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Fusion gene ID: 33658 |
FusionGeneSummary for SH3GL1_ZIC1 |
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Fusion gene information | Fusion gene name: SH3GL1_ZIC1 | Fusion gene ID: 33658 | Hgene | Tgene | Gene symbol | SH3GL1 | ZIC1 | Gene ID | 6455 | 7545 |
Gene name | SH3 domain containing GRB2 like 1, endophilin A2 | Zic family member 1 | |
Synonyms | CNSA1|EEN|SH3D2B|SH3P8 | CRS6|ZIC|ZNF201 | |
Cytomap | 19p13.3 | 3q24 | |
Type of gene | protein-coding | protein-coding | |
Description | endophilin-A2EEN fusion partner of MLLSH3 domain protein 2BSH3 domain-containing GRB2-like protein 1SH3-containing Grb-2-like 1 proteinSH3-domain GRB2-like 1endophilin-2extra 11-19 leukemia fusionextra eleven-nineteen leukemia fusion gene protein | zinc finger protein ZIC 1Zic family member 1 (odd-paired homolog, Drosophila)Zinc finger protein of the cerebellum 1zinc finger protein 201 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q99961 | Q15915 | |
Ensembl transtripts involved in fusion gene | ENST00000269886, ENST00000598564, ENST00000417295, | ENST00000474034, ENST00000282928, | |
Fusion gene scores | * DoF score | 12 X 5 X 10=600 | 3 X 3 X 3=27 |
# samples | 12 | 3 | |
** MAII score | log2(12/600*10)=-2.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SH3GL1 [Title/Abstract] AND ZIC1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | ZIC1 | GO:0007420 | brain development | 8542595 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SARC | TCGA-KD-A5QS-01A | SH3GL1 | chr19 | 4400321 | - | ZIC1 | chr3 | 147130305 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000269886 | ENST00000474034 | SH3GL1 | chr19 | 4400321 | - | ZIC1 | chr3 | 147130305 | + |
5CDS-intron | ENST00000269886 | ENST00000282928 | SH3GL1 | chr19 | 4400321 | - | ZIC1 | chr3 | 147130305 | + |
5CDS-intron | ENST00000598564 | ENST00000474034 | SH3GL1 | chr19 | 4400321 | - | ZIC1 | chr3 | 147130305 | + |
5CDS-intron | ENST00000598564 | ENST00000282928 | SH3GL1 | chr19 | 4400321 | - | ZIC1 | chr3 | 147130305 | + |
5CDS-intron | ENST00000417295 | ENST00000474034 | SH3GL1 | chr19 | 4400321 | - | ZIC1 | chr3 | 147130305 | + |
5CDS-intron | ENST00000417295 | ENST00000282928 | SH3GL1 | chr19 | 4400321 | - | ZIC1 | chr3 | 147130305 | + |
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FusionProtFeatures for SH3GL1_ZIC1 |
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Hgene | Tgene |
SH3GL1 | ZIC1 |
Implicated in endocytosis. May recruit other proteins tomembranes with high curvature (By similarity). {ECO:0000250}. | Acts as a transcriptional activator. Involved inneurogenesis. Plays important roles in the early stage oforganogenesis of the CNS, as well as during dorsal spinal corddevelopment and maturation of the cerebellum. Involved in thespatial distribution of mossy fiber (MF) neurons within thepontine gray nucleus (PGN). Plays a role in the regulation of MFaxon pathway choice. Promotes MF migration towards ipsilaterally-located cerebellar territories. May have a role in shear flowmechanotransduction in osteocytes. Retains nuclear GLI1 and GLI3in the cytoplasm. Binds to the minimal GLI-consensus sequence 5'-TGGGTGGTC-3' (By similarity). {ECO:0000250|UniProtKB:P46684}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SH3GL1_ZIC1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SH3GL1_ZIC1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SH3GL1 | SH3GL1, SH2D4A, DPPA4, SH3GL3, DNM1, CREBBP, PRMT1, KHDRBS1, YWHAZ, DPYSL4, SEPT8, SH3GL2, PTPRO, VIM, ITSN2, PDCD6IP, SYNJ1, LRRK2, PML, B3GAT1, AARSD1, ACTR3, ARPC2, FUBP1, RPA1, ACTR2, ANP32B, ARPC1A, ARPC4, ARPC5, ARPC5L, BAG1, CALR, CALU, CRTAP, GTF2E1, GTF2F2, KIAA1279, LAP3, NIF3L1, NSUN2, PFDN1, PFDN5, PRKACA, TRMT10A, SH3GLB2, THG1L, TP53RK, TPRKB, TTC1, SH3GLB1, DNM1L, MTA1, GPKOW, VPS37C, MAL2, FAM102A, AZU1, CCDC101, ARHGAP8, AURKA, EWSR1, NF2, POU5F1, CALM1, CDH1, TPTE2, C8G, GPX7, IMPDH1, FBXO32 | ZIC1 | GLI1, GLI2, GLI3, SDR9C7, PLBD1, GDPD3, CTSH, S100A7, SERPINB4, CAPNS2, CPA4, PLA2G4E, RNASE7, SERPINA3, SERPINB3, CTSV, SERPINB1, CASP14, ALOX12B, TGM1, S100P, KLK7, GM2A, AZGP1, LCN2, ACPP, ECM1, HAL, IVL, GSDMA, ARG1, NCCRP1, ASAH1, IMPA2, S100A16, APOD, KPRP, SERPINB13, S100A14, S100A9, CSTA, CAPN1, ALOXE3, GAPDH |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SH3GL1_ZIC1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SH3GL1_ZIC1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ZIC1 | C4225269 | CRANIOSYNOSTOSIS 6 | 1 | UNIPROT |