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Fusion gene ID: 3371 |
FusionGeneSummary for ATP2C1_SYT17 |
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Fusion gene information | Fusion gene name: ATP2C1_SYT17 | Fusion gene ID: 3371 | Hgene | Tgene | Gene symbol | ATP2C1 | SYT17 | Gene ID | 27032 | 51760 |
Gene name | ATPase secretory pathway Ca2+ transporting 1 | synaptotagmin 17 | |
Synonyms | ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 | sytXVII | |
Cytomap | 3q22.1 | 16p12.3 | |
Type of gene | protein-coding | protein-coding | |
Description | calcium-transporting ATPase type 2C member 1ATP-dependent Ca(2+) pump PMR1ATPase 2C1ATPase, Ca(2+)-sequesteringATPase, Ca++ transporting, type 2C, member 1HUSSY-28secretory pathway Ca2+/Mn2+ ATPase 1 | synaptotagmin-17B/K proteinsynaptotagmin XVII | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P98194 | Q9BSW7 | |
Ensembl transtripts involved in fusion gene | ENST00000505330, ENST00000504381, ENST00000507488, ENST00000393221, ENST00000533801, ENST00000510168, ENST00000508532, ENST00000504948, ENST00000513801, ENST00000328560, ENST00000428331, ENST00000359644, ENST00000422190, ENST00000509150, | ENST00000355377, ENST00000562034, ENST00000562711, ENST00000568433, ENST00000568115, | |
Fusion gene scores | * DoF score | 10 X 10 X 6=600 | 3 X 3 X 2=18 |
# samples | 10 | 3 | |
** MAII score | log2(10/600*10)=-2.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: ATP2C1 [Title/Abstract] AND SYT17 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ATP2C1 | GO:0006816 | calcium ion transport | 12810057 |
Hgene | ATP2C1 | GO:0006874 | cellular calcium ion homeostasis | 12810057 |
Tgene | SYT17 | GO:1903861 | positive regulation of dendrite extension | 23999003 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BE792646 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000505330 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000505330 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000505330 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000505330 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000505330 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000504381 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000504381 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000504381 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000504381 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000504381 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000507488 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000507488 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000507488 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000507488 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000507488 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000393221 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000393221 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000393221 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000393221 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000393221 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000533801 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000533801 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000533801 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000533801 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000533801 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-3CDS | ENST00000510168 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000510168 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000510168 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-intron | ENST00000510168 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000510168 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-3CDS | ENST00000508532 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000508532 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000508532 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-intron | ENST00000508532 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000508532 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-3CDS | ENST00000504948 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000504948 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000504948 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-intron | ENST00000504948 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000504948 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-3CDS | ENST00000513801 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000513801 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000513801 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-intron | ENST00000513801 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
5UTR-5UTR | ENST00000513801 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000328560 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000328560 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000328560 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000328560 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000328560 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000428331 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000428331 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000428331 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000428331 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000428331 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000359644 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000359644 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000359644 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000359644 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000359644 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000422190 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000422190 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000422190 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000422190 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000422190 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-3CDS | ENST00000509150 | ENST00000355377 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000509150 | ENST00000562034 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000509150 | ENST00000562711 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-intron | ENST00000509150 | ENST00000568433 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
intron-5UTR | ENST00000509150 | ENST00000568115 | ATP2C1 | chr3 | 130613182 | + | SYT17 | chr16 | 19191712 | + |
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FusionProtFeatures for ATP2C1_SYT17 |
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Hgene | Tgene |
ATP2C1 | SYT17 |
Plays a role in dendrite formation by melanocytes(PubMed:23999003). {ECO:0000269|PubMed:23999003}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for ATP2C1_SYT17 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for ATP2C1_SYT17 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ATP2C1 | ELAVL1, RNF2, HLA-DPA1, TMEM231, OGFOD3, TMEFF1, VSIG4, NTRK1, TMEM17, RAB5C, GOLT1B, FAF2, TMEM165, GTF2IRD1 | SYT17 | CCDC85B, CHMP4A, NINL, TSC22D4, APTX, APP, MEOX1, MEOX2, TRAF2, IKZF1, RUNDC3A, MID2, NIF3L1, GMCL1, CEP63, CEP70, SSX2IP, FAM9B, TF, EGFR |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ATP2C1_SYT17 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | ATP2C1 | P98194 | DB01189 | Desflurane | Calcium-transporting ATPase type 2C member 1 | small molecule | approved |
Hgene | ATP2C1 | P98194 | DB00228 | Enflurane | Calcium-transporting ATPase type 2C member 1 | small molecule | approved|investigational|vet_approved |
Hgene | ATP2C1 | P98194 | DB01028 | Methoxyflurane | Calcium-transporting ATPase type 2C member 1 | small molecule | approved|investigational|vet_approved |
Hgene | ATP2C1 | P98194 | DB01373 | Calcium | Calcium-transporting ATPase type 2C member 1 | small molecule | approved|nutraceutical |
Hgene | ATP2C1 | P98194 | DB00753 | Isoflurane | Calcium-transporting ATPase type 2C member 1 | small molecule | approved|vet_approved |
Hgene | ATP2C1 | P98194 | DB01159 | Halothane | Calcium-transporting ATPase type 2C member 1 | small molecule | approved|vet_approved |
Hgene | ATP2C1 | P98194 | DB01236 | Sevoflurane | Calcium-transporting ATPase type 2C member 1 | small molecule | approved|vet_approved |
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RelatedDiseases for ATP2C1_SYT17 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ATP2C1 | C0085106 | Familial benign pemphigus | 7 | CTD_human;ORPHANET;UNIPROT |