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Fusion gene ID: 34016 |
FusionGeneSummary for SLC10A7_TTC29 |
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Fusion gene information | Fusion gene name: SLC10A7_TTC29 | Fusion gene ID: 34016 | Hgene | Tgene | Gene symbol | SLC10A7 | TTC29 | Gene ID | 84068 | 83894 |
Gene name | solute carrier family 10 member 7 | tetratricopeptide repeat domain 29 | |
Synonyms | C4orf13|P7 | NYD-SP14|TBPP2A | |
Cytomap | 4q31.22 | 4q31.22 | |
Type of gene | protein-coding | protein-coding | |
Description | sodium/bile acid cotransporter 7Na(+)/bile acid cotransporter 7SBF-domain containing proteinsolute carrier family 10 (sodium/bile acid cotransporter family), member 7 | tetratricopeptide repeat protein 29TPR repeat protein 29testicular secretory protein Li 62testis development protein NYD-SP14 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q0GE19 | Q8NA56 | |
Ensembl transtripts involved in fusion gene | ENST00000432059, ENST00000335472, ENST00000264986, ENST00000507030, ENST00000394062, ENST00000394059, ENST00000511315, ENST00000511374, ENST00000502607, | ENST00000513335, ENST00000398886, ENST00000325106, ENST00000506019, | |
Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 3 X 2 X 2=12 |
# samples | 3 | 3 | |
** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SLC10A7 [Title/Abstract] AND TTC29 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | OV | TCGA-13-0760-01A | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000432059 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000432059 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000432059 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5CDS-intron | ENST00000432059 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000335472 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000335472 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000335472 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5CDS-intron | ENST00000335472 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000264986 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000264986 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000264986 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5CDS-intron | ENST00000264986 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000507030 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000507030 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000507030 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5CDS-intron | ENST00000507030 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000394062 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000394062 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000394062 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5CDS-intron | ENST00000394062 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000394059 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000394059 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000394059 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5CDS-intron | ENST00000394059 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5UTR-3CDS | ENST00000511315 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5UTR-3CDS | ENST00000511315 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5UTR-3CDS | ENST00000511315 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5UTR-intron | ENST00000511315 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000511374 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000511374 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000511374 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5CDS-intron | ENST00000511374 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000502607 | ENST00000513335 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000502607 | ENST00000398886 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
Frame-shift | ENST00000502607 | ENST00000325106 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
5CDS-intron | ENST00000502607 | ENST00000506019 | SLC10A7 | chr4 | 147438190 | - | TTC29 | chr4 | 147628703 | - |
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FusionProtFeatures for SLC10A7_TTC29 |
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Hgene | Tgene |
SLC10A7 | TTC29 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SLC10A7_TTC29 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SLC10A7_TTC29 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SLC10A7 | ISLR, DPY19L4, ATP6V0D1, CD79A, MME, PCDHA4, IQCF1, EIF2B2, TOR1AIP2, KIAA0368, APOB | TTC29 | ABCE1, LSG1, EIF5B, DHX16, ANKFY1, OBSL1, SUPT6H, CDK18, FBXW8, TBL1XR1, IKBIP, MACF1, CSTF2, NELFE, TAF8, PPIL4 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SLC10A7_TTC29 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLC10A7_TTC29 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SLC10A7 | C0008370 | Cholestasis | 1 | CTD_human |
Hgene | SLC10A7 | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |