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Fusion gene ID: 33084 |
FusionGeneSummary for SEC61A2_CAMK1D |
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Fusion gene information | Fusion gene name: SEC61A2_CAMK1D | Fusion gene ID: 33084 | Hgene | Tgene | Gene symbol | SEC61A2 | CAMK1D | Gene ID | 55176 | 57118 |
Gene name | Sec61 translocon alpha 2 subunit | calcium/calmodulin dependent protein kinase ID | |
Synonyms | - | CKLiK|CaM-K1|CaMKID | |
Cytomap | 10p14 | 10p13 | |
Type of gene | protein-coding | protein-coding | |
Description | protein transport protein Sec61 subunit alpha isoform 2Sec61 alpha 2 subunitSec61 alpha form 2protein transport protein Sec61 subunit alphasec61 alpha-2 | calcium/calmodulin-dependent protein kinase type 1DCAMK1D/ANAPC5 fusionCaM kinase IDCamKI-like protein kinasecaM kinase I deltacaM-KI deltacaMKI delta | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9H9S3 | Q8IU85 | |
Ensembl transtripts involved in fusion gene | ENST00000379051, ENST00000379033, ENST00000298428, ENST00000495368, ENST00000304267, ENST00000379020, ENST00000379017, | ENST00000378847, ENST00000487696, ENST00000378845, | |
Fusion gene scores | * DoF score | 3 X 4 X 3=36 | 8 X 9 X 6=432 |
# samples | 4 | 10 | |
** MAII score | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(10/432*10)=-2.11103131238874 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SEC61A2 [Title/Abstract] AND CAMK1D [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CAMK1D | GO:0032793 | positive regulation of CREB transcription factor activity | 16324104 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | LUSC | TCGA-58-8388-01A | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000379051 | ENST00000378847 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000379051 | ENST00000487696 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000379051 | ENST00000378845 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
intron-3CDS | ENST00000379033 | ENST00000378847 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
intron-intron | ENST00000379033 | ENST00000487696 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
intron-intron | ENST00000379033 | ENST00000378845 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
Frame-shift | ENST00000298428 | ENST00000378847 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000298428 | ENST00000487696 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000298428 | ENST00000378845 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
3UTR-3CDS | ENST00000495368 | ENST00000378847 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
3UTR-intron | ENST00000495368 | ENST00000487696 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
3UTR-intron | ENST00000495368 | ENST00000378845 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
Frame-shift | ENST00000304267 | ENST00000378847 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000304267 | ENST00000487696 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000304267 | ENST00000378845 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
Frame-shift | ENST00000379020 | ENST00000378847 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000379020 | ENST00000487696 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000379020 | ENST00000378845 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
Frame-shift | ENST00000379017 | ENST00000378847 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000379017 | ENST00000487696 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
5CDS-intron | ENST00000379017 | ENST00000378845 | SEC61A2 | chr10 | 12178169 | + | CAMK1D | chr10 | 12802947 | + |
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FusionProtFeatures for SEC61A2_CAMK1D |
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Hgene | Tgene |
SEC61A2 | CAMK1D |
Appears to play a crucial role in the insertion ofsecretory and membrane polypeptides into the ER. It is requiredfor assembly of membrane and secretory proteins. Found to betightly associated with membrane-bound ribosomes, either directlyor through adaptor proteins (By similarity). {ECO:0000250}. | Calcium/calmodulin-dependent protein kinase thatoperates in the calcium-triggered CaMKK-CaMK1 signaling cascadeand, upon calcium influx, activates CREB-dependent genetranscription, regulates calcium-mediated granulocyte function andrespiratory burst and promotes basal dendritic growth ofhippocampal neurons. In neutrophil cells, required for cytokine-induced proliferative responses and activation of the respiratoryburst. Activates the transcription factor CREB1 in hippocampalneuron nuclei. May play a role in apoptosis of erythroleukemiacells. In vitro, phosphorylates transcription factor CREM isoformBeta. {ECO:0000269|PubMed:11050006, ECO:0000269|PubMed:15840691,ECO:0000269|PubMed:16324104, ECO:0000269|PubMed:17056143}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SEC61A2_CAMK1D |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SEC61A2_CAMK1D |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SEC61A2 | USP19, CLN3, CFTR, PTPN5, PTPRE, PTPRN, PTPRO | CAMK1D | NEDD4, NEDD4L, POT1, APP, BAG3, TNFSF13, ASAH1, CDC25A, CUL3, GMFG, BNIP3L, DCPS, HSPA1L, NAE1, NUCB2, PCYT2, TUBB6, TUFM, UBA3, XPO1, CAMK1, CAMK1G, ZG16B, QPCTL, MUC7, AMY1C, CKS2, CST4, XYLT2, CDH1, LAMP3, CST1, C9orf173, GNRHR, CALM3 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SEC61A2_CAMK1D |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SEC61A2_CAMK1D |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |