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Fusion gene ID: 33059 |
FusionGeneSummary for SEC24D_TPM3 |
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Fusion gene information | Fusion gene name: SEC24D_TPM3 | Fusion gene ID: 33059 | Hgene | Tgene | Gene symbol | SEC24D | TPM3 | Gene ID | 9871 | 7170 |
Gene name | SEC24 homolog D, COPII coat complex component | tropomyosin 3 | |
Synonyms | CLCRP2 | CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30 | |
Cytomap | 4q26 | 1q21.3 | |
Type of gene | protein-coding | protein-coding | |
Description | protein transport protein Sec24DSEC24 related gene family, member DSEC24-related protein D | tropomyosin alpha-3 chainalpha-tropomyosin, slow skeletalcytoskeletal tropomyosin TM30epididymis luminal protein 189epididymis secretory sperm binding protein Li 82pheat-stable cytoskeletal protein 30 kDatropomyosin 3 nutropomyosin gammatropomyosi | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | O94855 | P06753 | |
Ensembl transtripts involved in fusion gene | ENST00000280551, ENST00000379735, ENST00000429811, ENST00000505134, ENST00000511481, ENST00000419654, | ENST00000368533, ENST00000469717, ENST00000330188, ENST00000341485, ENST00000341372, ENST00000328159, ENST00000271850, ENST00000302206, ENST00000368531, ENST00000323144, ENST00000368530, | |
Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 7 X 6 X 4=168 |
# samples | 5 | 9 | |
** MAII score | log2(5/18*10)=1.47393118833241 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(9/168*10)=-0.900464326449086 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SEC24D [Title/Abstract] AND TPM3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | SEC24D | GO:0090110 | cargo loading into COPII-coated vesicle | 17499046|18843296 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BE695910 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + | ||
ChiTaRS3.1 | BE695897 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + | ||
ChiTaRS3.1 | BE695898 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000280551 | ENST00000368533 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000469717 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000330188 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000341485 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000341372 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000328159 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000271850 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000302206 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000368531 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000323144 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000280551 | ENST00000368530 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000368533 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000469717 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000330188 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000341485 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000341372 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000328159 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000271850 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000302206 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000368531 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000323144 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000379735 | ENST00000368530 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000368533 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000469717 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000330188 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000341485 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000341372 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000328159 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000271850 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000302206 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000368531 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000323144 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000429811 | ENST00000368530 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000368533 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000469717 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000330188 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000341485 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000341372 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000328159 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000271850 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000302206 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000368531 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000323144 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000505134 | ENST00000368530 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000368533 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000469717 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000330188 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000341485 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000341372 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000328159 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000271850 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000302206 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000368531 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000323144 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000511481 | ENST00000368530 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000368533 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000469717 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000330188 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000341485 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000341372 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000328159 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000271850 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000302206 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000368531 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000323144 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
intron-intron | ENST00000419654 | ENST00000368530 | SEC24D | chr4 | 119644235 | + | TPM3 | chr1 | 154158571 | + |
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FusionProtFeatures for SEC24D_TPM3 |
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Hgene | Tgene |
SEC24D | TPM3 |
Component of the coat protein complex II (COPII) whichpromotes the formation of transport vesicles from the endoplasmicreticulum (ER). The coat has two main functions, the physicaldeformation of the endoplasmic reticulum membrane into vesiclesand the selection of cargo molecules for their transport to theGolgi complex (PubMed:17499046, PubMed:20427317, PubMed:18843296).Plays a central role in cargo selection within the COPII complexand together with SEC24C may have a different specificity comparedto SEC24A and SEC24B (PubMed:17499046, PubMed:20427317,PubMed:18843296). May more specifically package GPI-anchoredproteins through the cargo receptor TMED10 (PubMed:20427317). Mayalso be specific for IxM motif-containing cargos like the SNAREsGOSR2 and STX5 (PubMed:18843296). {ECO:0000269|PubMed:17499046,ECO:0000269|PubMed:18843296, ECO:0000269|PubMed:20427317}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for SEC24D_TPM3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for SEC24D_TPM3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SEC24D_TPM3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SEC24D_TPM3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | SEC24D | C4225382 | COLE-CARPENTER SYNDROME 2 | 1 | UNIPROT |
Tgene | TPM3 | C1836448 | Nemaline myopathy 1 | 9 | CTD_human;ORPHANET;UNIPROT |
Tgene | TPM3 | C0546264 | Congenital Fiber Type Disproportion | 5 | ORPHANET;UNIPROT |
Tgene | TPM3 | C0024667 | Animal Mammary Neoplasms | 2 | CTD_human |
Tgene | TPM3 | C0024668 | Mammary Neoplasms, Experimental | 2 | CTD_human |
Tgene | TPM3 | C0001418 | Adenocarcinoma | 1 | CTD_human |
Tgene | TPM3 | C0009375 | Colonic Neoplasms | 1 | CTD_human |
Tgene | TPM3 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | TPM3 | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Tgene | TPM3 | C0040136 | Thyroid Neoplasm | 1 | CTD_human |