![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 33068 |
FusionGeneSummary for SEC31A_LRCH4 |
![]() |
Fusion gene information | Fusion gene name: SEC31A_LRCH4 | Fusion gene ID: 33068 | Hgene | Tgene | Gene symbol | SEC31A | LRCH4 | Gene ID | 22872 | 4034 |
Gene name | SEC31 homolog A, COPII coat complex component | leucine rich repeats and calponin homology domain containing 4 | |
Synonyms | ABP125|ABP130|HSPC275|HSPC334|SEC31L1 | LRN|LRRN1|LRRN4|PP14183 | |
Cytomap | 4q21.22 | 7q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | protein transport protein Sec31ASEC31 homolog A, COPII coating complex componentSEC31-like protein 1SEC31-related protein Aweb1-like proteinyeast Sec31p homolog | leucine-rich repeat and calponin homology domain-containing protein 4leucine rich repeat neuronal 4leucine-rich neuronal proteinleucine-rich repeats and calponin homology (CH) domain containing 4 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O94979 | O75427 | |
Ensembl transtripts involved in fusion gene | ENST00000348405, ENST00000513858, ENST00000395310, ENST00000443462, ENST00000509142, ENST00000326950, ENST00000432794, ENST00000311785, ENST00000448323, ENST00000505472, ENST00000500777, ENST00000508502, ENST00000355196, ENST00000264405, ENST00000505984, ENST00000508479, ENST00000436790, | ENST00000310300, ENST00000497245, | |
Fusion gene scores | * DoF score | 15 X 14 X 8=1680 | 4 X 4 X 2=32 |
# samples | 18 | 4 | |
** MAII score | log2(18/1680*10)=-3.22239242133645 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: SEC31A [Title/Abstract] AND LRCH4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SEC31A | GO:0051592 | response to calcium ion | 17196169 |
Hgene | SEC31A | GO:0090110 | cargo loading into COPII-coated vesicle | 17499046|18843296 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BI052970 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000348405 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000348405 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000513858 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000513858 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000395310 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000395310 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000443462 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000443462 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000509142 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000509142 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000326950 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000326950 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000432794 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000432794 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000311785 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000311785 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000448323 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000448323 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000505472 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000505472 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000500777 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000500777 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000508502 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000508502 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000355196 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000355196 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000264405 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000264405 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000505984 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000505984 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000508479 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000508479 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000436790 | ENST00000310300 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
intron-3CDS | ENST00000436790 | ENST00000497245 | SEC31A | chr4 | 83765556 | - | LRCH4 | chr7 | 100174392 | - |
Top |
FusionProtFeatures for SEC31A_LRCH4 |
![]() |
Hgene | Tgene |
SEC31A | LRCH4 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for SEC31A_LRCH4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for SEC31A_LRCH4 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for SEC31A_LRCH4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for SEC31A_LRCH4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SEC31A | C0079744 | Diffuse Large B-Cell Lymphoma | 1 | CTD_human |