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Fusion gene ID: 33462 |
FusionGeneSummary for SF3B3_CDH15 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: SF3B3_CDH15 | Fusion gene ID: 33462 | Hgene | Tgene | Gene symbol | SF3B3 | CDH15 | Gene ID | 23450 | 1013 |
| Gene name | splicing factor 3b subunit 3 | cadherin 15 | |
| Synonyms | RSE1|SAP130|SF3b130|STAF130 | CDH14|CDH3|CDHM|MCAD|MRD3 | |
| Cytomap | 16q22.1 | 16q24.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | splicing factor 3B subunit 3SAP 130pre-mRNA splicing factor SF3b, 130 kDa subunitspliceosome-associated protein 130 | cadherin-15cadherin 15, type 1, M-cadherin (myotubule)cadherin-14cadherin-3muscle-cadherin | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q15393 | P55291 | |
| Ensembl transtripts involved in fusion gene | ENST00000302516, | ENST00000289746, ENST00000521087, | |
| Fusion gene scores | * DoF score | 10 X 10 X 7=700 | 2 X 2 X 2=8 |
| # samples | 12 | 2 | |
| ** MAII score | log2(12/700*10)=-2.54432051622381 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: SF3B3 [Title/Abstract] AND CDH15 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | SF3B3 | GO:0000398 | mRNA splicing, via spliceosome | 28781166 |
| Hgene | SF3B3 | GO:0042177 | negative regulation of protein catabolic process | 23951410 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-44-7667-01A | SF3B3 | chr16 | 70578436 | + | CDH15 | chr16 | 89245824 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000302516 | ENST00000289746 | SF3B3 | chr16 | 70578436 | + | CDH15 | chr16 | 89245824 | + |
| 5CDS-3UTR | ENST00000302516 | ENST00000521087 | SF3B3 | chr16 | 70578436 | + | CDH15 | chr16 | 89245824 | + |
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FusionProtFeatures for SF3B3_CDH15 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| SF3B3 | CDH15 |
| Involved in pre-mRNA splicing as a component of thesplicing factor SF3B complex, a constituent of the spliceosome(PubMed:10490618, PubMed:10882114, PubMed:27720643,PubMed:28781166). SF3B complex is required for 'A' complexassembly formed by the stable binding of U2 snRNP to thebranchpoint sequence (BPS) in pre-mRNA. Sequence independentbinding of SF3A/SF3B complex upstream of the branch site isessential, it may anchor U2 snRNP to the pre-mRNA(PubMed:12234937). May also be involved in the assembly of the 'E'complex (PubMed:10882114). Belongs also to the minor U12-dependentspliceosome, which is involved in the splicing of rare class ofnuclear pre-mRNA intron (PubMed:15146077).{ECO:0000269|PubMed:10490618, ECO:0000269|PubMed:10882114,ECO:0000269|PubMed:12234937, ECO:0000269|PubMed:15146077,ECO:0000269|PubMed:27720643, ECO:0000269|PubMed:28781166}. | Cadherins are calcium-dependent cell adhesion proteins.They preferentially interact with themselves in a homophilicmanner in connecting cells; cadherins may thus contribute to thesorting of heterogeneous cell types. M-cadherin is part of themyogenic program and may provide a trigger for terminal muscledifferentiation. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >CDH15 | chr16:70578436 | chr16:89245824 | ENST00000289746 | + | 0 | 14 | 153_260 | 14 | 815 | Domain | Cadherin 2 |
| Tgene | >CDH15 | chr16:70578436 | chr16:89245824 | ENST00000289746 | + | 0 | 14 | 261_375 | 14 | 815 | Domain | Cadherin 3 |
| Tgene | >CDH15 | chr16:70578436 | chr16:89245824 | ENST00000289746 | + | 0 | 14 | 376_481 | 14 | 815 | Domain | Cadherin 4 |
| Tgene | >CDH15 | chr16:70578436 | chr16:89245824 | ENST00000289746 | + | 0 | 14 | 482_590 | 14 | 815 | Domain | Cadherin 5 |
| Tgene | >CDH15 | chr16:70578436 | chr16:89245824 | ENST00000289746 | + | 0 | 14 | 61_152 | 14 | 815 | Domain | Cadherin 1 |
| Tgene | >CDH15 | chr16:70578436 | chr16:89245824 | ENST00000289746 | + | 0 | 14 | 61_606 | 14 | 815 | Topological domain | Extracellular |
| Tgene | >CDH15 | chr16:70578436 | chr16:89245824 | ENST00000289746 | + | 0 | 14 | 627_814 | 14 | 815 | Topological domain | Cytoplasmic |
| Tgene | >CDH15 | chr16:70578436 | chr16:89245824 | ENST00000289746 | + | 0 | 14 | 607_626 | 14 | 815 | Transmembrane | Helical |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SF3B3_CDH15 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_SF3B3_ENST00000302516_chr16_70578436_+_CDH15_ENST00000289746_chr16_89245824_+_1244aa MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVIL EYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCP IPRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLESLCLSLG VPGWRRPTTLYPWRRAPALSRVRRAWVIPPISVSENHKRLPYPLVQIKSDKQQLGSVIYSIQGPGVDEEPRGVFSIDKFTGKVFLNAMLD REKTDRFRLRAFALDLGGSTLEDPTDLEIVVVDQNDNRPAFLQEAFTGRVLEGAVPGTYVTRAEATDADDPETDNAALRFSILQQGSPEL FSIDELTGEIRTVQVGLDREVVAVYNLTLQVADMSGDGLTATASAIITLDDINDNAPEFTRDEFFMEAIEAVSGVDVGRLEVEDRDLPGS PNWVARFTILEGDPDGQFTIRTDPKTNEGVLSIVKALDYESCEHYELKVSVQNEAPLQAAALRAERGQAKVRVHVQDTNEPPVFQENPLR TSLAEGAPPGTLVATFSARDPDTEQLQRLSYSKDYDPEDWLQVDAATGRIQTQHVLSPASPFLKGGWYRAIVLAQDDASQPRTATGTLSI EILEVNDHAPVLAPPPPGSLCSEPHQGPGLLLGATDEDLPPHGAPFHFQLSPRLPELGRNWSLSQVNVSHARLRPRHQVPEGLHRLSLLL RDSGQPPQQREQPLNVTVCRCGKDGVCLPGAAALLAGGTGLSLGALVIVLASALLLLVLVLLVALRARFWKQSRGKGLLHGPQDDLRDNV LNYDEQGGGEEDQDAYDISQLRHPTALSLPLGPPPLRRDAPQGRLHPQPPRVLPTSPLDIADFINDGLEAADSDPSVPPYDTALIYDYEG |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_SF3B3_ENST00000302516_chr16_70578436_+_CDH15_ENST00000289746_chr16_89245824_+_3732nt ATGTTTCTGTACAACTTAACCTTGCAGAGAGCCACTGGCATCAGCTTTGCCATTCATGGAAACTTTTCTGGAACCAAACAACAAGAAATT GTTGTTTCCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAACACTGGCAAAGTACATACCCTACTCACTGTGGAAGTATTCGGT GTTATCCGGTCACTCATGGCCTTTAGGCTGACAGGTGGCACCAAAGACTACATTGTAGTTGGCAGTGACTCTGGTCGAATTGTTATTTTG GAATACCAGCCATCTAAGAATATGTTTGAGAAGATTCACCAAGAAACCTTTGGCAAGAGTGGATGCCGTCGCATCGTTCCTGGCCAGTTC TTAGCTGTGGATCCCAAAGGGCGAGCCGTTATGATTAGTGCCATTGAGAAACAGAAATTGGTGTATATTTTGAACAGAGATGCTGCAGCC CGACTTACCATTTCATCTCCCCTGGAAGCCCACAAAGCAAACACTTTAGTGTATCATGTAGTTGGAGTAGATGTCGGATTTGAAAATCCA ATGTTTGCTTGTCTGGAAATGGATTATGAGGAAGCAGACAATGATCCAACAGGGGAAGCAGCAGCTAATACCCAGCAGACACTTACTTTC TATGAGCTAGACCTTGGTTTAAATCATGTGGTCCGAAAATACAGTGAACCTTTGGAGGAACACGGCAACTTCCTTATTACAGTTCCAGGA GGGTCAGATGGTCCAAGTGGAGTACTGATCTGCTCTGAAAACTATATTACTTACAAGAACTTTGGTGACCAGCCAGATATCCGCTGTCCA ATTCCCAGGAGGCGGAATGACCTGGATGACCCTGAAAGAGGAATGATTTTTGTCTGCTCTGCAACCCATAAAACCAAATCGATGTTCTTC TTTTTGGCTCAAACTGAGCAGGGAGATATCTTTAAGATCACTTTGGAGACAGATGAAGATATGGTTACTGAGATCCGGCTCAAATATTTT GATACTGTACCCGTTGCTGCTGCCATGTGTGTGCTTAAAACAGGGTTCCTTTTTGTAGCATCAGAATTTGGAAACCATTACTTATATCAA ATTGCACATCTTGGAGATGATGATGAAGAACCTGAGTTTTCATCAGCCATGCCTCTGGAAGAAGGAGACACATTCTTTTTTCAGCCAAGA CCACTTAAAAACCTTGTGCTGGTTGATGAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGATAGCTGATCTGGCCAATGAAGATACT CCACAGTTGTATGTGGCCTGTGGTAGGGGACCCCGATCATCTCTGAGAGTCCTAAGACATGGACTTGAGAGCCTCTGCCTGTCTTTGGGG GTTCCTGGATGGAGGAGGCCCACCACCCTGTACCCCTGGCGCCGGGCGCCTGCCCTGAGCCGCGTGCGGAGGGCCTGGGTCATCCCCCCG ATCAGCGTATCCGAGAACCACAAGCGTCTCCCCTACCCCCTGGTTCAGATCAAGTCGGACAAGCAGCAGCTGGGCAGCGTCATCTACAGC ATCCAGGGACCCGGCGTGGATGAGGAGCCCCGGGGCGTCTTCTCTATCGACAAGTTCACAGGGAAGGTCTTCCTCAATGCCATGCTGGAC CGCGAGAAGACTGATCGCTTCAGGCTAAGAGCGTTTGCCCTGGACCTGGGAGGATCCACCCTGGAGGACCCCACGGACCTGGAGATTGTA GTTGTGGATCAGAATGACAACCGGCCAGCCTTCCTGCAGGAGGCGTTCACTGGCCGCGTGCTGGAGGGTGCAGTCCCAGGCACCTATGTG ACCAGGGCAGAGGCCACAGATGCCGACGACCCCGAGACGGACAACGCAGCGCTGCGGTTCTCCATCCTGCAGCAGGGCAGCCCCGAGCTC TTCAGCATCGACGAGCTCACAGGAGAGATCCGCACAGTGCAAGTGGGGCTGGACCGCGAGGTGGTCGCGGTGTACAATCTGACCCTGCAG GTGGCGGACATGTCTGGAGACGGCCTCACAGCCACTGCCTCAGCCATCATCACCCTTGATGACATCAATGACAATGCCCCCGAGTTCACC AGGGATGAGTTCTTCATGGAGGCCATAGAGGCCGTCAGCGGAGTGGATGTGGGACGCCTGGAAGTGGAGGACAGGGACCTGCCAGGCTCC CCAAACTGGGTGGCCAGGTTCACCATCCTGGAAGGCGACCCCGATGGGCAGTTCACCATCCGCACGGACCCCAAGACCAACGAGGGTGTT CTGTCCATTGTGAAGGCCCTGGACTATGAGAGCTGTGAACACTACGAACTCAAAGTGTCGGTGCAGAATGAGGCCCCGCTGCAGGCGGCT GCCCTTAGGGCTGAGCGGGGCCAGGCCAAGGTCCGCGTGCATGTGCAGGACACCAACGAGCCCCCCGTGTTCCAGGAGAACCCACTTCGG ACCAGCCTAGCAGAGGGGGCACCCCCAGGCACTCTGGTGGCCACCTTCTCTGCCCGGGACCCTGACACAGAGCAGCTGCAGAGGCTCAGC TACTCCAAGGACTACGACCCGGAAGACTGGCTGCAAGTGGACGCAGCCACTGGCCGGATCCAGACCCAGCACGTGCTCAGCCCGGCGTCC CCCTTCCTCAAGGGCGGCTGGTACAGAGCCATCGTCCTGGCCCAGGATGACGCCTCCCAGCCCCGCACCGCCACCGGCACCCTGTCCATC GAGATCCTGGAGGTGAACGACCATGCACCTGTGCTGGCCCCGCCGCCGCCGGGCAGCCTGTGCAGCGAGCCACACCAAGGCCCAGGCCTC CTCCTGGGCGCCACGGATGAGGACCTGCCCCCCCACGGGGCCCCCTTCCACTTCCAGCTGAGCCCCAGGCTCCCAGAGCTCGGCCGGAAC TGGAGCCTCAGCCAGGTCAACGTGAGCCACGCGCGCCTGCGGCCGCGACACCAGGTCCCCGAAGGCCTGCACCGCCTCAGCCTGCTGCTC CGGGACTCGGGGCAGCCGCCCCAGCAGCGCGAGCAGCCTCTGAACGTGACCGTGTGCCGCTGCGGCAAGGACGGCGTCTGCCTGCCGGGG GCCGCAGCGCTGCTGGCGGGGGGCACAGGCCTCAGCCTGGGCGCACTGGTCATCGTGCTGGCCAGCGCCCTCCTGCTGCTGGTGCTGGTC CTGCTCGTGGCACTCCGGGCGCGGTTCTGGAAGCAGTCTCGGGGCAAGGGGCTGCTGCACGGCCCCCAGGACGACCTTCGAGACAATGTC CTCAACTACGATGAGCAAGGAGGCGGGGAGGAGGACCAGGACGCCTACGACATCAGCCAGCTGCGTCACCCGACAGCGCTGAGCCTGCCT CTGGGACCGCCGCCACTTCGCAGAGATGCCCCGCAGGGCCGCCTGCACCCCCAGCCACCCCGAGTGCTGCCCACCAGCCCCCTGGACATC GCCGACTTCATCAATGATGGCTTGGAGGCTGCAGATAGTGACCCCAGTGTGCCGCCTTACGACACAGCCCTCATCTATGACTACGAGGGT GACGGCTCGGTGGCGGGGACGCTGAGCTCCATCCTGTCCAGCCAGGGCGATGAGGACCAGGACTACGACTACCTCAGAGACTGGGGGCCC CGCTTCGCCCGGCTGGCAGACATGTATGGGCACCCGTGCGGGTTGGAGTACGGGGCCAGATGGGACCACCAGGCCAGGGAGGGTCTTTCT |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_SF3B3_ENST00000302516_chr16_70578436_+_CDH15_ENST00000289746_chr16_89245824_+_4280nt GCCTTTTTCCGCCGCGCGCCACCAGAATGTCCCTGTCTTGAGGTCTAATGGCGGACGCCAGTATGTTGGAGTTGGTGGTGGCTTAAGTTT TGAAGGGAGGTAGCATCCGTTGGATATCCACACCATCCTTCTCGCTGCAGGCTTTCTTGGACTCCGTACTGTTGGTGTAACCAAGGCCTG GAGGTCTGGGTGGCTCAGGTTTCCTGCAGCCATGTTTCTGTACAACTTAACCTTGCAGAGAGCCACTGGCATCAGCTTTGCCATTCATGG AAACTTTTCTGGAACCAAACAACAAGAAATTGTTGTTTCCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAACACTGGCAAAGT ACATACCCTACTCACTGTGGAAGTATTCGGTGTTATCCGGTCACTCATGGCCTTTAGGCTGACAGGTGGCACCAAAGACTACATTGTAGT TGGCAGTGACTCTGGTCGAATTGTTATTTTGGAATACCAGCCATCTAAGAATATGTTTGAGAAGATTCACCAAGAAACCTTTGGCAAGAG TGGATGCCGTCGCATCGTTCCTGGCCAGTTCTTAGCTGTGGATCCCAAAGGGCGAGCCGTTATGATTAGTGCCATTGAGAAACAGAAATT GGTGTATATTTTGAACAGAGATGCTGCAGCCCGACTTACCATTTCATCTCCCCTGGAAGCCCACAAAGCAAACACTTTAGTGTATCATGT AGTTGGAGTAGATGTCGGATTTGAAAATCCAATGTTTGCTTGTCTGGAAATGGATTATGAGGAAGCAGACAATGATCCAACAGGGGAAGC AGCAGCTAATACCCAGCAGACACTTACTTTCTATGAGCTAGACCTTGGTTTAAATCATGTGGTCCGAAAATACAGTGAACCTTTGGAGGA ACACGGCAACTTCCTTATTACAGTTCCAGGAGGGTCAGATGGTCCAAGTGGAGTACTGATCTGCTCTGAAAACTATATTACTTACAAGAA CTTTGGTGACCAGCCAGATATCCGCTGTCCAATTCCCAGGAGGCGGAATGACCTGGATGACCCTGAAAGAGGAATGATTTTTGTCTGCTC TGCAACCCATAAAACCAAATCGATGTTCTTCTTTTTGGCTCAAACTGAGCAGGGAGATATCTTTAAGATCACTTTGGAGACAGATGAAGA TATGGTTACTGAGATCCGGCTCAAATATTTTGATACTGTACCCGTTGCTGCTGCCATGTGTGTGCTTAAAACAGGGTTCCTTTTTGTAGC ATCAGAATTTGGAAACCATTACTTATATCAAATTGCACATCTTGGAGATGATGATGAAGAACCTGAGTTTTCATCAGCCATGCCTCTGGA AGAAGGAGACACATTCTTTTTTCAGCCAAGACCACTTAAAAACCTTGTGCTGGTTGATGAGTTGGACAGCCTCTCTCCCATTCTGTTTTG CCAGATAGCTGATCTGGCCAATGAAGATACTCCACAGTTGTATGTGGCCTGTGGTAGGGGACCCCGATCATCTCTGAGAGTCCTAAGACA TGGACTTGAGAGCCTCTGCCTGTCTTTGGGGGTTCCTGGATGGAGGAGGCCCACCACCCTGTACCCCTGGCGCCGGGCGCCTGCCCTGAG CCGCGTGCGGAGGGCCTGGGTCATCCCCCCGATCAGCGTATCCGAGAACCACAAGCGTCTCCCCTACCCCCTGGTTCAGATCAAGTCGGA CAAGCAGCAGCTGGGCAGCGTCATCTACAGCATCCAGGGACCCGGCGTGGATGAGGAGCCCCGGGGCGTCTTCTCTATCGACAAGTTCAC AGGGAAGGTCTTCCTCAATGCCATGCTGGACCGCGAGAAGACTGATCGCTTCAGGCTAAGAGCGTTTGCCCTGGACCTGGGAGGATCCAC CCTGGAGGACCCCACGGACCTGGAGATTGTAGTTGTGGATCAGAATGACAACCGGCCAGCCTTCCTGCAGGAGGCGTTCACTGGCCGCGT GCTGGAGGGTGCAGTCCCAGGCACCTATGTGACCAGGGCAGAGGCCACAGATGCCGACGACCCCGAGACGGACAACGCAGCGCTGCGGTT CTCCATCCTGCAGCAGGGCAGCCCCGAGCTCTTCAGCATCGACGAGCTCACAGGAGAGATCCGCACAGTGCAAGTGGGGCTGGACCGCGA GGTGGTCGCGGTGTACAATCTGACCCTGCAGGTGGCGGACATGTCTGGAGACGGCCTCACAGCCACTGCCTCAGCCATCATCACCCTTGA TGACATCAATGACAATGCCCCCGAGTTCACCAGGGATGAGTTCTTCATGGAGGCCATAGAGGCCGTCAGCGGAGTGGATGTGGGACGCCT GGAAGTGGAGGACAGGGACCTGCCAGGCTCCCCAAACTGGGTGGCCAGGTTCACCATCCTGGAAGGCGACCCCGATGGGCAGTTCACCAT CCGCACGGACCCCAAGACCAACGAGGGTGTTCTGTCCATTGTGAAGGCCCTGGACTATGAGAGCTGTGAACACTACGAACTCAAAGTGTC GGTGCAGAATGAGGCCCCGCTGCAGGCGGCTGCCCTTAGGGCTGAGCGGGGCCAGGCCAAGGTCCGCGTGCATGTGCAGGACACCAACGA GCCCCCCGTGTTCCAGGAGAACCCACTTCGGACCAGCCTAGCAGAGGGGGCACCCCCAGGCACTCTGGTGGCCACCTTCTCTGCCCGGGA CCCTGACACAGAGCAGCTGCAGAGGCTCAGCTACTCCAAGGACTACGACCCGGAAGACTGGCTGCAAGTGGACGCAGCCACTGGCCGGAT CCAGACCCAGCACGTGCTCAGCCCGGCGTCCCCCTTCCTCAAGGGCGGCTGGTACAGAGCCATCGTCCTGGCCCAGGATGACGCCTCCCA GCCCCGCACCGCCACCGGCACCCTGTCCATCGAGATCCTGGAGGTGAACGACCATGCACCTGTGCTGGCCCCGCCGCCGCCGGGCAGCCT GTGCAGCGAGCCACACCAAGGCCCAGGCCTCCTCCTGGGCGCCACGGATGAGGACCTGCCCCCCCACGGGGCCCCCTTCCACTTCCAGCT GAGCCCCAGGCTCCCAGAGCTCGGCCGGAACTGGAGCCTCAGCCAGGTCAACGTGAGCCACGCGCGCCTGCGGCCGCGACACCAGGTCCC CGAAGGCCTGCACCGCCTCAGCCTGCTGCTCCGGGACTCGGGGCAGCCGCCCCAGCAGCGCGAGCAGCCTCTGAACGTGACCGTGTGCCG CTGCGGCAAGGACGGCGTCTGCCTGCCGGGGGCCGCAGCGCTGCTGGCGGGGGGCACAGGCCTCAGCCTGGGCGCACTGGTCATCGTGCT GGCCAGCGCCCTCCTGCTGCTGGTGCTGGTCCTGCTCGTGGCACTCCGGGCGCGGTTCTGGAAGCAGTCTCGGGGCAAGGGGCTGCTGCA CGGCCCCCAGGACGACCTTCGAGACAATGTCCTCAACTACGATGAGCAAGGAGGCGGGGAGGAGGACCAGGACGCCTACGACATCAGCCA GCTGCGTCACCCGACAGCGCTGAGCCTGCCTCTGGGACCGCCGCCACTTCGCAGAGATGCCCCGCAGGGCCGCCTGCACCCCCAGCCACC CCGAGTGCTGCCCACCAGCCCCCTGGACATCGCCGACTTCATCAATGATGGCTTGGAGGCTGCAGATAGTGACCCCAGTGTGCCGCCTTA CGACACAGCCCTCATCTATGACTACGAGGGTGACGGCTCGGTGGCGGGGACGCTGAGCTCCATCCTGTCCAGCCAGGGCGATGAGGACCA GGACTACGACTACCTCAGAGACTGGGGGCCCCGCTTCGCCCGGCTGGCAGACATGTATGGGCACCCGTGCGGGTTGGAGTACGGGGCCAG ATGGGACCACCAGGCCAGGGAGGGTCTTTCTCCTGGGGCACTGCTACCCAGACACAGAGGCCGGACAGCCTGACCCTGGGGCGCAACTGG ACATGCCACTCCCCGGCCTCGTGGCAGTGATGGCCCCTGCAGAGGCAGCCTGAGGTCACCGGGCCCGACCCCCCTGGGCCTGGGGCAGCC TCCTTCCTGTAGGCGAGGGCCCAAGTCTGGGGGCAGAACCTGAGTGTGGATGGGGCGGCCAGGAAGAGGCCCCTTCCTGCCGGGGTGGGA AGAGTTTCTCTCCATCGGCCCCATGCGGGTCACCTCCCTAGTCCCACCTTTGCCTCCTACCAGTGAACCTCATCTTTGTATGAAAGACAG |
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FusionGenePPI for SF3B3_CDH15 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| SF3B3 | SMNDC1, CFLAR, TNFRSF10D, RNPS1, RNU11, NCOR1, SF3B2, SF3B1, SF3A2, SUPT3H, TAF9, HGS, TCEA1, SRRM1, SRRM2, KAT2A, HDAC5, TOP1, YWHAG, SMAD5, KLF10, OSGEP, RUFY2, RAD9A, ZNF579, NAGK, SMARCAD1, SREK1, TAF10, ARRB2, CUL3, CUL2, CDK2, CUL1, COPS5, CAND1, SF3A1, SNRPD1, HNRNPK, SNRPD2, SF3A3, SNRPA1, SF3B4, SF3B5, SF3B6, PHF5A, SNRNP200, PRPF8, SNRPB2, SRSF1, HNRNPR, TCERG1, EFTUD2, PRPF6, RBMX, YBX1, SNRPA, SRSF7, HNRNPM, U2AF1, U2AF2, SRSF2, DDX5, PRPF31, SFPQ, SMC1A, PRPF19, SART1, SMU1, LMNA, TUBB, WDR18, STOML2, CCT2, TPBG, LAMP2, TRA2A, TXNRD1, ZC3H18, TJAP1, UBE3A, SPDL1, UTP14A, VTN, VPS33B, AGMAT, THRAP3, MTHFD1, TMOD2, STOM, TRIM55, SSR3, MAGOH, EIF4A3, PPIL1, HSPB1, TOE1, HSP90AA1, IFIT3, CD81, IGSF8, SKP1, SKP2, CUL4A, EPS8, RBM6, FBXO6, PRPF40A, WBP4, APBB1, WWOX, RPA3, RPA2, RPA1, ERG, LGR4, NUDCD3, HUWE1, FUS, MDM2, CCDC101, CUL7, OBSL1, CCDC8, EZH2, SUZ12, EED, RNF2, USP7, UNK, BCAS2, CCAR1, CCAR2, DCTN1, ISY1-RAB43, ISY1, LUC7L, PRPF3, PRPF4, CCDC97, CDC40, CDC5L, COPA, COPE, COPG1, DHX15, EIF4G1, ELP4, KPNB1, LMNB1, LSM4, LUC7L2, PLRG1, PSME3, RPL18A, SRRT, USP10, XAB2, SMC3, SNRPD3, SPTAN1, SSSCA1, SYNCRIP, RNU12, NTRK1, SCARNA22, TAF4, HIST1H3E, MCM5, SNW1, AIRE, ZNF746, FLCN, SNRPE, PLK1, CYLD, CD2BP2, TRIM25, BRCA1, YAP1 | CDH15 | ARVCF, GNA12, SGTA, CDON, BOC |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| Hgene | SF3B3 | chr16:70578436 | chr16:89245824 | ENST00000302516 | + | 10 | 26 | 105_119 | 443 | 1218 | PHF5A%2C SF3B1 and SF3B5 |
| Hgene | SF3B3 | chr16:70578436 | chr16:89245824 | ENST00000302516 | + | 10 | 26 | 145_168 | 443 | 1218 | PHF5A%2C SF3B1 and SF3B5 |
| Hgene | SF3B3 | chr16:70578436 | chr16:89245824 | ENST00000302516 | + | 10 | 26 | 193_231 | 443 | 1218 | SF3B1 and SF3B5 |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Hgene | SF3B3 | chr16:70578436 | chr16:89245824 | ENST00000302516 | + | 10 | 26 | 786_804 | 443 | 1218 | SF3B1 and SF3B5 |
| Hgene | SF3B3 | chr16:70578436 | chr16:89245824 | ENST00000302516 | + | 10 | 26 | 1028_1049 | 443 | 1218 | SF3B1 |
| Hgene | SF3B3 | chr16:70578436 | chr16:89245824 | ENST00000302516 | + | 10 | 26 | 1100_1123 | 443 | 1218 | SF3B5 |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SF3B3_CDH15 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SF3B3_CDH15 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | CDH15 | C0001973 | Alcoholic Intoxication, Chronic | 1 | PSYGENET |
| Tgene | CDH15 | C0032460 | Polycystic Ovary Syndrome | 1 | CTD_human |
| Tgene | CDH15 | C2675488 | Mental Retardation, Autosomal Dominant 3 | 1 | CTD_human;UNIPROT |
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