTTAGTGCGCGAGGCTTCTCGGCAGATCGTGGCCGGTGGTTCTGCAGGTCTTGTAGAAATTTGCCTGATGCACCCCCTAGATGT GGTGAAAACCAGGCCTACTCCTCCGTCCCGGTCAGCAACATGAACTCAGGCCTGGGCTCCATGAACTCCATGAACACCTACATGACCATG AACACCATGACTACGAGCGGCAACATGACCCCGGCGTCCTTCAACATGTCCTATGCCAACCCGGGCCTAGGGGCCGGCCTGAGTCCCGGC GCAGTAGCCGGCATGCCGGGGGGCTCGGCGGGCGCCATGAACAGCATGACTGCGGCCGGCGTGACGGCCATGGGTACGGCGCTGAGCCCG AGCGGCATGGGCGCCATGGGTGCGCAGCAGGCGGCCTCCATGAATGGCCTGGGCCCCTACGCGGCCGCCATGAACCCGTGCATGAGCCCC ATGGCGTACGCGCCGTCCAACCTGGGCCGCAGCCGCGCGGGCGGCGGCGGCGACGCCAAGACGTTCAAGCGCAGCTACCCGCACGCCAAG CCGCCCTACTCGTACATCTCGCTCATCACCATGGCCATCCAGCAGGCGCCCAGCAAGATGCTCACGCTGAGCGAGATCTACCAGTGGATC ATGGACCTCTTCCCCTATTACCGGCAGAACCAGCAGCGCTGGCAGAACTCCATCCGCCACTCGCTGTCCTTCAATGACTGCTTCGTCAAG GTGGCACGCTCCCCGGACAAGCCGGGCAAGGGCTCCTACTGGACGCTGCACCCGGACTCCGGCAACATGTTCGAGAACGGCTGCTACTTG CGCCGCCAGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGC CCTGAGAGCCGCAAGGACCCCTCTGGCGCCTCTAACCCCAGCGCCGACTCGCCCCTCCATCGGGGTGTGCACGGGAAGACCGGCCAGCTA GAGGGCGCGCCGGCCCCCGGGCCCGCCGCCAGCCCCCAGACTCTGGACCACAGTGGGGCGACGGCGACAGGGGGCGCCTCGGAGTTGAAG ACTCCAGCCTCCTCAACTGCGCCCCCCATAAGCTCCGGGCCCGGGGCGCTGGCCTCTGTGCCCGCCTCTCACCCGGCACACGGCTTGGCA CCCCACGAGTCCCAGCTGCACCTGAAAGGGGACCCCCACTACTCCTTCAACCACCCGTTCTCCATCAACAACCTCATGTCCTCCTCGGAG CAGCAGCATAAGCTGGACTTCAAGGCATACGAACAGGCACTGCAATACTCGCCTTACGGCTCTACGTTGCCCGCCAGCCTGCCTCTAGGC AGCGCCTCGGTGACCACCAGGAGCCCCATCGAGCCCTCAGCCCTGGAGCCGGCGTACTACCAAGGTGTGTATTCCAGACCCGTCCTAAAC ACTTCCTAGCTCCCGGGACTGGGGGGTTTGTCTGGCATAGCCATGCTGGTAGCAAGAGAGAAAAAATCAACAGCAAACAAAACCACACAA ACCAAACCGTCAACAGCATAATAAAATCCCAACAACTATTTTTATTTCATTTTTCATGCACAACCTTTCCCCCAGTGCAAAAGACTGTTA CTTTATTATTGTATTCAAAATTCATTGTGTATATTACTACAAAGACAACCCCAAACCAATTTTTTTCCTGCGAAGTTTAATGATCCACAA GTGTATATATGAAATTCTCCTCCTTCCTTGCCCCCCTCTCTTTCTTCCCTCTTTCCCCTCCAGACATTCTAGTTTGTGGAGGGTTATTTA AAAAAACAAAAAAGGAAGATGGTCAAGTTTGTAAAATATTTGTTTGTGCTTTTTCCCCCTCCTTACCTGACCCCCTACGAGTTTACAGGT CTGTGGCAATACTCTTAACCATAAGAATTGAAATGGTGAAGAAACAAGTATACACTAGAGGCTCTTAAAAGTATTGAAAGACAATACTGC TGTTATATAGCAAGACATAAACAGATTATAAACATCAGAGCCATTTGCTTCTCAGTTTACATTTCTGATACATGCAGATAGCAGATGTCT TTAAATGAAATACATGTATATTGTGTATGGACTTAATTATGCACATGCTCAGATGTGTAGACATCCTCCGTATATTTACATAACATATAG AGGTAATAGATAGGTGATATACATGATACATTCTCAAGAGTTGCTTGACCGAAAGTTACAAGGACCCCAACCCCTTTGTCCTCTCTACCC ACAGATGGCCCTGGGAATCAATTCCTCAGGAATTGCCCTCAAGAACTCTGCTTCTTGCTTTGCAGAGTGCCATGGTCATGTCATTCTGAG GTCACATAACACATAAAATTAGTTTCTATGAGTGTATACCATTTAAAGAATTTTTTTTTCAGTAAAAGGGAATATTACAATGTTGGAGGA GAGATAAGTTATAGGGAGCTGGATTTCAAAACGTGGTCCAAGATTCAAAAATCCTATTGATAGTGGCCATTTTAATCATTGCCATCGTGT GCTTGTTTCATCCAGTGTTATGCACTTTCCACAGTTGGACATGGTGTTAGTATAGCCAGACGGGTTTCATTATTATTTCTCTTTGCTTTC TCAATGTTAATTTATTGCATGGTTTATTCTTTTTCTTTACAGCTGAAATTGCTTTAAATGATGGTTAAAATTACAAATTAAATTGTTAAT TTTTATCAATGTGATTGTAATTAAAAATATTTTGATTTAAATAACAAAAATAATACCAGATTTTAAGCCGTGGAAAATGTTCTTGATCAT >In-frame_SLC25A21_ENST00000331299_chr14_37344160_-_FOXA1_ENST00000250448_chr14_38061915_-_3363nt TTATAGGACAACTAACTGAGGAATTTATTCACTTGTCCCTTCTTTTGAACCTCACTGTGCTCTGGCTTGCCAGGAGGTGCAAGTGTCGTC CCCGCTTTGTACTTGGCGCTCCAGGCCTGGGTCACTTCACTTGAGTTATCAGAGGCAACCGTCTAGTTTGACAAACTACCGGAGGCTCCT GATAGAGAAGGGCGTGGGCGCCAATCTAGGAGACAAAGCCTGAGCCGCTGCGGTGAGCCAACCCAAACCCATCCGCGGGTCTTCTTTCCA GAGACATTTTCGGAGCCGAGGGCGCCTCTGCGAGAGCGCTGCGAACAGGTTCCGACGCGCCGGAGATCGCGCGACGAATCTGCGCCTCGA ACCCTCGCTTTCCAGCAGTCGCCGGATTGCTGCTCCACAGGGAGCCAACGCGCTTGAGGACCAGCCCAGCCGGGGCTCTCTGGATCAGTA GGCTGTGCAGGCTGCGAGCTCGTTGACGCATCTCAGCCCACTCCCTTGTCCTCCCGCCTGGCGAAGATGTCCGCCAAGCCTGAAGTCAGC TTAGTGCGCGAGGCTTCTCGGCAGATCGTGGCCGGTGGTTCTGCAGGTCTTGTAGAAATTTGCCTGATGCACCCCCTAGATGTGGTGAAA ACCAGGCCTACTCCTCCGTCCCGGTCAGCAACATGAACTCAGGCCTGGGCTCCATGAACTCCATGAACACCTACATGACCATGAACACCA TGACTACGAGCGGCAACATGACCCCGGCGTCCTTCAACATGTCCTATGCCAACCCGGGCCTAGGGGCCGGCCTGAGTCCCGGCGCAGTAG CCGGCATGCCGGGGGGCTCGGCGGGCGCCATGAACAGCATGACTGCGGCCGGCGTGACGGCCATGGGTACGGCGCTGAGCCCGAGCGGCA TGGGCGCCATGGGTGCGCAGCAGGCGGCCTCCATGAATGGCCTGGGCCCCTACGCGGCCGCCATGAACCCGTGCATGAGCCCCATGGCGT ACGCGCCGTCCAACCTGGGCCGCAGCCGCGCGGGCGGCGGCGGCGACGCCAAGACGTTCAAGCGCAGCTACCCGCACGCCAAGCCGCCCT ACTCGTACATCTCGCTCATCACCATGGCCATCCAGCAGGCGCCCAGCAAGATGCTCACGCTGAGCGAGATCTACCAGTGGATCATGGACC TCTTCCCCTATTACCGGCAGAACCAGCAGCGCTGGCAGAACTCCATCCGCCACTCGCTGTCCTTCAATGACTGCTTCGTCAAGGTGGCAC GCTCCCCGGACAAGCCGGGCAAGGGCTCCTACTGGACGCTGCACCCGGACTCCGGCAACATGTTCGAGAACGGCTGCTACTTGCGCCGCC AGAAGCGCTTCAAGTGCGAGAAGCAGCCGGGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGGGGCAGCGGCGCCAAGGGCGGCCCTGAGA GCCGCAAGGACCCCTCTGGCGCCTCTAACCCCAGCGCCGACTCGCCCCTCCATCGGGGTGTGCACGGGAAGACCGGCCAGCTAGAGGGCG CGCCGGCCCCCGGGCCCGCCGCCAGCCCCCAGACTCTGGACCACAGTGGGGCGACGGCGACAGGGGGCGCCTCGGAGTTGAAGACTCCAG CCTCCTCAACTGCGCCCCCCATAAGCTCCGGGCCCGGGGCGCTGGCCTCTGTGCCCGCCTCTCACCCGGCACACGGCTTGGCACCCCACG AGTCCCAGCTGCACCTGAAAGGGGACCCCCACTACTCCTTCAACCACCCGTTCTCCATCAACAACCTCATGTCCTCCTCGGAGCAGCAGC ATAAGCTGGACTTCAAGGCATACGAACAGGCACTGCAATACTCGCCTTACGGCTCTACGTTGCCCGCCAGCCTGCCTCTAGGCAGCGCCT CGGTGACCACCAGGAGCCCCATCGAGCCCTCAGCCCTGGAGCCGGCGTACTACCAAGGTGTGTATTCCAGACCCGTCCTAAACACTTCCT AGCTCCCGGGACTGGGGGGTTTGTCTGGCATAGCCATGCTGGTAGCAAGAGAGAAAAAATCAACAGCAAACAAAACCACACAAACCAAAC CGTCAACAGCATAATAAAATCCCAACAACTATTTTTATTTCATTTTTCATGCACAACCTTTCCCCCAGTGCAAAAGACTGTTACTTTATT ATTGTATTCAAAATTCATTGTGTATATTACTACAAAGACAACCCCAAACCAATTTTTTTCCTGCGAAGTTTAATGATCCACAAGTGTATA TATGAAATTCTCCTCCTTCCTTGCCCCCCTCTCTTTCTTCCCTCTTTCCCCTCCAGACATTCTAGTTTGTGGAGGGTTATTTAAAAAAAC AAAAAAGGAAGATGGTCAAGTTTGTAAAATATTTGTTTGTGCTTTTTCCCCCTCCTTACCTGACCCCCTACGAGTTTACAGGTCTGTGGC AATACTCTTAACCATAAGAATTGAAATGGTGAAGAAACAAGTATACACTAGAGGCTCTTAAAAGTATTGAAAGACAATACTGCTGTTATA TAGCAAGACATAAACAGATTATAAACATCAGAGCCATTTGCTTCTCAGTTTACATTTCTGATACATGCAGATAGCAGATGTCTTTAAATG AAATACATGTATATTGTGTATGGACTTAATTATGCACATGCTCAGATGTGTAGACATCCTCCGTATATTTACATAACATATAGAGGTAAT AGATAGGTGATATACATGATACATTCTCAAGAGTTGCTTGACCGAAAGTTACAAGGACCCCAACCCCTTTGTCCTCTCTACCCACAGATG GCCCTGGGAATCAATTCCTCAGGAATTGCCCTCAAGAACTCTGCTTCTTGCTTTGCAGAGTGCCATGGTCATGTCATTCTGAGGTCACAT AACACATAAAATTAGTTTCTATGAGTGTATACCATTTAAAGAATTTTTTTTTCAGTAAAAGGGAATATTACAATGTTGGAGGAGAGATAA GTTATAGGGAGCTGGATTTCAAAACGTGGTCCAAGATTCAAAAATCCTATTGATAGTGGCCATTTTAATCATTGCCATCGTGTGCTTGTT TCATCCAGTGTTATGCACTTTCCACAGTTGGACATGGTGTTAGTATAGCCAGACGGGTTTCATTATTATTTCTCTTTGCTTTCTCAATGT TAATTTATTGCATGGTTTATTCTTTTTCTTTACAGCTGAAATTGCTTTAAATGATGGTTAAAATTACAAATTAAATTGTTAATTTTTATC AATGTGATTGTAATTAAAAATATTTTGATTTAAATAACAAAAATAATACCAGATTTTAAGCCGTGGAAAATGTTCTTGATCATTTGCAGT |
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FusionGenePPI for SLC25A21_FOXA1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SLC25A21 | FBXO6, TBX20, NOSIP, DNASE1L2, PPIE | FOXA1 | AR, ONECUT1, HDAC7, TLE1, ELAVL1, AHR, SEZ6L2, EED, PIAS1, SATB1, SATB2, NAA40, RECQL, CREB1, HOXB9, NACC1, NFIX, DLX1, DLX5, HOXD13, LDB1, NFIC, NKX2-5, PBX1, UBA7, UBP1, VARS, H2AFY, RCC1, MGME1, RPA2, ALX4, FOXA3, MSH3, PLOD2, HMGA1, KBTBD7, LDB2, TFAP4, PLOD1, KMT2C, NUP153, KRT13, DDX24, UTP20, UBTF, NOL6, RBM19, DDX47, ADAR, UTP18, WDR75, HNRNPH2, UTP14A, DDX56, DDX52, MPHOSPH10, NOL10, TBL3, DDX31, SKIV2L2, GLTSCR2, ESF1, RACGAP1, SSRP1, DDX50, H2AFX, NOP16, GPATCH4, LOC102724159, NSUN2, NOL8, RPL5, ALYREF, KIF23, XRN2, URB2, NOL11, DDX51, EXOSC10, KDM6A, DNTTIP2, POP1, NIP7, RBM34, TARDBP, RRP15, KRI1, REXO4, NOM1, NKRF, SDAD1, IGLC7, NOC4L, PAK1IP1, WDR12, AATF, DEK, CCDC137, RRP9, RCOR3, ODF2, EIF5A, PWP1, LUC7L2, PARN, C9orf114, DSG2, LOC113230, TOP2A, PHF2, CCDC59, YWHAB, DIMT1, UTP11L, DHX37, RRP36, WDR46, PPP1CC, LUC7L, HIST1H3A, DNAJC9, RPLP0, ISG20L2, DDX49, C11orf98, NR2F2, TMPO, RNH1, GAR1, NOL7, RPL13A, NGDN, USP36, GATA3, NSUN5, C14orf169, C3orf17, RALY, IGHG2, MCM7, PNO1, SRSF6, CIRBP, MCM3, PAXIP1, FUBP3, RPL28, WDR5, GRHL2, RPS27, UHRF1, RSL24D1, RPS17, ESR1, DNMT1, EXOSC2, ABT1, RPL10, NME1, ARL6IP4, SF1, GTF2I, DIEXF, CD3EAP, TSR1, RPS19BP1, DHX33, RAB10, PRSS1, HDGF, NOP10, TRIM33, SRSF9, PRDX2, HNRNPUL2, TUBGCP6, YLPM1, EIF1AY, SNRPGP15, DAZAP1, IGKV3-20, C12orf43, MAGOH, ARF3, CPSF7, ASH2L, DSTN, CMSS1, NOSIP, EZR, RBM4, ALKBH5, SEC14L5, SUMO1, L1RE1, PARP2, RPF1, POLR1E, TPT1, C6orf211, TRPS1, RPS5, EXOSC6, EXOSC9, DPY30, SRSF12, EXOSC4, RPL32, SAFB, FIP1L1, CSNK1A1, TXNDC17, GPI, TRA2A, NCOA3, ACTR3C, PINX1, FAM207A, RPL30, DDX42, ARF6, PRPF3, FCF1, SNRPA1, MCTS1, LAS1L, PHF6, DDX55, WBSCR22, POLR1C, STAU1, NCOA6, XPO1, SF3B4, HBD, TSPYL1, EXOSC3, CDK1, CORO7, TLE3, VPS35, AGR2, CCT6A, VRK1, HBA1, CBX5, PSIP1, CHD4, RBMX2, APRT, EXOSC1, MROH8, PRPF6, DNAJB1, LGALS3, CCDC67, ZFP42, RBM25, CHD3, ARPC2, XPO5, DNAH7, TEX10, DNAJA1, GMPS, SEPT11, OSTF1, FAM50A, CSE1L, RRP7A, MARS, GSTM3, PRMT6, PSMD2, ZYX, VWA8, RBM17, ZFP91, RBBP4, KPNA4, AGBL1, B4GAT1, KAT7, HNRNPUL1, MPHOSPH6, COPG1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SLC25A21_FOXA1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLC25A21_FOXA1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | FOXA1 | C0033578 | Prostatic Neoplasms | 2 | CTD_human |
Tgene | FOXA1 | C0015695 | Fatty Liver | 1 | CTD_human |
Tgene | FOXA1 | C1458155 | Mammary Neoplasms | 1 | CTD_human |