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Fusion gene ID: 32918 |
FusionGeneSummary for SDAD1_C4orf22 |
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Fusion gene information | Fusion gene name: SDAD1_C4orf22 | Fusion gene ID: 32918 | Hgene | Tgene | Gene symbol | SDAD1 | C4orf22 | Gene ID | 55153 |
Gene name | SDA1 domain containing 1 | ||
Synonyms | - | ||
Cytomap | 4q21.1 | ||
Type of gene | protein-coding | ||
Description | protein SDA1 homologSDA1 domain-containing protein 1nucleolar protein 130 | ||
Modification date | 20180523 | ||
UniProtAcc | Q9NVU7 | Q6V702 | |
Ensembl transtripts involved in fusion gene | ENST00000356260, ENST00000395711, ENST00000513089, | ENST00000358105, ENST00000508675, ENST00000512931, | |
Fusion gene scores | * DoF score | 3 X 2 X 2=12 | 5 X 5 X 3=75 |
# samples | 3 | 5 | |
** MAII score | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: SDAD1 [Title/Abstract] AND C4orf22 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LGG | TCGA-DU-A7TA-01A | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000356260 | ENST00000358105 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
In-frame | ENST00000356260 | ENST00000508675 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
5CDS-intron | ENST00000356260 | ENST00000512931 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
In-frame | ENST00000395711 | ENST00000358105 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
In-frame | ENST00000395711 | ENST00000508675 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
5CDS-intron | ENST00000395711 | ENST00000512931 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
intron-3CDS | ENST00000513089 | ENST00000358105 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
intron-3CDS | ENST00000513089 | ENST00000508675 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
intron-intron | ENST00000513089 | ENST00000512931 | SDAD1 | chr4 | 76902525 | - | C4orf22 | chr4 | 81791147 | + |
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FusionProtFeatures for SDAD1_C4orf22 |
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Hgene | Tgene |
SDAD1 | C4orf22 |
Required for 60S pre-ribosomal subunits export to thecytoplasm. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >SDAD1 | chr4:76902525 | chr4:81791147 | ENST00000356260 | - | 3 | 22 | 253_315 | 98 | 688 | Coiled coil | Ontology_term=ECO:0000255 |
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FusionGeneSequence for SDAD1_C4orf22 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_SDAD1_ENST00000356260_chr4_76902525_-_C4orf22_ENST00000358105_chr4_81791147_+_221aa MSNRNNNKLPSNLPQLQNLIKRDPPAYIEEFLQQYNHYKSNVEIFKLQPNKPSKELAELVMFMAQISHCYPEYLSNFPQEVKDLLSCNHT VLDPDLRMSVIFIRDRNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIADNPEGLLFRYKRD >In-frame_SDAD1_ENST00000356260_chr4_76902525_-_C4orf22_ENST00000508675_chr4_81791147_+_221aa MSNRNNNKLPSNLPQLQNLIKRDPPAYIEEFLQQYNHYKSNVEIFKLQPNKPSKELAELVMFMAQISHCYPEYLSNFPQEVKDLLSCNHT VLDPDLRMSVIFIRDRNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIADNPEGLLFRYKRD >In-frame_SDAD1_ENST00000395711_chr4_76902525_-_C4orf22_ENST00000358105_chr4_81791147_+_221aa MSNRNNNKLPSNLPQLQNLIKRDPPAYIEEFLQQYNHYKSNVEIFKLQPNKPSKELAELVMFMAQISHCYPEYLSNFPQEVKDLLSCNHT VLDPDLRMSVIFIRDRNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIADNPEGLLFRYKRD >In-frame_SDAD1_ENST00000395711_chr4_76902525_-_C4orf22_ENST00000508675_chr4_81791147_+_221aa MSNRNNNKLPSNLPQLQNLIKRDPPAYIEEFLQQYNHYKSNVEIFKLQPNKPSKELAELVMFMAQISHCYPEYLSNFPQEVKDLLSCNHT VLDPDLRMSVIFIRDRNSHGQEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIADNPEGLLFRYKRD |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_SDAD1_ENST00000356260_chr4_76902525_-_C4orf22_ENST00000358105_chr4_81791147_+_663nt ATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTACATCGAGGAG TTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCAAAGAACTAGCAGAGCTGGTG ATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGGTGAAAGATCTTCTCTCCTGCAATCATACC GTATTGGATCCAGATCTGCGAATGTCCGTGATCTTTATTCGTGACAGAAATTCTCATGGGCAAGAGATATCAGGATACATCGACTATGCC CACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAAGGCCTACAGATATAAGCTTTTACAACTGG GACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAGAAGGCTTACTTTTCAGATACAAAAGAGAC AGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTATCCTGACAGAACTCTACGTACAAGCTGTC >In-frame_SDAD1_ENST00000356260_chr4_76902525_-_C4orf22_ENST00000508675_chr4_81791147_+_663nt ATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTACATCGAGGAG TTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCAAAGAACTAGCAGAGCTGGTG ATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGGTGAAAGATCTTCTCTCCTGCAATCATACC GTATTGGATCCAGATCTGCGAATGTCCGTGATCTTTATTCGTGACAGAAATTCTCATGGGCAAGAGATATCAGGATACATCGACTATGCC CACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAAGGCCTACAGATATAAGCTTTTACAACTGG GACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAGAAGGCTTACTTTTCAGATACAAAAGAGAC AGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTATCCTGACAGAACTCTACGTACAAGCTGTC >In-frame_SDAD1_ENST00000395711_chr4_76902525_-_C4orf22_ENST00000358105_chr4_81791147_+_663nt ATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTACATCGAGGAG TTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCAAAGAACTAGCAGAGCTGGTG ATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGGTGAAAGATCTTCTCTCCTGCAATCATACC GTATTGGATCCAGATCTGCGAATGTCCGTGATCTTTATTCGTGACAGAAATTCTCATGGGCAAGAGATATCAGGATACATCGACTATGCC CACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAAGGCCTACAGATATAAGCTTTTACAACTGG GACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAGAAGGCTTACTTTTCAGATACAAAAGAGAC AGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTATCCTGACAGAACTCTACGTACAAGCTGTC >In-frame_SDAD1_ENST00000395711_chr4_76902525_-_C4orf22_ENST00000508675_chr4_81791147_+_663nt ATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTACATCGAGGAG TTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCAAAGAACTAGCAGAGCTGGTG ATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGGTGAAAGATCTTCTCTCCTGCAATCATACC GTATTGGATCCAGATCTGCGAATGTCCGTGATCTTTATTCGTGACAGAAATTCTCATGGGCAAGAGATATCAGGATACATCGACTATGCC CACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAAGGCCTACAGATATAAGCTTTTACAACTGG GACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAGAAGGCTTACTTTTCAGATACAAAAGAGAC AGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTATCCTGACAGAACTCTACGTACAAGCTGTC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_SDAD1_ENST00000356260_chr4_76902525_-_C4orf22_ENST00000358105_chr4_81791147_+_926nt GCGCTATTTCCGGTCATACCCGGAAACACGAGTCCAAGCTGCAGCTGGCAGGGATTGCGGGGTGCCGGCCGTCTGAGTTTTTTTAAAACT GCTCGCCGCGAAGTCTGTCTGCAGCCAAAATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCA AGCGAGACCCGCCGGCCTACATCGAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATA AACCCAGCAAAGAACTAGCAGAGCTGGTGATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGG TGAAAGATCTTCTCTCCTGCAATCATACCGTATTGGATCCAGATCTGCGAATGTCCGTGATCTTTATTCGTGACAGAAATTCTCATGGGC AAGAGATATCAGGATACATCGACTATGCCCACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAA GGCCTACAGATATAAGCTTTTACAACTGGGACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAG AAGGCTTACTTTTCAGATACAAAAGAGACAGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTA TCCTGACAGAACTCTACGTACAAGCTGTCATTTTTGACCACATTTCCAGAAGGAAGACTTAAGTACCAACATGTTAATTTCCTAATAATT TGCTAAATTTAAATAAATTCCGTAGACAGAGCAAATTAGAATAATAAATGAGCCCTGTAGCTGGAAGGCAAATTAGAACAATAAAGTTAA >In-frame_SDAD1_ENST00000356260_chr4_76902525_-_C4orf22_ENST00000508675_chr4_81791147_+_782nt GCGCTATTTCCGGTCATACCCGGAAACACGAGTCCAAGCTGCAGCTGGCAGGGATTGCGGGGTGCCGGCCGTCTGAGTTTTTTTAAAACT GCTCGCCGCGAAGTCTGTCTGCAGCCAAAATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCA AGCGAGACCCGCCGGCCTACATCGAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATA AACCCAGCAAAGAACTAGCAGAGCTGGTGATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGG TGAAAGATCTTCTCTCCTGCAATCATACCGTATTGGATCCAGATCTGCGAATGTCCGTGATCTTTATTCGTGACAGAAATTCTCATGGGC AAGAGATATCAGGATACATCGACTATGCCCACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAA GGCCTACAGATATAAGCTTTTACAACTGGGACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAG AAGGCTTACTTTTCAGATACAAAAGAGACAGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTA >In-frame_SDAD1_ENST00000395711_chr4_76902525_-_C4orf22_ENST00000358105_chr4_81791147_+_903nt AAACACGAGTCCAAGCTGCAGCTGGCAGGGATTGCGGGGTGCCGGCCGTCTGAGTTTTTTTAAAACTGCTCGCCGCGAAGTCTGTCTGCA GCCAAAATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTACATC GAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCAAAGAACTAGCAGAG CTGGTGATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGGTGAAAGATCTTCTCTCCTGCAAT CATACCGTATTGGATCCAGATCTGCGAATGTCCGTGATCTTTATTCGTGACAGAAATTCTCATGGGCAAGAGATATCAGGATACATCGAC TATGCCCACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAAGGCCTACAGATATAAGCTTTTAC AACTGGGACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAGAAGGCTTACTTTTCAGATACAAA AGAGACAGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTATCCTGACAGAACTCTACGTACAA GCTGTCATTTTTGACCACATTTCCAGAAGGAAGACTTAAGTACCAACATGTTAATTTCCTAATAATTTGCTAAATTTAAATAAATTCCGT AGACAGAGCAAATTAGAATAATAAATGAGCCCTGTAGCTGGAAGGCAAATTAGAACAATAAAGTTAATAAAGAAGTTAGAAAGAAAACTG >In-frame_SDAD1_ENST00000395711_chr4_76902525_-_C4orf22_ENST00000508675_chr4_81791147_+_759nt AAACACGAGTCCAAGCTGCAGCTGGCAGGGATTGCGGGGTGCCGGCCGTCTGAGTTTTTTTAAAACTGCTCGCCGCGAAGTCTGTCTGCA GCCAAAATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTACATC GAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCAAAGAACTAGCAGAG CTGGTGATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAGGTGAAAGATCTTCTCTCCTGCAAT CATACCGTATTGGATCCAGATCTGCGAATGTCCGTGATCTTTATTCGTGACAGAAATTCTCATGGGCAAGAGATATCAGGATACATCGAC TATGCCCACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTGGAAAAAAAAGACTTCTTCCAAGGCCTACAGATATAAGCTTTTAC AACTGGGACGCTGATATTGCTGTTAGTAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAGAAGGCTTACTTTTCAGATACAAA AGAGACAGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTATCCTGACAGAACTCTACGTACAA |
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FusionGenePPI for SDAD1_C4orf22 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
SDAD1 | TGIF1, ELAVL1, LAMP1, TARDBP, CSNK2A2, ADARB1, TARBP2, NPM1, ZBTB38, TXNDC15, NAP1L1, FBL, GTPBP4, MRTO4, NMD3, NOC2L, NSA2, RBM28, NTRK1, SCARNA22, CEP19, CDC14B, RBM34, MAGEB10, RPS14, CDX1, RPL18A, FGF8, ZNF512, PLEKHO1, MECP2, TMEM194A, FOXA1 | C4orf22 | APP, BAG3 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for SDAD1_C4orf22 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SDAD1_C4orf22 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |