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Fusion gene ID: 33231 |
FusionGeneSummary for SERF1B_RNF111 |
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Fusion gene information | Fusion gene name: SERF1B_RNF111 | Fusion gene ID: 33231 | Hgene | Tgene | Gene symbol | SERF1B | RNF111 | Gene ID | 728492 | 54778 |
Gene name | small EDRK-rich factor 1B | ring finger protein 111 | |
Synonyms | FAM2B|H4F5C|h4F5 | ARK|hRNF111 | |
Cytomap | 5q13.2 | 15q22.1-q22.2 | |
Type of gene | protein-coding | protein-coding | |
Description | small EDRK-rich factor 1SMA modifier 1protein 4F5small EDRK-rich factor 1B (centromeric) | E3 ubiquitin-protein ligase ArkadiaArkadiaRING-type E3 ubiquitin transferase Arkadia | |
Modification date | 20180329 | 20180523 | |
UniProtAcc | O75920 | Q6ZNA4 | |
Ensembl transtripts involved in fusion gene | ENST00000380750, ENST00000506542, ENST00000515588, ENST00000380751, ENST00000503931, ENST00000514285, | ENST00000348370, ENST00000434298, ENST00000559209, ENST00000557998, ENST00000561186, ENST00000560080, | |
Fusion gene scores | * DoF score | 2 X 1 X 1=2 | 7 X 6 X 5=210 |
# samples | 2 | 7 | |
** MAII score | log2(2/2*10)=3.32192809488736 | log2(7/210*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SERF1B [Title/Abstract] AND RNF111 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SKCM | TCGA-BF-A5EQ-01A | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000380750 | ENST00000348370 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380750 | ENST00000434298 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380750 | ENST00000559209 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380750 | ENST00000557998 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380750 | ENST00000561186 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
5CDS-intron | ENST00000380750 | ENST00000560080 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000506542 | ENST00000348370 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000506542 | ENST00000434298 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000506542 | ENST00000559209 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000506542 | ENST00000557998 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000506542 | ENST00000561186 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
5CDS-intron | ENST00000506542 | ENST00000560080 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000515588 | ENST00000348370 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000515588 | ENST00000434298 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000515588 | ENST00000559209 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000515588 | ENST00000557998 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000515588 | ENST00000561186 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
5CDS-intron | ENST00000515588 | ENST00000560080 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380751 | ENST00000348370 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380751 | ENST00000434298 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380751 | ENST00000559209 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380751 | ENST00000557998 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000380751 | ENST00000561186 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
5CDS-intron | ENST00000380751 | ENST00000560080 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000503931 | ENST00000348370 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000503931 | ENST00000434298 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000503931 | ENST00000559209 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000503931 | ENST00000557998 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
Frame-shift | ENST00000503931 | ENST00000561186 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
5CDS-intron | ENST00000503931 | ENST00000560080 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
3UTR-3CDS | ENST00000514285 | ENST00000348370 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
3UTR-3CDS | ENST00000514285 | ENST00000434298 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
3UTR-3CDS | ENST00000514285 | ENST00000559209 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
3UTR-3CDS | ENST00000514285 | ENST00000557998 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
3UTR-3CDS | ENST00000514285 | ENST00000561186 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
3UTR-intron | ENST00000514285 | ENST00000560080 | SERF1B | chr5 | 69322342 | + | RNF111 | chr15 | 59358963 | + |
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FusionProtFeatures for SERF1B_RNF111 |
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Hgene | Tgene |
SERF1B | RNF111 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SERF1B_RNF111 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SERF1B_RNF111 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SERF1B | RNF111 | SMAD3, SMAD6, SMAD7, SKIL, SMAD2, UBE2D1, UBE2D2, UBE2D3, UBE2D4, UBE2E1, UBE2E3, UBE2G2, UBE2W, UBE2I, UBE2M, UBE2V1, UBE2K, UBE2E2, UBE2Q2, TSG101, CREB1, SKI, RB1CC1, SUMO2, SUMO1, FHL2, RNF111, HSP90AA1, SMURF2, PML, UBE2N, XPC, DTX3L, TRIM21, ANAPC11, LRSAM1, MARCH7, PHF7, TRIM8, TRAF5, CSNK2A2, CTBP1, MVP, ACTN3, CSNK2A1, KRTAP5-9, EDARADD, LCE4A, SUMO3, NR4A1, AXIN2, UBC, ESRP2, ESRP1, SETD7, FAM189B, UBXN7, TPX2, DCUN1D5, TTC9C, SUGP1, CGGBP1, RBM27, GNAQ, ADD3, C21orf59, SPAST |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SERF1B_RNF111 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SERF1B_RNF111 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |